RNA–Protein interactions for RNA: ENST00000588542.5

DDX39A-207, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 1,297 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-207ENST00000588542 NUP35Q8NFH5 326 aa13.72□□□□□ -0.21
DDX39A-207ENST00000588542 IGHV3-38A0A0C4DH36 116 aa13.71□□□□□ -0.21
DDX39A-207ENST00000588542 A0A1B0GUT8 65 aa13.71□□□□□ -0.21
DDX39A-207ENST00000588542 SMIM27A0A1W2PRY6 76 aa13.71□□□□□ -0.21
DDX39A-207ENST00000588542 UQCC3Q6UW78 93 aa13.71□□□□□ -0.21
DDX39A-207ENST00000588542 LINC00336Q6ZUF6 198 aa13.71□□□□□ -0.21
DDX39A-207ENST00000588542 BORCS7Q96B45 105 aa13.7□□□□□ -0.22
DDX39A-207ENST00000588542 A0A087WWC5 75 aa13.69□□□□□ -0.22
DDX39A-207ENST00000588542 H7C1H1 209 aa13.69□□□□□ -0.22
DDX39A-207ENST00000588542 LINC01556Q5JQF7 62 aa13.69□□□□□ -0.22
DDX39A-207ENST00000588542 RASL11AQ6T310 242 aa13.69□□□□□ -0.22
DDX39A-207ENST00000588542 NAT8BQ9UHF3 227 aa13.69□□□□□ -0.22
DDX39A-207ENST00000588542 PNRC1Q12796 327 aaPredicted RBP13.68□□□□□ -0.22
DDX39A-207ENST00000588542 SMIM15Q7Z3B0 74 aa13.68□□□□□ -0.22
DDX39A-207ENST00000588542 GATD1Q8NB37 220 aa13.68□□□□□ -0.22
DDX39A-207ENST00000588542 DNAJC30Q96LL9 226 aa13.68□□□□□ -0.22
DDX39A-207ENST00000588542 DNAH11Q96DT5 4516 aa13.68□□□□□ -0.22
DDX39A-207ENST00000588542 TRAV9-2A0A087WT02 112 aa13.67□□□□□ -0.22
DDX39A-207ENST00000588542 TMEM218A2RU14 115 aa13.67□□□□□ -0.22
DDX39A-207ENST00000588542 PRSS29PA6NIE9 313 aa13.67□□□□□ -0.22
DDX39A-207ENST00000588542 K7EP13 123 aa13.67□□□□□ -0.22
DDX39A-207ENST00000588542 ADCYAP1P18509 176 aa13.67□□□□□ -0.22
DDX39A-207ENST00000588542 BTF3P20290 206 aaKnown RBP13.67□□□□□ -0.22
DDX39A-207ENST00000588542 COMMD7Q86VX2 200 aa13.67□□□□□ -0.22
DDX39A-207ENST00000588542 TRAV26-2A0A0B4J265 109 aa13.66□□□□□ -0.22
DDX39A-207ENST00000588542 LINC00862A6NCI5 91 aa13.66□□□□□ -0.22
DDX39A-207ENST00000588542 Q8N3U1 123 aa13.66□□□□□ -0.22
DDX39A-207ENST00000588542 TMEM191AQ9H0A3 160 aa13.66□□□□□ -0.22
DDX39A-207ENST00000588542 NIT2Q9NQR4 276 aa13.66□□□□□ -0.22
DDX39A-207ENST00000588542 TNFRSF18Q9Y5U5 241 aa13.66□□□□□ -0.22
DDX39A-207ENST00000588542 RIGQ13278 110 aa13.65□□□□□ -0.22
DDX39A-207ENST00000588542 DAZ4Q86SG3 579 aaKnown RBP13.65□□□□□ -0.22
DDX39A-207ENST00000588542 DAZ3Q9NR90 486 aaKnown RBP13.65□□□□□ -0.22
DDX39A-207ENST00000588542 TRBV6-8A0A0A6YYG3 113 aa13.64□□□□□ -0.23
DDX39A-207ENST00000588542 A0A1B0GVY2 172 aa13.64□□□□□ -0.23
DDX39A-207ENST00000588542 IGHV3-30P01768 117 aa13.64□□□□□ -0.23
DDX39A-207ENST00000588542 IGHV3-33P01772 117 aa13.64□□□□□ -0.23
DDX39A-207ENST00000588542 IGHV3-30-3P0DP02 117 aa13.64□□□□□ -0.23
DDX39A-207ENST00000588542 IGHV3-30-5P0DP03 117 aa13.64□□□□□ -0.23
DDX39A-207ENST00000588542 Q6ZRN7 208 aaPredicted RBP13.64□□□□□ -0.23
DDX39A-207ENST00000588542 NTM-AS1Q6ZSK4 140 aa13.64□□□□□ -0.23
DDX39A-207ENST00000588542 PPP1R2P9O14990 202 aa13.63□□□□□ -0.23
DDX39A-207ENST00000588542 TNP2Q05952 138 aa13.63□□□□□ -0.23
DDX39A-207ENST00000588542 NIT1Q86X76 327 aa13.63□□□□□ -0.23
DDX39A-207ENST00000588542 C10orf126Q8N4M7 172 aa13.63□□□□□ -0.23
DDX39A-207ENST00000588542 RNF185Q96GF1 192 aa13.63□□□□□ -0.23
DDX39A-207ENST00000588542 BIRC6Q9NR09 4857 aa13.63□□□□□ -0.23
DDX39A-207ENST00000588542 PKHD1P08F94 4074 aa13.62□□□□□ -0.23
DDX39A-207ENST00000588542 F8W036 122 aa13.62□□□□□ -0.23
DDX39A-207ENST00000588542 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.62□□□□□ -0.23
DDX39A-207ENST00000588542 FRZBQ92765 325 aa13.62□□□□□ -0.23
DDX39A-207ENST00000588542 RPL39LQ96EH5 51 aaKnown RBP13.62□□□□□ -0.23
DDX39A-207ENST00000588542 IBA57-AS1B1ANH7 110 aa13.61□□□□□ -0.23
DDX39A-207ENST00000588542 GAS8-AS1O95177 125 aa13.61□□□□□ -0.23
DDX39A-207ENST00000588542 RAB4AP20338 218 aa13.61□□□□□ -0.23
DDX39A-207ENST00000588542 AMN1Q8IY45 258 aa13.61□□□□□ -0.23
DDX39A-207ENST00000588542 ANAPC16Q96DE5 110 aa13.61□□□□□ -0.23
DDX39A-207ENST00000588542 MT-ND4LP03901 98 aa13.6□□□□□ -0.23
DDX39A-207ENST00000588542 TMEM97Q5BJF2 176 aa13.6□□□□□ -0.23
DDX39A-207ENST00000588542 SEC11CQ9BY50 192 aa13.6□□□□□ -0.23
DDX39A-207ENST00000588542 A0A1B0GXF2 115 aa13.59□□□□□ -0.23
DDX39A-207ENST00000588542 A0A1B0GW15 77 aa13.58□□□□□ -0.24
DDX39A-207ENST00000588542 CAMPP49913 170 aa13.58□□□□□ -0.24
DDX39A-207ENST00000588542 MRPL54Q6P161 138 aaKnown RBP13.58□□□□□ -0.24
DDX39A-207ENST00000588542 NFE4Q86UQ8 179 aa13.58□□□□□ -0.24
DDX39A-207ENST00000588542 IQCJQ1A5X6 159 aa13.57□□□□□ -0.24
DDX39A-207ENST00000588542 C10orf91Q5T1B1 145 aa13.57□□□□□ -0.24
DDX39A-207ENST00000588542 TRBV6-5A0A0K0K1A5 114 aa13.56□□□□□ -0.24
DDX39A-207ENST00000588542 LAGE3Q14657 143 aa13.56□□□□□ -0.24
DDX39A-207ENST00000588542 FAM104BQ5XKR9 115 aa13.56□□□□□ -0.24
DDX39A-207ENST00000588542 DEFB104AQ8WTQ1 72 aa13.56□□□□□ -0.24
DDX39A-207ENST00000588542 MRAP2Q96G30 205 aa13.56□□□□□ -0.24
DDX39A-207ENST00000588542 CHCHD7Q9BUK0 85 aa13.56□□□□□ -0.24
DDX39A-207ENST00000588542 TRBV25-1A0A075B6N4 114 aa13.55□□□□□ -0.24
DDX39A-207ENST00000588542 IGHV1-24A0A0C4DH33 117 aa13.55□□□□□ -0.24
DDX39A-207ENST00000588542 RPS10P46783 165 aaKnown RBP13.55□□□□□ -0.24
DDX39A-207ENST00000588542 HBBP68871 147 aa13.55□□□□□ -0.24
DDX39A-207ENST00000588542 KCNIP4Q6PIL6 250 aa13.55□□□□□ -0.24
DDX39A-207ENST00000588542 CHCHD5Q9BSY4 110 aa13.55□□□□□ -0.24
DDX39A-207ENST00000588542 URGCP-MRPS24S4R325 110 aa13.55□□□□□ -0.24
DDX39A-207ENST00000588542 DYNC1H1Q14204 4646 aaKnown RBP13.54□□□□□ -0.24
DDX39A-207ENST00000588542 A0A087WX48 190 aa13.54□□□□□ -0.24
DDX39A-207ENST00000588542 SDHAF1A6NFY7 115 aa13.54□□□□□ -0.24
DDX39A-207ENST00000588542 SMKR1H3BMG3 65 aa13.54□□□□□ -0.24
DDX39A-207ENST00000588542 MRPL51Q4U2R6 128 aaKnown RBP13.54□□□□□ -0.24
DDX39A-207ENST00000588542 MPV17L2Q567V2 206 aa13.54□□□□□ -0.24
DDX39A-207ENST00000588542 ATP5L2Q7Z4Y8 100 aa13.54□□□□□ -0.24
DDX39A-207ENST00000588542 Q9HAA7 133 aa13.54□□□□□ -0.24
DDX39A-207ENST00000588542 TMEM262E9PQX1 116 aa13.53□□□□□ -0.24
DDX39A-207ENST00000588542 NCR2O95944 276 aa13.53□□□□□ -0.24
DDX39A-207ENST00000588542 COTL1Q14019 142 aa13.53□□□□□ -0.24
DDX39A-207ENST00000588542 S100A8P05109 93 aa13.52□□□□□ -0.25
DDX39A-207ENST00000588542 GAGE6Q13070 117 aa13.52□□□□□ -0.25
DDX39A-207ENST00000588542 ATRAIDQ6UW56 229 aa13.52□□□□□ -0.25
DDX39A-207ENST00000588542 NRACQ8N912 160 aa13.52□□□□□ -0.25
DDX39A-207ENST00000588542 KLK12Q9UKR0 248 aa13.52□□□□□ -0.25
DDX39A-207ENST00000588542 CARHSP1Q9Y2V2 147 aaKnown RBP13.52□□□□□ -0.25
DDX39A-207ENST00000588542 POLR2KP53803 58 aaKnown RBP13.51□□□□□ -0.25
DDX39A-207ENST00000588542 TMEM243Q9BU79 118 aa13.51□□□□□ -0.25
DDX39A-207ENST00000588542 TMEM70Q9BUB7 260 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms