RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 M0QY20 66 aa12.68□□□□□ -0.38
VPS53-215ENST00000573028 IGHV3-30P01768 117 aa12.68□□□□□ -0.38
VPS53-215ENST00000573028 IGHV3-30-5P0DP03 117 aa12.68□□□□□ -0.38
VPS53-215ENST00000573028 POM121L12Q8N7R1 296 aa12.68□□□□□ -0.38
VPS53-215ENST00000573028 MAPK1IP1LQ8NDC0 245 aa12.68□□□□□ -0.38
VPS53-215ENST00000573028 SPATA25Q9BR10 227 aa12.68□□□□□ -0.38
VPS53-215ENST00000573028 ZNF580Q9UK33 172 aa12.68□□□□□ -0.38
VPS53-215ENST00000573028 A0A0J9YXV3 536 aa12.67□□□□□ -0.38
VPS53-215ENST00000573028 PRM2P04554 102 aa12.67□□□□□ -0.38
VPS53-215ENST00000573028 RNASE13Q5GAN3 156 aaKnown RBP12.67□□□□□ -0.38
VPS53-215ENST00000573028 SLC25A29Q8N8R3 303 aa12.67□□□□□ -0.38
VPS53-215ENST00000573028 A0A0J9YX75 114 aa12.67□□□□□ -0.38
VPS53-215ENST00000573028 LGALS9O00182 355 aa12.67□□□□□ -0.38
VPS53-215ENST00000573028 IGHV1OR15-1A0A075B7D0 117 aa12.67□□□□□ -0.38
VPS53-215ENST00000573028 P0DMU3 169 aa12.67□□□□□ -0.38
VPS53-215ENST00000573028 FAM231AP0DMU4 169 aa12.67□□□□□ -0.38
VPS53-215ENST00000573028 FAM231CP0DMU5 169 aa12.67□□□□□ -0.38
VPS53-215ENST00000573028 A4D1N5 150 aa12.66□□□□□ -0.38
VPS53-215ENST00000573028 KNCNA6PVL3 124 aa12.66□□□□□ -0.38
VPS53-215ENST00000573028 NACAE9PAV3 2078 aa12.66□□□□□ -0.38
VPS53-215ENST00000573028 K7EMT4 169 aa12.66□□□□□ -0.38
VPS53-215ENST00000573028 RPL32P62910 135 aaKnown RBP12.66□□□□□ -0.38
VPS53-215ENST00000573028 C10orf126Q8N4M7 172 aa12.66□□□□□ -0.38
VPS53-215ENST00000573028 VCX2Q9H322 139 aa12.66□□□□□ -0.38
VPS53-215ENST00000573028 PRO1854Q9UHT4 67 aa12.66□□□□□ -0.38
VPS53-215ENST00000573028 UBE2D3P61077 147 aa12.65□□□□□ -0.38
VPS53-215ENST00000573028 UBE2D2P62837 147 aa12.65□□□□□ -0.38
VPS53-215ENST00000573028 Q1RN00 199 aa12.65□□□□□ -0.38
VPS53-215ENST00000573028 DEFB112Q30KQ8 113 aa12.65□□□□□ -0.38
VPS53-215ENST00000573028 LYRM7Q5U5X0 104 aa12.65□□□□□ -0.38
VPS53-215ENST00000573028 CEMP1Q6PRD7 247 aaPredicted RBP12.65□□□□□ -0.38
VPS53-215ENST00000573028 C9orf85Q96MD7 179 aa12.65□□□□□ -0.38
VPS53-215ENST00000573028 SPXQ9BT56 116 aa12.65□□□□□ -0.38
VPS53-215ENST00000573028 CUBNO60494 3623 aa12.65□□□□□ -0.38
VPS53-215ENST00000573028 PROK1P58294 105 aa12.65□□□□□ -0.38
VPS53-215ENST00000573028 BEX4Q9NWD9 120 aaPredicted RBP12.65□□□□□ -0.38
VPS53-215ENST00000573028 TRPT1Q86TN4 253 aaKnown RBP12.64□□□□□ -0.39
VPS53-215ENST00000573028 PSMB8P28062 276 aa12.64□□□□□ -0.39
VPS53-215ENST00000573028 CFHR3Q02985 330 aa12.64□□□□□ -0.39
VPS53-215ENST00000573028 TLN2Q9Y4G6 2542 aa12.63□□□□□ -0.39
VPS53-215ENST00000573028 AMELXQ99217 191 aa12.63□□□□□ -0.39
VPS53-215ENST00000573028 TRBV6-5A0A0K0K1A5 114 aa12.63□□□□□ -0.39
VPS53-215ENST00000573028 PRSS2P07478 247 aa12.63□□□□□ -0.39
VPS53-215ENST00000573028 C20orf203Q8NBC4 194 aa12.63□□□□□ -0.39
VPS53-215ENST00000573028 A8MWV9 139 aa12.62□□□□□ -0.39
VPS53-215ENST00000573028 I3L3M4 83 aa12.62□□□□□ -0.39
VPS53-215ENST00000573028 BRI3O95415 125 aa12.62□□□□□ -0.39
VPS53-215ENST00000573028 MUSTN1Q8IVN3 82 aa12.62□□□□□ -0.39
VPS53-215ENST00000573028 K7EQG2 157 aa12.62□□□□□ -0.39
VPS53-215ENST00000573028 ZNF22P17026 224 aaPredicted RBP12.62□□□□□ -0.39
VPS53-215ENST00000573028 C2CD3Q4AC94 2353 aa12.62□□□□□ -0.39
VPS53-215ENST00000573028 DOPEY1Q5JWR5 2465 aa12.61□□□□□ -0.39
VPS53-215ENST00000573028 FHL3Q13643 280 aa12.61□□□□□ -0.39
VPS53-215ENST00000573028 CARD19Q96LW7 228 aa12.61□□□□□ -0.39
VPS53-215ENST00000573028 TMEM223A0PJW6 202 aa12.61□□□□□ -0.39
VPS53-215ENST00000573028 B4DSR2 109 aa12.61□□□□□ -0.39
VPS53-215ENST00000573028 C9JAW5 83 aa12.61□□□□□ -0.39
VPS53-215ENST00000573028 RHODO00212 210 aa12.61□□□□□ -0.39
VPS53-215ENST00000573028 SPINK8P0C7L1 97 aa12.61□□□□□ -0.39
VPS53-215ENST00000573028 CD28P10747 220 aa12.61□□□□□ -0.39
VPS53-215ENST00000573028 NPC2P61916 151 aa12.61□□□□□ -0.39
VPS53-215ENST00000573028 MT-ATP8P03928 68 aa12.6□□□□□ -0.39
VPS53-215ENST00000573028 SCGB1A1P11684 91 aa12.6□□□□□ -0.39
VPS53-215ENST00000573028 IGLV4-3A0A075B6K6 122 aa12.6□□□□□ -0.39
VPS53-215ENST00000573028 TRAV8-3A0A0A6YYJ7 113 aa12.6□□□□□ -0.39
VPS53-215ENST00000573028 LEPROTO15243 131 aa12.6□□□□□ -0.39
VPS53-215ENST00000573028 CIDEAO60543 219 aa12.6□□□□□ -0.39
VPS53-215ENST00000573028 DEFB136Q30KP8 78 aa12.6□□□□□ -0.39
VPS53-215ENST00000573028 TEN1Q86WV5 123 aa12.6□□□□□ -0.39
VPS53-215ENST00000573028 CDIP1Q9H305 208 aa12.6□□□□□ -0.39
VPS53-215ENST00000573028 Q9UF83 564 aa12.6□□□□□ -0.39
VPS53-215ENST00000573028 ANKRD17O75179 2603 aaKnown RBP12.6□□□□□ -0.39
VPS53-215ENST00000573028 A0A1B0GV72 72 aa12.6□□□□□ -0.39
VPS53-215ENST00000573028 CKS1BP61024 79 aa12.6□□□□□ -0.39
VPS53-215ENST00000573028 RHOHQ15669 191 aa12.6□□□□□ -0.39
VPS53-215ENST00000573028 NSUN5P1Q3KNT7 163 aa12.6□□□□□ -0.39
VPS53-215ENST00000573028 ANKRD29Q8N6D5 301 aa12.6□□□□□ -0.39
VPS53-215ENST00000573028 PPDPFLQ8WWR9 84 aa12.6□□□□□ -0.39
VPS53-215ENST00000573028 ERG28Q9UKR5 140 aa12.59□□□□□ -0.39
VPS53-215ENST00000573028 HIST2H2BDQ6DRA6 164 aa12.59□□□□□ -0.39
VPS53-215ENST00000573028 ZFYVE26Q68DK2 2539 aa12.59□□□□□ -0.39
VPS53-215ENST00000573028 TRBV20-1A0A075B6N2 111 aa12.58□□□□□ -0.39
VPS53-215ENST00000573028 WNK1Q9H4A3 2382 aa12.58□□□□□ -0.39
VPS53-215ENST00000573028 HOXD3P31249 432 aaPredicted RBP12.58□□□□□ -0.4
VPS53-215ENST00000573028 A8MZ25 164 aa12.58□□□□□ -0.4
VPS53-215ENST00000573028 EIF4EBP3O60516 100 aaPredicted RBP12.58□□□□□ -0.4
VPS53-215ENST00000573028 RBMY1A1P0DJD3 496 aaKnown RBP12.58□□□□□ -0.4
VPS53-215ENST00000573028 RBMY1CP0DJD4 496 aa12.58□□□□□ -0.4
VPS53-215ENST00000573028 DEFB131AP59861 70 aa12.58□□□□□ -0.4
VPS53-215ENST00000573028 RBMY1FQ15415 496 aaKnown RBP12.58□□□□□ -0.4
VPS53-215ENST00000573028 ATP6V0E2Q8NHE4 81 aa12.58□□□□□ -0.4
VPS53-215ENST00000573028 PRRC2AP48634 2157 aaKnown RBP12.58□□□□□ -0.4
VPS53-215ENST00000573028 XGP55808 180 aa12.57□□□□□ -0.4
VPS53-215ENST00000573028 SETD2Q9BYW2 2564 aaPredicted RBP12.57□□□□□ -0.4
VPS53-215ENST00000573028 DUX3Q96PT4 197 aa12.57□□□□□ -0.4
VPS53-215ENST00000573028 SLC25A20O43772 301 aa12.56□□□□□ -0.4
VPS53-215ENST00000573028 IGHV3-33P01772 117 aa12.56□□□□□ -0.4
VPS53-215ENST00000573028 TCTEX1D4Q5JR98 221 aa12.56□□□□□ -0.4
VPS53-215ENST00000573028 TNFRSF18Q9Y5U5 241 aa12.56□□□□□ -0.4
VPS53-215ENST00000573028 PTPN13Q12923 2485 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms