RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 CENPWQ5EE01 88 aa6.93□□□□□ -1.3
CCDC88C-206ENST00000553437 LINC01556Q5JQF7 62 aa6.93□□□□□ -1.3
CCDC88C-206ENST00000553437 PRR27Q6MZM9 219 aa6.93□□□□□ -1.3
CCDC88C-206ENST00000553437 SPATA12Q7Z6I5 190 aa6.93□□□□□ -1.3
CCDC88C-206ENST00000553437 OR10AG1Q8NH19 301 aa6.93□□□□□ -1.3
CCDC88C-206ENST00000553437 MSRB1Q9NZV6 116 aa6.93□□□□□ -1.3
CCDC88C-206ENST00000553437 TRBV20OR9-2A0A075B6H5 130 aa6.92□□□□□ -1.3
CCDC88C-206ENST00000553437 TRAV8-6A0A0B4J262 113 aa6.92□□□□□ -1.3
CCDC88C-206ENST00000553437 PDE6DO43924 150 aa6.92□□□□□ -1.3
CCDC88C-206ENST00000553437 OR5AL1P0C617 328 aa6.92□□□□□ -1.3
CCDC88C-206ENST00000553437 OR10J3Q5JRS4 329 aa6.92□□□□□ -1.3
CCDC88C-206ENST00000553437 FAM74A4Q5TZK3 123 aa6.92□□□□□ -1.3
CCDC88C-206ENST00000553437 NFE4Q86UQ8 179 aa6.92□□□□□ -1.3
CCDC88C-206ENST00000553437 C19orf71A6NCJ1 209 aa6.91□□□□□ -1.3
CCDC88C-206ENST00000553437 IBA57-AS1B1ANH7 110 aa6.91□□□□□ -1.3
CCDC88C-206ENST00000553437 PNRC1Q12796 327 aaPredicted RBP6.91□□□□□ -1.3
CCDC88C-206ENST00000553437 C10orf126Q8N4M7 172 aa6.91□□□□□ -1.3
CCDC88C-206ENST00000553437 SMIM12Q96EX1 92 aa6.91□□□□□ -1.3
CCDC88C-206ENST00000553437 VAX2Q9UIW0 290 aa6.91□□□□□ -1.3
CCDC88C-206ENST00000553437 MUC21A0A0G2JKD1 596 aa6.9□□□□□ -1.3
CCDC88C-206ENST00000553437 TRBV10-1A0A0K0K1A3 114 aa6.9□□□□□ -1.3
CCDC88C-206ENST00000553437 MUC21A0A140T8X8 626 aa6.9□□□□□ -1.3
CCDC88C-206ENST00000553437 RAB5AP20339 215 aa6.9□□□□□ -1.3
CCDC88C-206ENST00000553437 GNG4P50150 75 aa6.9□□□□□ -1.3
CCDC88C-206ENST00000553437 A0A087WTM6 91 aa6.89□□□□□ -1.31
CCDC88C-206ENST00000553437 IGHV3-30P01768 117 aa6.89□□□□□ -1.31
CCDC88C-206ENST00000553437 IGHV3-33P01772 117 aa6.89□□□□□ -1.31
CCDC88C-206ENST00000553437 IGLC6P0CF74 106 aa6.89□□□□□ -1.31
CCDC88C-206ENST00000553437 IGHV3-30-3P0DP02 117 aa6.89□□□□□ -1.31
CCDC88C-206ENST00000553437 IGHV3-30-5P0DP03 117 aa6.89□□□□□ -1.31
CCDC88C-206ENST00000553437 GZMBP10144 247 aa6.89□□□□□ -1.31
CCDC88C-206ENST00000553437 ERVFC1-1P60608 527 aa6.89□□□□□ -1.31
CCDC88C-206ENST00000553437 RAB4BP61018 213 aa6.89□□□□□ -1.31
CCDC88C-206ENST00000553437 OR2D3Q8NGH3 330 aa6.89□□□□□ -1.31
CCDC88C-206ENST00000553437 OR10G8Q8NGN5 311 aa6.89□□□□□ -1.31
CCDC88C-206ENST00000553437 YPEL4Q96NS1 127 aa6.89□□□□□ -1.31
CCDC88C-206ENST00000553437 KRTAP4-5Q9BYR2 181 aa6.89□□□□□ -1.31
CCDC88C-206ENST00000553437 KIF25-AS1Q9Y6Z4 181 aa6.89□□□□□ -1.31
CCDC88C-206ENST00000553437 CDK2AP2O75956 126 aa6.88□□□□□ -1.31
CCDC88C-206ENST00000553437 FUSP35637 526 aaKnown RBP eCLIP6.88□□□□□ -1.31
CCDC88C-206ENST00000553437 CEBPGP53567 150 aa6.88□□□□□ -1.31
CCDC88C-206ENST00000553437 RPS20P60866 119 aaKnown RBP6.88□□□□□ -1.31
CCDC88C-206ENST00000553437 UBE2D3P61077 147 aa6.88□□□□□ -1.31
CCDC88C-206ENST00000553437 UBE2D2P62837 147 aa6.88□□□□□ -1.31
CCDC88C-206ENST00000553437 SPANXN1Q5VSR9 72 aa6.88□□□□□ -1.31
CCDC88C-206ENST00000553437 LINC00518Q8N0U6 118 aa6.88□□□□□ -1.31
CCDC88C-206ENST00000553437 ISOC2Q96AB3 205 aa6.88□□□□□ -1.31
CCDC88C-206ENST00000553437 DAZAP1Q96EP5 407 aaKnown RBP6.88□□□□□ -1.31
CCDC88C-206ENST00000553437 PGPEP1Q9NXJ5 209 aa6.88□□□□□ -1.31
CCDC88C-206ENST00000553437 TRBV7-3A0A075B6L6 115 aa6.87□□□□□ -1.31
CCDC88C-206ENST00000553437 TMEM250H0YL14 139 aa6.87□□□□□ -1.31
CCDC88C-206ENST00000553437 S100A6P06703 90 aa6.87□□□□□ -1.31
CCDC88C-206ENST00000553437 SSTP61278 116 aa6.87□□□□□ -1.31
CCDC88C-206ENST00000553437 RPL36AP83881 106 aaKnown RBP6.87□□□□□ -1.31
CCDC88C-206ENST00000553437 FER1L6-AS1Q8NA97 138 aa6.87□□□□□ -1.31
CCDC88C-206ENST00000553437 NEXN-AS1Q8NBZ9 246 aa6.87□□□□□ -1.31
CCDC88C-206ENST00000553437 NUDT10Q8NFP7 164 aa6.87□□□□□ -1.31
CCDC88C-206ENST00000553437 OCC1Q8TAD7 63 aa6.87□□□□□ -1.31
CCDC88C-206ENST00000553437 RPL36ALQ969Q0 106 aaKnown RBP6.87□□□□□ -1.31
CCDC88C-206ENST00000553437 NUDT11Q96G61 164 aa6.87□□□□□ -1.31
CCDC88C-206ENST00000553437 CTDSP1Q9GZU7 261 aa6.87□□□□□ -1.31
CCDC88C-206ENST00000553437 TMEM242Q9NWH2 141 aa6.87□□□□□ -1.31
CCDC88C-206ENST00000553437 LRCOL1A6NCL2 159 aa6.86□□□□□ -1.31
CCDC88C-206ENST00000553437 K7EN84 100 aa6.86□□□□□ -1.31
CCDC88C-206ENST00000553437 EREGO14944 169 aa6.86□□□□□ -1.31
CCDC88C-206ENST00000553437 P01737 135 aa6.86□□□□□ -1.31
CCDC88C-206ENST00000553437 S100A8P05109 93 aa6.86□□□□□ -1.31
CCDC88C-206ENST00000553437 AKR1D1P51857 326 aa6.86□□□□□ -1.31
CCDC88C-206ENST00000553437 LAGE3Q14657 143 aa6.86□□□□□ -1.31
CCDC88C-206ENST00000553437 ZNF56Q15929 161 aa6.86□□□□□ -1.31
CCDC88C-206ENST00000553437 DAZ4Q86SG3 579 aaKnown RBP6.86□□□□□ -1.31
CCDC88C-206ENST00000553437 NIT1Q86X76 327 aa6.86□□□□□ -1.31
CCDC88C-206ENST00000553437 Q9HAA7 133 aa6.86□□□□□ -1.31
CCDC88C-206ENST00000553437 DAZ3Q9NR90 486 aaKnown RBP6.86□□□□□ -1.31
CCDC88C-206ENST00000553437 NAT8Q9UHE5 227 aa6.86□□□□□ -1.31
CCDC88C-206ENST00000553437 C5orf52A6NGY3 159 aa6.85□□□□□ -1.31
CCDC88C-206ENST00000553437 ZNF727A8MUV8 499 aa6.85□□□□□ -1.31
CCDC88C-206ENST00000553437 F2Z2F3 143 aa6.85□□□□□ -1.31
CCDC88C-206ENST00000553437 CACNG7P62955 275 aa6.85□□□□□ -1.31
CCDC88C-206ENST00000553437 LYZL1Q6UWQ5 148 aa6.85□□□□□ -1.31
CCDC88C-206ENST00000553437 AP1S3Q96PC3 154 aa6.85□□□□□ -1.31
CCDC88C-206ENST00000553437 TPPP3Q9BW30 176 aa6.85□□□□□ -1.31
CCDC88C-206ENST00000553437 KRTAP4-9Q9BYQ8 210 aa6.85□□□□□ -1.31
CCDC88C-206ENST00000553437 XKRY2A2RUG3 117 aa6.84□□□□□ -1.31
CCDC88C-206ENST00000553437 F5H697 171 aa6.84□□□□□ -1.31
CCDC88C-206ENST00000553437 M0QY20 66 aa6.84□□□□□ -1.31
CCDC88C-206ENST00000553437 RPS10P46783 165 aaKnown RBP6.84□□□□□ -1.31
CCDC88C-206ENST00000553437 ELOBQ15370 118 aa6.84□□□□□ -1.31
CCDC88C-206ENST00000553437 TMEM241Q24JQ0 296 aa6.84□□□□□ -1.31
CCDC88C-206ENST00000553437 CDPF1Q6NVV7 123 aa6.84□□□□□ -1.31
CCDC88C-206ENST00000553437 SMIM7Q9BQ49 75 aa6.84□□□□□ -1.31
CCDC88C-206ENST00000553437 KRTAP4-2Q9BYR5 136 aa6.84□□□□□ -1.31
CCDC88C-206ENST00000553437 RNASE7Q9H1E1 156 aaKnown RBP6.84□□□□□ -1.31
CCDC88C-206ENST00000553437 UBR4Q5T4S7 5183 aa6.83□□□□□ -1.32
CCDC88C-206ENST00000553437 TRBV6-8A0A0A6YYG3 113 aa6.83□□□□□ -1.32
CCDC88C-206ENST00000553437 PSCAO43653 123 aa6.83□□□□□ -1.32
CCDC88C-206ENST00000553437 SMIM6P0DI80 62 aa6.83□□□□□ -1.32
CCDC88C-206ENST00000553437 SMIM17P0DL12 118 aa6.83□□□□□ -1.32
CCDC88C-206ENST00000553437 NTF3P20783 257 aa6.83□□□□□ -1.32
CCDC88C-206ENST00000553437 CTRLP40313 264 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms