RNA–Protein interactions for RNA: ENST00000635776.1

SCN1A-210, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 10,107 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-210ENST00000635776 MRPS36P82909 103 aaKnown RBP3.37□□□□□ -1.87
SCN1A-210ENST00000635776 MEIG1Q5JSS6 88 aa3.37□□□□□ -1.87
SCN1A-210ENST00000635776 TMEM243Q9BU79 118 aa3.37□□□□□ -1.87
SCN1A-210ENST00000635776 SPANXDQ9BXN6 97 aa3.37□□□□□ -1.87
SCN1A-210ENST00000635776 TRBV7-3A0A075B6L6 115 aa3.37□□□□□ -1.87
SCN1A-210ENST00000635776 AMTNQ6UX39 209 aa3.37□□□□□ -1.87
SCN1A-210ENST00000635776 PRO1854Q9UHT4 67 aa3.37□□□□□ -1.87
SCN1A-210ENST00000635776 SPG11Q96JI7 2443 aa3.37□□□□□ -1.87
SCN1A-210ENST00000635776 TINCRA0A1B0GVN0 87 aa3.37□□□□□ -1.87
SCN1A-210ENST00000635776 TRBV6-4A0A1B0GX49 114 aa3.37□□□□□ -1.87
SCN1A-210ENST00000635776 BEAN1Q3B7T3 259 aa3.37□□□□□ -1.87
SCN1A-210ENST00000635776 Q6ZS46 218 aa3.37□□□□□ -1.87
SCN1A-210ENST00000635776 C2orf91Q6ZV80 131 aa3.37□□□□□ -1.87
SCN1A-210ENST00000635776 IGIPA6NJ69 53 aa3.37□□□□□ -1.87
SCN1A-210ENST00000635776 FGF6P10767 208 aa3.37□□□□□ -1.87
SCN1A-210ENST00000635776 TIMM17BO60830 172 aa3.37□□□□□ -1.87
SCN1A-210ENST00000635776 FHL3Q13643 280 aa3.37□□□□□ -1.87
SCN1A-210ENST00000635776 ZNRF2Q8NHG8 242 aa3.37□□□□□ -1.87
SCN1A-210ENST00000635776 OCIAD2Q56VL3 154 aa3.37□□□□□ -1.87
SCN1A-210ENST00000635776 WFDC11Q8NEX6 87 aa3.37□□□□□ -1.87
SCN1A-210ENST00000635776 PGPEP1Q9NXJ5 209 aa3.36□□□□□ -1.87
SCN1A-210ENST00000635776 IGHV1-58A0A0C4DH39 117 aa3.36□□□□□ -1.87
SCN1A-210ENST00000635776 A0A1B0GWB2 263 aa3.36□□□□□ -1.87
SCN1A-210ENST00000635776 PRB4P10163 310 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-210ENST00000635776 NDUFA12Q9UI09 145 aa3.36□□□□□ -1.87
SCN1A-210ENST00000635776 MKI67P46013 3256 aaKnown RBP3.36□□□□□ -1.87
SCN1A-210ENST00000635776 ANKRD11Q6UB99 2663 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-210ENST00000635776 IGLL5B9A064 214 aa3.36□□□□□ -1.87
SCN1A-210ENST00000635776 APOMO95445 188 aa3.36□□□□□ -1.87
SCN1A-210ENST00000635776 ACACBO00763 2458 aa3.36□□□□□ -1.87
SCN1A-210ENST00000635776 ATXN8Q156A1 80 aa3.36□□□□□ -1.87
SCN1A-210ENST00000635776 C11orf44Q8N8P7 122 aa3.36□□□□□ -1.87
SCN1A-210ENST00000635776 A0A1B0GV72 72 aa3.36□□□□□ -1.87
SCN1A-210ENST00000635776 DEFB136Q30KP8 78 aa3.36□□□□□ -1.87
SCN1A-210ENST00000635776 SLC25A29Q8N8R3 303 aa3.36□□□□□ -1.87
SCN1A-210ENST00000635776 LINC01006Q8NI28 216 aa3.36□□□□□ -1.87
SCN1A-210ENST00000635776 CSDC2Q9Y534 153 aaKnown RBP3.36□□□□□ -1.87
SCN1A-210ENST00000635776 F8P00451 2351 aa3.36□□□□□ -1.87
SCN1A-210ENST00000635776 LINC00315P59091 139 aa3.36□□□□□ -1.87
SCN1A-210ENST00000635776 C10orf126Q8N4M7 172 aa3.36□□□□□ -1.87
SCN1A-210ENST00000635776 RNF183Q96D59 192 aa3.36□□□□□ -1.87
SCN1A-210ENST00000635776 A0A0B4J2C4 111 aa3.36□□□□□ -1.87
SCN1A-210ENST00000635776 CHCHD5Q9BSY4 110 aa3.36□□□□□ -1.87
SCN1A-210ENST00000635776 CFAP126Q5VTH2 177 aa3.35□□□□□ -1.87
SCN1A-210ENST00000635776 ATP6V0E2Q8NHE4 81 aa3.35□□□□□ -1.87
SCN1A-210ENST00000635776 KIR2DL5BQ8NHK3 375 aa3.35□□□□□ -1.87
SCN1A-210ENST00000635776 C5orf42Q9H799 3197 aa3.35□□□□□ -1.87
SCN1A-210ENST00000635776 SS18Q15532 418 aa3.35□□□□□ -1.87
SCN1A-210ENST00000635776 UFSP1Q6NVU6 142 aa3.35□□□□□ -1.87
SCN1A-210ENST00000635776 DOPEY1Q5JWR5 2465 aa3.35□□□□□ -1.87
SCN1A-210ENST00000635776 TMEM223A0PJW6 202 aa3.35□□□□□ -1.87
SCN1A-210ENST00000635776 RBMY1BA6NDE4 496 aaKnown RBP3.35□□□□□ -1.87
SCN1A-210ENST00000635776 RBMY1EA6NEQ0 496 aaKnown RBP3.35□□□□□ -1.87
SCN1A-210ENST00000635776 TSHBP01222 138 aa3.35□□□□□ -1.87
SCN1A-210ENST00000635776 IGLV1-51P01701 117 aa3.35□□□□□ -1.87
SCN1A-210ENST00000635776 RBMY1DP0C7P1 496 aaKnown RBP3.35□□□□□ -1.87
SCN1A-210ENST00000635776 RBMY1A1P0DJD3 496 aaKnown RBP3.35□□□□□ -1.87
SCN1A-210ENST00000635776 RBMY1CP0DJD4 496 aa3.35□□□□□ -1.87
SCN1A-210ENST00000635776 LYRM9A8MSI8 78 aa3.35□□□□□ -1.87
SCN1A-210ENST00000635776 PLA2G2AP14555 144 aa3.35□□□□□ -1.87
SCN1A-210ENST00000635776 VSIG2Q96IQ7 327 aa3.35□□□□□ -1.87
SCN1A-210ENST00000635776 IGLV4-3A0A075B6K6 122 aa3.35□□□□□ -1.87
SCN1A-210ENST00000635776 GTSF1LQ9H1H1 148 aa3.35□□□□□ -1.87
SCN1A-210ENST00000635776 CFC1BP0CG36 223 aa3.35□□□□□ -1.87
SCN1A-210ENST00000635776 CFC1P0CG37 223 aa3.35□□□□□ -1.87
SCN1A-210ENST00000635776 A0A0J9YXV3 536 aa3.35□□□□□ -1.87
SCN1A-210ENST00000635776 TRAV26-1A0A087WT03 109 aa3.34□□□□□ -1.87
SCN1A-210ENST00000635776 FXYD2P54710 66 aa3.34□□□□□ -1.87
SCN1A-210ENST00000635776 ODF3L2Q3SX64 289 aa3.34□□□□□ -1.87
SCN1A-210ENST00000635776 BBC3Q96PG8 261 aaPredicted RBP3.34□□□□□ -1.87
SCN1A-210ENST00000635776 MUC7Q8TAX7 377 aa3.34□□□□□ -1.87
SCN1A-210ENST00000635776 LAMA3Q16787 3333 aa3.34□□□□□ -1.87
SCN1A-210ENST00000635776 IGHV3-73A0A0B4J1V6 119 aa3.34□□□□□ -1.87
SCN1A-210ENST00000635776 CXCL5P42830 114 aa3.34□□□□□ -1.87
SCN1A-210ENST00000635776 C10orf99Q6UWK7 81 aa3.34□□□□□ -1.87
SCN1A-210ENST00000635776 PRIMA1Q86XR5 153 aa3.34□□□□□ -1.87
SCN1A-210ENST00000635776 A0A0J9YY99 117 aa3.34□□□□□ -1.87
SCN1A-210ENST00000635776 ZNF22P17026 224 aaPredicted RBP3.34□□□□□ -1.87
SCN1A-210ENST00000635776 GAGE12JA6NER3 117 aa3.34□□□□□ -1.88
SCN1A-210ENST00000635776 DEFB1P60022 68 aa3.34□□□□□ -1.88
SCN1A-210ENST00000635776 RPL39P62891 51 aaKnown RBP3.34□□□□□ -1.88
SCN1A-210ENST00000635776 GAGE4Q13068 117 aa3.34□□□□□ -1.88
SCN1A-210ENST00000635776 GAGE5Q13069 117 aa3.34□□□□□ -1.88
SCN1A-210ENST00000635776 CFAP161Q6P656 301 aa3.34□□□□□ -1.88
SCN1A-210ENST00000635776 ZNF292O60281 2723 aa3.34□□□□□ -1.88
SCN1A-210ENST00000635776 AMELXQ99217 191 aa3.34□□□□□ -1.88
SCN1A-210ENST00000635776 JPT2Q9H910 190 aa3.34□□□□□ -1.88
SCN1A-210ENST00000635776 IGKV2D-26A0A0A0MRZ7 120 aa3.33□□□□□ -1.88
SCN1A-210ENST00000635776 KRTAP10-9P60411 292 aa3.33□□□□□ -1.88
SCN1A-210ENST00000635776 Q71RC1 249 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-210ENST00000635776 CACNA1AO00555 2505 aa3.33□□□□□ -1.88
SCN1A-210ENST00000635776 ZFAND6Q6FIF0 208 aa3.33□□□□□ -1.88
SCN1A-210ENST00000635776 PPDPFLQ8WWR9 84 aa3.33□□□□□ -1.88
SCN1A-210ENST00000635776 PRO0255Q9UI72 69 aa3.33□□□□□ -1.88
SCN1A-210ENST00000635776 PIEZO2Q9H5I5 2752 aa3.33□□□□□ -1.88
SCN1A-210ENST00000635776 TRAV13-2A0A0B4J235 113 aa3.33□□□□□ -1.88
SCN1A-210ENST00000635776 H3BMG7 143 aa3.33□□□□□ -1.88
SCN1A-210ENST00000635776 GAGE7O76087 117 aa3.33□□□□□ -1.88
SCN1A-210ENST00000635776 GAGE12FP0CL80 117 aa3.33□□□□□ -1.88
SCN1A-210ENST00000635776 GAGE12GP0CL81 117 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms