RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 MYOM3Q5VTT5 1437 aa0.05□□□□□ -2.4
SMCHD1-204ENST00000581226 TRGV1A0A0A0MS02 117 aa0.05□□□□□ -2.4
SMCHD1-204ENST00000581226 TRBV7-1A0A0A6YYK4 115 aa0.05□□□□□ -2.4
SMCHD1-204ENST00000581226 HIVEP3Q5T1R4 2406 aa0.04□□□□□ -2.4
SMCHD1-204ENST00000581226 DMBT1Q9UGM3 2413 aaPredicted RBP0.04□□□□□ -2.4
SMCHD1-204ENST00000581226 PATJQ8NI35 1801 aa0.04□□□□□ -2.4
SMCHD1-204ENST00000581226 NMBP08949 121 aa0.04□□□□□ -2.4
SMCHD1-204ENST00000581226 TPT1P8Q9HAU6 139 aa0.04□□□□□ -2.4
SMCHD1-204ENST00000581226 TMEM242Q9NWH2 141 aa0.04□□□□□ -2.4
SMCHD1-204ENST00000581226 V9GYV3 84 aa0.04□□□□□ -2.4
SMCHD1-204ENST00000581226 IFT172Q9UG01 1749 aa0.04□□□□□ -2.4
SMCHD1-204ENST00000581226 NWD2Q9ULI1 1742 aa0.04□□□□□ -2.4
SMCHD1-204ENST00000581226 ZMYM4Q5VZL5 1548 aa0.03□□□□□ -2.4
SMCHD1-204ENST00000581226 EDDM3BP56851 147 aa0.03□□□□□ -2.4
SMCHD1-204ENST00000581226 RRAS2P62070 204 aaPredicted RBP0.03□□□□□ -2.4
SMCHD1-204ENST00000581226 SMCO1Q147U7 214 aa0.03□□□□□ -2.4
SMCHD1-204ENST00000581226 Q6ZRX8 168 aa0.03□□□□□ -2.4
SMCHD1-204ENST00000581226 DPH3Q96FX2 82 aa0.03□□□□□ -2.4
SMCHD1-204ENST00000581226 PRDM2Q13029 1718 aa0.03□□□□□ -2.4
SMCHD1-204ENST00000581226 GRIN2AQ12879 1464 aa0.03□□□□□ -2.41
SMCHD1-204ENST00000581226 FAM208BQ5VWN6 2430 aa0.02□□□□□ -2.41
SMCHD1-204ENST00000581226 G3V318 75 aa0.02□□□□□ -2.41
SMCHD1-204ENST00000581226 IL5P05113 134 aa0.02□□□□□ -2.41
SMCHD1-204ENST00000581226 COPZ1P61923 177 aa0.02□□□□□ -2.41
SMCHD1-204ENST00000581226 SCIMPQ6UWF3 145 aa0.02□□□□□ -2.41
SMCHD1-204ENST00000581226 RPRMQ9NS64 109 aa0.02□□□□□ -2.41
SMCHD1-204ENST00000581226 ACYP2P14621 99 aa0.01□□□□□ -2.41
SMCHD1-204ENST00000581226 FAM74A4Q5TZK3 123 aa0.01□□□□□ -2.41
SMCHD1-204ENST00000581226 WFDC6Q9BQY6 131 aa0.01□□□□□ -2.41
SMCHD1-204ENST00000581226 PSMG3Q9BT73 122 aaPredicted RBP0.01□□□□□ -2.41
SMCHD1-204ENST00000581226 DAPK1P53355 1430 aa0.01□□□□□ -2.41
SMCHD1-204ENST00000581226 PLXNB2O15031 1838 aa0.01□□□□□ -2.41
SMCHD1-204ENST00000581226 NDUFA2O43678 99 aa0□□□□□ -2.41
SMCHD1-204ENST00000581226 CBLN1P23435 193 aa0□□□□□ -2.41
SMCHD1-204ENST00000581226 INSL4Q14641 139 aa0□□□□□ -2.41
SMCHD1-204ENST00000581226 S100A7L2Q5SY68 101 aa0□□□□□ -2.41
SMCHD1-204ENST00000581226 TMEM191AQ9H0A3 160 aa0□□□□□ -2.41
SMCHD1-204ENST00000581226 CSMD3Q7Z407 3707 aa-0.01□□□□□ -2.41
SMCHD1-204ENST00000581226 TMEM14DPA8MWL7 114 aa-0.01□□□□□ -2.41
SMCHD1-204ENST00000581226 SPTSSBQ8NFR3 76 aa-0.01□□□□□ -2.41
SMCHD1-204ENST00000581226 SPTSSAQ969W0 71 aa-0.01□□□□□ -2.41
SMCHD1-204ENST00000581226 SPTBN2O15020 2390 aa-0.01□□□□□ -2.41
SMCHD1-204ENST00000581226 WNK2Q9Y3S1 2297 aa-0.01□□□□□ -2.41
SMCHD1-204ENST00000581226 NCOR1O75376 2440 aa-0.02□□□□□ -2.41
SMCHD1-204ENST00000581226 C2CD3Q4AC94 2353 aa-0.02□□□□□ -2.41
SMCHD1-204ENST00000581226 CASKIN1Q8WXD9 1431 aa-0.02□□□□□ -2.41
SMCHD1-204ENST00000581226 NDUFB6O95139 128 aa-0.02□□□□□ -2.41
SMCHD1-204ENST00000581226 APODP05090 189 aa-0.02□□□□□ -2.41
SMCHD1-204ENST00000581226 GUCA1AP43080 201 aaPredicted RBP-0.02□□□□□ -2.41
SMCHD1-204ENST00000581226 Q5BKY6 102 aa-0.02□□□□□ -2.41
SMCHD1-204ENST00000581226 LSM10Q969L4 123 aaKnown RBP-0.02□□□□□ -2.41
SMCHD1-204ENST00000581226 PFDN5Q99471 154 aa-0.02□□□□□ -2.41
SMCHD1-204ENST00000581226 LRRC37A3O60309 1634 aa-0.02□□□□□ -2.41
SMCHD1-204ENST00000581226 DOCK2Q92608 1830 aa-0.03□□□□□ -2.41
SMCHD1-204ENST00000581226 ZNF236Q9UL36 1845 aa-0.03□□□□□ -2.41
SMCHD1-204ENST00000581226 ARAP2Q8WZ64 1704 aa-0.03□□□□□ -2.41
SMCHD1-204ENST00000581226 PIPP12273 146 aaPredicted RBP-0.03□□□□□ -2.41
SMCHD1-204ENST00000581226 PI4KAP42356 2102 aa-0.03□□□□□ -2.41
SMCHD1-204ENST00000581226 ZNF818PQ6ZRF7 136 aa-0.03□□□□□ -2.41
SMCHD1-204ENST00000581226 KCNRGQ8N5I3 272 aa-0.03□□□□□ -2.41
SMCHD1-204ENST00000581226 SPRR2GQ9BYE4 73 aa-0.03□□□□□ -2.41
SMCHD1-204ENST00000581226 PLCE1Q9P212 2302 aa-0.03□□□□□ -2.41
SMCHD1-204ENST00000581226 ZNF518AQ6AHZ1 1483 aa-0.03□□□□□ -2.41
SMCHD1-204ENST00000581226 TRAV1-2A0A0B4J238 106 aa-0.04□□□□□ -2.42
SMCHD1-204ENST00000581226 HIST1H1DP16402 221 aaKnown RBP-0.04□□□□□ -2.42
SMCHD1-204ENST00000581226 CCL8P80075 99 aa-0.04□□□□□ -2.42
SMCHD1-204ENST00000581226 COX6A2Q02221 97 aa-0.04□□□□□ -2.42
SMCHD1-204ENST00000581226 RPL7L1Q6DKI1 246 aaKnown RBP-0.04□□□□□ -2.42
SMCHD1-204ENST00000581226 LINC00312Q9Y6C7 94 aa-0.04□□□□□ -2.42
SMCHD1-204ENST00000581226 IFT140Q96RY7 1462 aa-0.04□□□□□ -2.42
SMCHD1-204ENST00000581226 APOC4-APOC2K7ER74 178 aa-0.05□□□□□ -2.42
SMCHD1-204ENST00000581226 SNCGO76070 127 aa-0.05□□□□□ -2.42
SMCHD1-204ENST00000581226 IFNA17P01571 189 aa-0.05□□□□□ -2.42
SMCHD1-204ENST00000581226 ARPC4P59998 168 aa-0.05□□□□□ -2.42
SMCHD1-204ENST00000581226 Q5VV11 94 aa-0.05□□□□□ -2.42
SMCHD1-204ENST00000581226 TCEAL4Q96EI5 215 aa-0.05□□□□□ -2.42
SMCHD1-204ENST00000581226 SEC11CQ9BY50 192 aa-0.05□□□□□ -2.42
SMCHD1-204ENST00000581226 CACNA1AO00555 2505 aa-0.05□□□□□ -2.42
SMCHD1-204ENST00000581226 SYNE2Q8WXH0 6885 aaKnown RBP-0.05□□□□□ -2.42
SMCHD1-204ENST00000581226 LAMC1P11047 1609 aa-0.05□□□□□ -2.42
SMCHD1-204ENST00000581226 WNK3Q9BYP7 1800 aa-0.06□□□□□ -2.42
SMCHD1-204ENST00000581226 ABCA2Q9BZC7 2435 aa-0.06□□□□□ -2.42
SMCHD1-204ENST00000581226 TRBV10-3A0A0K0K1G6 114 aa-0.06□□□□□ -2.42
SMCHD1-204ENST00000581226 GCHFRP30047 84 aa-0.06□□□□□ -2.42
SMCHD1-204ENST00000581226 SSBP3-AS1Q7Z2R9 100 aa-0.06□□□□□ -2.42
SMCHD1-204ENST00000581226 PTPRQQ9UMZ3 2332 aa-0.06□□□□□ -2.42
SMCHD1-204ENST00000581226 MBD5Q9P267 1494 aa-0.06□□□□□ -2.42
SMCHD1-204ENST00000581226 CHD6Q8TD26 2715 aa-0.06□□□□□ -2.42
SMCHD1-204ENST00000581226 TENM4Q6N022 2769 aa-0.06□□□□□ -2.42
SMCHD1-204ENST00000581226 SSPOA2VEC9 5147 aa-0.07□□□□□ -2.42
SMCHD1-204ENST00000581226 PXDNQ92626 1479 aa-0.07□□□□□ -2.42
SMCHD1-204ENST00000581226 A6NIN4 97 aa-0.07□□□□□ -2.42
SMCHD1-204ENST00000581226 GNG7O60262 68 aa-0.07□□□□□ -2.42
SMCHD1-204ENST00000581226 Q8N8P6 123 aa-0.07□□□□□ -2.42
SMCHD1-204ENST00000581226 LINC00470Q9BZP3 86 aa-0.07□□□□□ -2.42
SMCHD1-204ENST00000581226 AGPAT4-IT1Q9H0P7 198 aa-0.07□□□□□ -2.42
SMCHD1-204ENST00000581226 CCDC167Q9P0B6 97 aa-0.07□□□□□ -2.42
SMCHD1-204ENST00000581226 GPR98Q8WXG9 6306 aa-0.07□□□□□ -2.42
SMCHD1-204ENST00000581226 KDM3BQ7LBC6 1761 aa-0.07□□□□□ -2.42
SMCHD1-204ENST00000581226 CFTRP13569 1480 aa-0.08□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms