RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 SRSF9Q13242 221 aaKnown RBP eCLIP16.74■□□□□ 0.27
VPS53-211ENST00000571805 C20orf203Q8NBC4 194 aa16.74■□□□□ 0.27
VPS53-211ENST00000571805 FAM208BQ5VWN6 2430 aa16.74■□□□□ 0.27
VPS53-211ENST00000571805 A8MTW9 85 aa16.73■□□□□ 0.27
VPS53-211ENST00000571805 NFE4Q86UQ8 179 aa16.73■□□□□ 0.27
VPS53-211ENST00000571805 TEX48A0A1B0GUV7 120 aa16.73■□□□□ 0.27
VPS53-211ENST00000571805 I3L3M4 83 aa16.73■□□□□ 0.27
VPS53-211ENST00000571805 RPL24P83731 157 aaKnown RBP16.72■□□□□ 0.27
VPS53-211ENST00000571805 WFDC2Q14508 124 aa16.72■□□□□ 0.27
VPS53-211ENST00000571805 AMELXQ99217 191 aa16.72■□□□□ 0.27
VPS53-211ENST00000571805 CREBBPQ92793 2442 aa16.72■□□□□ 0.27
VPS53-211ENST00000571805 TMEM238LA0A1B0GVL6 79 aa16.72■□□□□ 0.27
VPS53-211ENST00000571805 A6NJY4 79 aa16.72■□□□□ 0.27
VPS53-211ENST00000571805 DEFB131AP59861 70 aa16.72■□□□□ 0.27
VPS53-211ENST00000571805 KRTAP10-9P60411 292 aa16.72■□□□□ 0.27
VPS53-211ENST00000571805 ZNF462Q96JM2 2506 aa16.71■□□□□ 0.27
VPS53-211ENST00000571805 Q8N2B8 174 aa16.71■□□□□ 0.27
VPS53-211ENST00000571805 BBC3Q96PG8 261 aaPredicted RBP16.71■□□□□ 0.27
VPS53-211ENST00000571805 PGPEP1Q9NXJ5 209 aa16.71■□□□□ 0.27
VPS53-211ENST00000571805 LRRK2Q5S007 2527 aa16.71■□□□□ 0.27
VPS53-211ENST00000571805 RBMY1BA6NDE4 496 aaKnown RBP16.7■□□□□ 0.26
VPS53-211ENST00000571805 RBMY1EA6NEQ0 496 aaKnown RBP16.7■□□□□ 0.26
VPS53-211ENST00000571805 H3BMM0 161 aa16.7■□□□□ 0.26
VPS53-211ENST00000571805 RBMY1DP0C7P1 496 aaKnown RBP16.7■□□□□ 0.26
VPS53-211ENST00000571805 EDA2RQ9HAV5 297 aa16.7■□□□□ 0.26
VPS53-211ENST00000571805 UBR5O95071 2799 aaPredicted RBP16.7■□□□□ 0.26
VPS53-211ENST00000571805 TEX15Q9BXT5 2789 aa16.7■□□□□ 0.26
VPS53-211ENST00000571805 ZFYVE26Q68DK2 2539 aa16.69■□□□□ 0.26
VPS53-211ENST00000571805 PRRC2AP48634 2157 aaKnown RBP16.69■□□□□ 0.26
VPS53-211ENST00000571805 SPANXB1Q9NS25 103 aaPredicted RBP16.69■□□□□ 0.26
VPS53-211ENST00000571805 PRO0461Q9UI25 63 aa16.69■□□□□ 0.26
VPS53-211ENST00000571805 SLC25A29Q8N8R3 303 aa16.69■□□□□ 0.26
VPS53-211ENST00000571805 J3QQQ9 107 aa16.68■□□□□ 0.26
VPS53-211ENST00000571805 HTN1P15515 57 aa16.68■□□□□ 0.26
VPS53-211ENST00000571805 USP24Q9UPU5 2620 aa16.68■□□□□ 0.26
VPS53-211ENST00000571805 PTPN13Q12923 2485 aa16.68■□□□□ 0.26
VPS53-211ENST00000571805 MRPL16Q9NX20 251 aaKnown RBP16.67■□□□□ 0.26
VPS53-211ENST00000571805 TMEM223A0PJW6 202 aa16.67■□□□□ 0.26
VPS53-211ENST00000571805 PROK1P58294 105 aa16.67■□□□□ 0.26
VPS53-211ENST00000571805 Q5PR19 223 aa16.67■□□□□ 0.26
VPS53-211ENST00000571805 IGLV4-3A0A075B6K6 122 aa16.66■□□□□ 0.26
VPS53-211ENST00000571805 TRAV2A0A0B4J234 112 aa16.66■□□□□ 0.26
VPS53-211ENST00000571805 IGHV3-30P01768 117 aa16.66■□□□□ 0.26
VPS53-211ENST00000571805 PRM2P04554 102 aa16.66■□□□□ 0.26
VPS53-211ENST00000571805 IGHV3-30-5P0DP03 117 aa16.66■□□□□ 0.26
VPS53-211ENST00000571805 GAGE13Q4V321 117 aa16.66■□□□□ 0.26
VPS53-211ENST00000571805 TMEM61Q8N0U2 210 aa16.66■□□□□ 0.26
VPS53-211ENST00000571805 SPAG8Q99932 426 aaPredicted RBP16.66■□□□□ 0.26
VPS53-211ENST00000571805 IGHV3-73A0A0B4J1V6 119 aa16.66■□□□□ 0.26
VPS53-211ENST00000571805 COTL1Q14019 142 aa16.66■□□□□ 0.26
VPS53-211ENST00000571805 DUX3Q96PT4 197 aa16.65■□□□□ 0.26
VPS53-211ENST00000571805 TSPAN13O95857 204 aa16.65■□□□□ 0.26
VPS53-211ENST00000571805 LEPROTO15243 131 aa16.64■□□□□ 0.25
VPS53-211ENST00000571805 ZNF22P17026 224 aaPredicted RBP16.64■□□□□ 0.25
VPS53-211ENST00000571805 FAM104AQ969W3 186 aa16.64■□□□□ 0.25
VPS53-211ENST00000571805 LGALS3P17931 250 aaKnown RBP16.64■□□□□ 0.25
VPS53-211ENST00000571805 DEFB113Q30KQ7 82 aa16.64■□□□□ 0.25
VPS53-211ENST00000571805 NDUFA11Q86Y39 141 aa16.64■□□□□ 0.25
VPS53-211ENST00000571805 PEMTQ9UBM1 199 aa16.64■□□□□ 0.25
VPS53-211ENST00000571805 NACAE9PAV3 2078 aa16.64■□□□□ 0.25
VPS53-211ENST00000571805 RHODO00212 210 aa16.63■□□□□ 0.25
VPS53-211ENST00000571805 C4orf3Q8WVX3 66 aa16.63■□□□□ 0.25
VPS53-211ENST00000571805 VCX2Q9H322 139 aa16.63■□□□□ 0.25
VPS53-211ENST00000571805 A0A0J9YXV3 536 aa16.63■□□□□ 0.25
VPS53-211ENST00000571805 M0R2P5 195 aa16.63■□□□□ 0.25
VPS53-211ENST00000571805 APOMO95445 188 aa16.63■□□□□ 0.25
VPS53-211ENST00000571805 SH2D6Q7Z4S9 175 aa16.63■□□□□ 0.25
VPS53-211ENST00000571805 PYGO1Q9Y3Y4 419 aa16.63■□□□□ 0.25
VPS53-211ENST00000571805 ETDBQ3ZM63 59 aa16.62■□□□□ 0.25
VPS53-211ENST00000571805 MTURNQ8N3F0 131 aa16.62■□□□□ 0.25
VPS53-211ENST00000571805 ABCA12Q86UK0 2595 aa16.62■□□□□ 0.25
VPS53-211ENST00000571805 NAV2Q8IVL1 2488 aa16.62■□□□□ 0.25
VPS53-211ENST00000571805 DLX4Q92988 240 aaPredicted RBP16.62■□□□□ 0.25
VPS53-211ENST00000571805 MAP6D1Q9H9H5 199 aa16.62■□□□□ 0.25
VPS53-211ENST00000571805 A8MWV9 139 aa16.61■□□□□ 0.25
VPS53-211ENST00000571805 CFC1BP0CG36 223 aa16.61■□□□□ 0.25
VPS53-211ENST00000571805 CFC1P0CG37 223 aa16.61■□□□□ 0.25
VPS53-211ENST00000571805 PIK3CD-AS1Q5SR53 167 aa16.61■□□□□ 0.25
VPS53-211ENST00000571805 Q9UF83 564 aa16.61■□□□□ 0.25
VPS53-211ENST00000571805 UBE2D3P61077 147 aa16.6■□□□□ 0.25
VPS53-211ENST00000571805 UBE2D2P62837 147 aa16.6■□□□□ 0.25
VPS53-211ENST00000571805 Q6ZSN1 163 aa16.6■□□□□ 0.25
VPS53-211ENST00000571805 LRRC75A-AS1Q8N1F1 130 aa16.6■□□□□ 0.25
VPS53-211ENST00000571805 PTH2Q96A98 100 aa16.6■□□□□ 0.25
VPS53-211ENST00000571805 ZNF415Q09FC8 603 aa16.59■□□□□ 0.25
VPS53-211ENST00000571805 ZNF843Q8N446 348 aa16.59■□□□□ 0.25
VPS53-211ENST00000571805 Q96MF0 132 aa16.59■□□□□ 0.25
VPS53-211ENST00000571805 TNFRSF18Q9Y5U5 241 aa16.59■□□□□ 0.25
VPS53-211ENST00000571805 MYO9AB2RTY4 2548 aa16.59■□□□□ 0.25
VPS53-211ENST00000571805 CD28P10747 220 aa16.58■□□□□ 0.25
VPS53-211ENST00000571805 DEFB114Q30KQ6 69 aa16.58■□□□□ 0.25
VPS53-211ENST00000571805 CFAP126Q5VTH2 177 aa16.58■□□□□ 0.24
VPS53-211ENST00000571805 HIST2H2BDQ6DRA6 164 aa16.58■□□□□ 0.24
VPS53-211ENST00000571805 SFTA2Q6UW10 78 aa16.57■□□□□ 0.24
VPS53-211ENST00000571805 C11orf72Q8NBR9 251 aa16.57■□□□□ 0.24
VPS53-211ENST00000571805 AKAP9Q99996 3911 aa16.57■□□□□ 0.24
VPS53-211ENST00000571805 IGHV3-64A0A075B6Q5 118 aa16.57■□□□□ 0.24
VPS53-211ENST00000571805 LOC107984156A0A0G2JMH3 177 aa16.57■□□□□ 0.24
VPS53-211ENST00000571805 ARL17AQ8IVW1 177 aa16.57■□□□□ 0.24
VPS53-211ENST00000571805 LINC00467Q9BRT7 94 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms