RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 PGLYRP4Q96LB8 373 aa14.08□□□□□ -0.16
CLN3-240ENST00000631023 FAM231BA6NCW3 169 aa14.07□□□□□ -0.16
CLN3-240ENST00000631023 CLLU1Q5K131 121 aa14.07□□□□□ -0.16
CLN3-240ENST00000631023 NFE4Q86UQ8 179 aa14.05□□□□□ -0.16
CLN3-240ENST00000631023 DNAH17Q9UFH2 4485 aa14.05□□□□□ -0.16
CLN3-240ENST00000631023 HIGD1CA8MV81 97 aa14.05□□□□□ -0.16
CLN3-240ENST00000631023 M0QY20 66 aa14.05□□□□□ -0.16
CLN3-240ENST00000631023 SUMO4Q6EEV6 95 aa14.05□□□□□ -0.16
CLN3-240ENST00000631023 DNAJC30Q96LL9 226 aa14.05□□□□□ -0.16
CLN3-240ENST00000631023 TNFRSF18Q9Y5U5 241 aa14.05□□□□□ -0.16
CLN3-240ENST00000631023 V9GYV3 84 aa14.05□□□□□ -0.16
CLN3-240ENST00000631023 IFITM2Q01629 132 aa14.03□□□□□ -0.16
CLN3-240ENST00000631023 DAZ4Q86SG3 579 aaKnown RBP14.03□□□□□ -0.16
CLN3-240ENST00000631023 DAZ3Q9NR90 486 aaKnown RBP14.03□□□□□ -0.16
CLN3-240ENST00000631023 FAT2Q9NYQ8 4349 aa14.03□□□□□ -0.16
CLN3-240ENST00000631023 A0A1B0GUT8 65 aa14.02□□□□□ -0.16
CLN3-240ENST00000631023 A0A1B0GVY2 172 aa14.02□□□□□ -0.16
CLN3-240ENST00000631023 TNP2Q05952 138 aa14.02□□□□□ -0.16
CLN3-240ENST00000631023 RASL11AQ6T310 242 aa14.02□□□□□ -0.16
CLN3-240ENST00000631023 IGHV3-30P01768 117 aa14.01□□□□□ -0.17
CLN3-240ENST00000631023 IGHV3-33P01772 117 aa14.01□□□□□ -0.17
CLN3-240ENST00000631023 IGHV3-30-3P0DP02 117 aa14.01□□□□□ -0.17
CLN3-240ENST00000631023 IGHV3-30-5P0DP03 117 aa14.01□□□□□ -0.17
CLN3-240ENST00000631023 TMEM97Q5BJF2 176 aa14.01□□□□□ -0.17
CLN3-240ENST00000631023 URGCP-MRPS24S4R325 110 aa14.01□□□□□ -0.17
CLN3-240ENST00000631023 NIT2Q9NQR4 276 aa14□□□□□ -0.17
CLN3-240ENST00000631023 NAT8BQ9UHF3 227 aa14□□□□□ -0.17
CLN3-240ENST00000631023 TRBV6-8A0A0A6YYG3 113 aa13.99□□□□□ -0.17
CLN3-240ENST00000631023 IBA57-AS1B1ANH7 110 aa13.99□□□□□ -0.17
CLN3-240ENST00000631023 RIGQ13278 110 aa13.99□□□□□ -0.17
CLN3-240ENST00000631023 KCNIP4Q6PIL6 250 aa13.99□□□□□ -0.17
CLN3-240ENST00000631023 NUP35Q8NFH5 326 aa13.99□□□□□ -0.17
CLN3-240ENST00000631023 FRZBQ92765 325 aa13.99□□□□□ -0.17
CLN3-240ENST00000631023 Q6ZRN7 208 aaPredicted RBP13.98□□□□□ -0.17
CLN3-240ENST00000631023 NIT1Q86X76 327 aa13.98□□□□□ -0.17
CLN3-240ENST00000631023 HECTD4Q9Y4D8 3996 aa13.98□□□□□ -0.17
CLN3-240ENST00000631023 A0A087WX48 190 aa13.96□□□□□ -0.17
CLN3-240ENST00000631023 SMIM27A0A1W2PRY6 76 aa13.96□□□□□ -0.17
CLN3-240ENST00000631023 PNRC1Q12796 327 aaPredicted RBP13.96□□□□□ -0.17
CLN3-240ENST00000631023 LAGE3Q14657 143 aa13.96□□□□□ -0.18
CLN3-240ENST00000631023 GATD1Q8NB37 220 aa13.96□□□□□ -0.18
CLN3-240ENST00000631023 CHCHD7Q9BUK0 85 aa13.96□□□□□ -0.18
CLN3-240ENST00000631023 TMEM191AQ9H0A3 160 aa13.96□□□□□ -0.18
CLN3-240ENST00000631023 TMEM262E9PQX1 116 aa13.95□□□□□ -0.18
CLN3-240ENST00000631023 PKIAP61925 76 aa13.95□□□□□ -0.18
CLN3-240ENST00000631023 UQCC3Q6UW78 93 aa13.95□□□□□ -0.18
CLN3-240ENST00000631023 BIRC6Q9NR09 4857 aa13.94□□□□□ -0.18
CLN3-240ENST00000631023 TRAV26-2A0A0B4J265 109 aa13.94□□□□□ -0.18
CLN3-240ENST00000631023 PPP1R2P9O14990 202 aa13.94□□□□□ -0.18
CLN3-240ENST00000631023 Q8N3U1 123 aa13.94□□□□□ -0.18
CLN3-240ENST00000631023 TRBV25-1A0A075B6N4 114 aa13.93□□□□□ -0.18
CLN3-240ENST00000631023 ELOBQ15370 118 aa13.93□□□□□ -0.18
CLN3-240ENST00000631023 NTM-AS1Q6ZSK4 140 aa13.93□□□□□ -0.18
CLN3-240ENST00000631023 CHCHD5Q9BSY4 110 aa13.93□□□□□ -0.18
CLN3-240ENST00000631023 Q9HAA7 133 aa13.93□□□□□ -0.18
CLN3-240ENST00000631023 TRAV8-3A0A0A6YYJ7 113 aa13.92□□□□□ -0.18
CLN3-240ENST00000631023 PKD1P98161 4303 aa13.92□□□□□ -0.18
CLN3-240ENST00000631023 IGHV1-24A0A0C4DH33 117 aa13.92□□□□□ -0.18
CLN3-240ENST00000631023 EREGO14944 169 aa13.92□□□□□ -0.18
CLN3-240ENST00000631023 PSCAO43653 123 aa13.92□□□□□ -0.18
CLN3-240ENST00000631023 A0A1B0GW15 77 aa13.91□□□□□ -0.18
CLN3-240ENST00000631023 IQCJQ1A5X6 159 aa13.91□□□□□ -0.18
CLN3-240ENST00000631023 PKHD1P08F94 4074 aa13.91□□□□□ -0.18
CLN3-240ENST00000631023 MT-ND4LP03901 98 aa13.9□□□□□ -0.18
CLN3-240ENST00000631023 TM2D2Q9BX73 214 aa13.9□□□□□ -0.18
CLN3-240ENST00000631023 KLK12Q9UKR0 248 aa13.9□□□□□ -0.18
CLN3-240ENST00000631023 RAB4AP20338 218 aa13.89□□□□□ -0.19
CLN3-240ENST00000631023 ANAPC16Q96DE5 110 aa13.89□□□□□ -0.19
CLN3-240ENST00000631023 RPL39LQ96EH5 51 aaKnown RBP13.89□□□□□ -0.19
CLN3-240ENST00000631023 MRAP2Q96G30 205 aa13.89□□□□□ -0.19
CLN3-240ENST00000631023 S100A8P05109 93 aa13.88□□□□□ -0.19
CLN3-240ENST00000631023 COTL1Q14019 142 aa13.88□□□□□ -0.19
CLN3-240ENST00000631023 AMN1Q8IY45 258 aa13.88□□□□□ -0.19
CLN3-240ENST00000631023 CAMPP49913 170 aa13.88□□□□□ -0.19
CLN3-240ENST00000631023 RNF185Q96GF1 192 aa13.88□□□□□ -0.19
CLN3-240ENST00000631023 TMEM218A2RU14 115 aa13.87□□□□□ -0.19
CLN3-240ENST00000631023 MPV17L2Q567V2 206 aa13.87□□□□□ -0.19
CLN3-240ENST00000631023 RMI2Q96E14 147 aa13.87□□□□□ -0.19
CLN3-240ENST00000631023 TMEM243Q9BU79 118 aa13.87□□□□□ -0.19
CLN3-240ENST00000631023 SDHAF1A6NFY7 115 aa13.86□□□□□ -0.19
CLN3-240ENST00000631023 F8W036 122 aa13.86□□□□□ -0.19
CLN3-240ENST00000631023 GAGE6Q13070 117 aa13.86□□□□□ -0.19
CLN3-240ENST00000631023 ATRAIDQ6UW56 229 aa13.86□□□□□ -0.19
CLN3-240ENST00000631023 SPATA12Q7Z6I5 190 aa13.86□□□□□ -0.19
CLN3-240ENST00000631023 COMMD7Q86VX2 200 aa13.86□□□□□ -0.19
CLN3-240ENST00000631023 COX11Q9Y6N1 276 aa13.86□□□□□ -0.19
CLN3-240ENST00000631023 A0A087WTM6 91 aa13.85□□□□□ -0.19
CLN3-240ENST00000631023 TRBV6-5A0A0K0K1A5 114 aa13.85□□□□□ -0.19
CLN3-240ENST00000631023 PPP1R17O96001 155 aa13.85□□□□□ -0.19
CLN3-240ENST00000631023 ANGP03950 147 aaKnown RBP13.85□□□□□ -0.19
CLN3-240ENST00000631023 HBBP68871 147 aa13.85□□□□□ -0.19
CLN3-240ENST00000631023 Q0VG73 95 aa13.85□□□□□ -0.19
CLN3-240ENST00000631023 UBE2WQ96B02 151 aa13.85□□□□□ -0.19
CLN3-240ENST00000631023 ST20Q9HBF5 79 aa13.85□□□□□ -0.19
CLN3-240ENST00000631023 NCR2O95944 276 aa13.84□□□□□ -0.19
CLN3-240ENST00000631023 AMTP48728 403 aa13.84□□□□□ -0.19
CLN3-240ENST00000631023 FAM104BQ5XKR9 115 aa13.84□□□□□ -0.19
CLN3-240ENST00000631023 MRPL54Q6P161 138 aaKnown RBP13.84□□□□□ -0.19
CLN3-240ENST00000631023 C16orf90A8MZG2 172 aa13.83□□□□□ -0.19
CLN3-240ENST00000631023 UBE2L6O14933 153 aa13.83□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms