RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	ARL17A	Q8IVW1	177 aa		11.29	□□□□□ -0.6
CHFR-223	ENST00000544268	ZFP2	Q6ZN57	461 aa		11.29	□□□□□ -0.6
CHFR-223	ENST00000544268	C16orf92	Q96LL3	132 aa		11.29	□□□□□ -0.6
CHFR-223	ENST00000544268	IGHV7-4-1	A0A0J9YVY3	117 aa		11.28	□□□□□ -0.6
CHFR-223	ENST00000544268	UBE2D1	P51668	147 aa		11.28	□□□□□ -0.6
CHFR-223	ENST00000544268		U3KQE9	123 aa		11.28	□□□□□ -0.6
CHFR-223	ENST00000544268	MTOR	P42345	2549 aa		11.28	□□□□□ -0.6
CHFR-223	ENST00000544268	IGLV2-18	A0A075B6J9	118 aa		11.28	□□□□□ -0.6
CHFR-223	ENST00000544268		A8MWV9	139 aa		11.28	□□□□□ -0.6
CHFR-223	ENST00000544268	TMEM78	Q5T7P6	136 aa		11.28	□□□□□ -0.6
CHFR-223	ENST00000544268	NDUFV3	P56181	108 aa	Known RBP	11.27	□□□□□ -0.6
CHFR-223	ENST00000544268	SLC50A1	Q9BRV3	221 aa		11.27	□□□□□ -0.6
CHFR-223	ENST00000544268	CNFN	Q9BYD5	112 aa		11.27	□□□□□ -0.6
CHFR-223	ENST00000544268	TRBV20-1	A0A075B6N2	111 aa		11.27	□□□□□ -0.61
CHFR-223	ENST00000544268	FAM223B	A6NKX1	122 aa		11.27	□□□□□ -0.61
CHFR-223	ENST00000544268		H3BVH4	76 aa		11.27	□□□□□ -0.61
CHFR-223	ENST00000544268	RPL11	P62913	178 aa	Known RBP	11.27	□□□□□ -0.61
CHFR-223	ENST00000544268	GAGE2B	Q13066	116 aa		11.27	□□□□□ -0.61
CHFR-223	ENST00000544268	GAGE2E	Q4V326	116 aa		11.27	□□□□□ -0.61
CHFR-223	ENST00000544268	FAM223A	Q8IWN6	122 aa		11.27	□□□□□ -0.61
CHFR-223	ENST00000544268	SPANXA1	Q9NS26	97 aa		11.27	□□□□□ -0.61
CHFR-223	ENST00000544268	GAGE2D	Q9UEU5	116 aa		11.27	□□□□□ -0.61
CHFR-223	ENST00000544268	LGALS1	P09382	135 aa	Known RBP	11.26	□□□□□ -0.61
CHFR-223	ENST00000544268	CFHR3	Q02985	330 aa		11.26	□□□□□ -0.61
CHFR-223	ENST00000544268	C10orf99	Q6UWK7	81 aa		11.26	□□□□□ -0.61
CHFR-223	ENST00000544268	IGLV1-40	P01703	118 aa		11.26	□□□□□ -0.61
CHFR-223	ENST00000544268		H7C1H1	209 aa		11.25	□□□□□ -0.61
CHFR-223	ENST00000544268	ASIP	P42127	132 aa		11.25	□□□□□ -0.61
CHFR-223	ENST00000544268	SRSF2	Q01130	221 aa	Known RBP	11.25	□□□□□ -0.61
CHFR-223	ENST00000544268	LAGE3	Q14657	143 aa		11.25	□□□□□ -0.61
CHFR-223	ENST00000544268	SMR3A	Q99954	134 aa		11.25	□□□□□ -0.61
CHFR-223	ENST00000544268	SORL1	Q92673	2214 aa		11.25	□□□□□ -0.61
CHFR-223	ENST00000544268	TRAV12-1	A0A0B4J245	112 aa		11.25	□□□□□ -0.61
CHFR-223	ENST00000544268	RBAKDN	A6NC62	111 aa		11.25	□□□□□ -0.61
CHFR-223	ENST00000544268		F8VRH5	84 aa		11.25	□□□□□ -0.61
CHFR-223	ENST00000544268		H3BUA1	57 aa		11.25	□□□□□ -0.61
CHFR-223	ENST00000544268	DEFB104A	Q8WTQ1	72 aa		11.25	□□□□□ -0.61
CHFR-223	ENST00000544268	KIR2DL4	Q99706	377 aa		11.25	□□□□□ -0.61
CHFR-223	ENST00000544268	ZNF702P	Q9H963	129 aa		11.25	□□□□□ -0.61
CHFR-223	ENST00000544268	ANKRD29	Q8N6D5	301 aa		11.24	□□□□□ -0.61
CHFR-223	ENST00000544268	ZNF580	Q9UK33	172 aa		11.24	□□□□□ -0.61
CHFR-223	ENST00000544268	NF1	P21359	2839 aa		11.24	□□□□□ -0.61
CHFR-223	ENST00000544268	TCL1B	O95988	128 aa		11.24	□□□□□ -0.61
CHFR-223	ENST00000544268	SFTA2	Q6UW10	78 aa		11.24	□□□□□ -0.61
CHFR-223	ENST00000544268	C9orf47	Q6ZRZ4	202 aa		11.24	□□□□□ -0.61
CHFR-223	ENST00000544268	DNAJC30	Q96LL9	226 aa		11.24	□□□□□ -0.61
CHFR-223	ENST00000544268	SNCG	O76070	127 aa		11.23	□□□□□ -0.61
CHFR-223	ENST00000544268	IFITM1	P13164	125 aa		11.23	□□□□□ -0.61
CHFR-223	ENST00000544268	TTC32	Q5I0X7	151 aa		11.23	□□□□□ -0.61
CHFR-223	ENST00000544268	TMEM126A	Q9H061	195 aa		11.23	□□□□□ -0.61
CHFR-223	ENST00000544268		Q6Q795	121 aa		11.23	□□□□□ -0.61
CHFR-223	ENST00000544268	USMG5	Q96IX5	58 aa		11.23	□□□□□ -0.61
CHFR-223	ENST00000544268		M0R381	172 aa		11.22	□□□□□ -0.61
CHFR-223	ENST00000544268	CD7	P09564	240 aa		11.22	□□□□□ -0.61
CHFR-223	ENST00000544268	SPANXN1	Q5VSR9	72 aa		11.22	□□□□□ -0.61
CHFR-223	ENST00000544268	SRSF9	Q13242	221 aa	Known RBP eCLIP	11.21	□□□□□ -0.61
CHFR-223	ENST00000544268	ZFAND2A	Q8N6M9	145 aa		11.21	□□□□□ -0.61
CHFR-223	ENST00000544268	NRAC	Q8N912	160 aa		11.21	□□□□□ -0.61
CHFR-223	ENST00000544268	HIVEP2	P31629	2446 aa		11.21	□□□□□ -0.61
CHFR-223	ENST00000544268		F8WDY8	70 aa		11.21	□□□□□ -0.61
CHFR-223	ENST00000544268	SOCS3	O14543	225 aa		11.21	□□□□□ -0.61
CHFR-223	ENST00000544268	PSMB8	P28062	276 aa		11.21	□□□□□ -0.61
CHFR-223	ENST00000544268	FAM159A	Q6UWV7	190 aa		11.21	□□□□□ -0.61
CHFR-223	ENST00000544268	DNAJC9-AS1	A6NH13	148 aa		11.2	□□□□□ -0.62
CHFR-223	ENST00000544268	SCGB1C2	P0DMR2	95 aa		11.2	□□□□□ -0.62
CHFR-223	ENST00000544268	MEIG1	Q5JSS6	88 aa		11.2	□□□□□ -0.62
CHFR-223	ENST00000544268	NDUFA11	Q86Y39	141 aa		11.2	□□□□□ -0.62
CHFR-223	ENST00000544268	TMEM86B	Q8N661	226 aa		11.2	□□□□□ -0.62
CHFR-223	ENST00000544268	ESM1	Q9NQ30	184 aa		11.2	□□□□□ -0.62
CHFR-223	ENST00000544268	TRAV4	A0A0B4J268	109 aa		11.2	□□□□□ -0.62
CHFR-223	ENST00000544268	GNRH2	O43555	120 aa		11.2	□□□□□ -0.62
CHFR-223	ENST00000544268	RNASE4	P34096	147 aa	Known RBP	11.2	□□□□□ -0.62
CHFR-223	ENST00000544268	ZNF815P	A8K554	130 aa		11.19	□□□□□ -0.62
CHFR-223	ENST00000544268	SCGB1D4	Q6XE38	83 aa		11.19	□□□□□ -0.62
CHFR-223	ENST00000544268	PRADC1	Q9BSG0	188 aa		11.19	□□□□□ -0.62
CHFR-223	ENST00000544268	RHPN1-AS1	Q9BWJ2	59 aa		11.19	□□□□□ -0.62
CHFR-223	ENST00000544268		Q8N2B8	174 aa		11.18	□□□□□ -0.62
CHFR-223	ENST00000544268	RPL39L	Q96EH5	51 aa	Known RBP	11.18	□□□□□ -0.62
CHFR-223	ENST00000544268	NDUFA4	O00483	81 aa		11.18	□□□□□ -0.62
CHFR-223	ENST00000544268	LY6G6D	O95868	133 aa		11.18	□□□□□ -0.62
CHFR-223	ENST00000544268	C14orf178	Q8N769	122 aa	Predicted RBP	11.18	□□□□□ -0.62
CHFR-223	ENST00000544268	MUC4	Q99102	2169 aa		11.18	□□□□□ -0.62
CHFR-223	ENST00000544268	PLEKHB2	Q96CS7	222 aa		11.17	□□□□□ -0.62
CHFR-223	ENST00000544268	MRPL53	Q96EL3	112 aa	Known RBP	11.17	□□□□□ -0.62
CHFR-223	ENST00000544268	SLC25A20	O43772	301 aa		11.17	□□□□□ -0.62
CHFR-223	ENST00000544268	CRLF1	O75462	422 aa		11.17	□□□□□ -0.62
CHFR-223	ENST00000544268	NEXN-AS1	Q8NBZ9	246 aa		11.16	□□□□□ -0.62
CHFR-223	ENST00000544268	HIVEP1	P15822	2718 aa		11.16	□□□□□ -0.62
CHFR-223	ENST00000544268	LOC107984640	A0A0U1RRK4	108 aa		11.16	□□□□□ -0.62
CHFR-223	ENST00000544268	TMEM89	A2RUT3	159 aa		11.16	□□□□□ -0.62
CHFR-223	ENST00000544268	CYSRT1	A8MQ03	144 aa		11.16	□□□□□ -0.62
CHFR-223	ENST00000544268	HIST2H2BD	Q6DRA6	164 aa		11.16	□□□□□ -0.62
CHFR-223	ENST00000544268	C10orf126	Q8N4M7	172 aa		11.16	□□□□□ -0.62
CHFR-223	ENST00000544268	OR10J6P	Q8NGY7	276 aa		11.16	□□□□□ -0.62
CHFR-223	ENST00000544268	LINC00694	P0DN24	101 aa		11.15	□□□□□ -0.62
CHFR-223	ENST00000544268	RASL10A	Q92737	203 aa		11.15	□□□□□ -0.62
CHFR-223	ENST00000544268	SCGB3A1	Q96QR1	104 aa		11.15	□□□□□ -0.62
CHFR-223	ENST00000544268	JPT2	Q9H910	190 aa		11.15	□□□□□ -0.62
CHFR-223	ENST00000544268	IGKV3-20	P01619	116 aa		11.15	□□□□□ -0.63
CHFR-223	ENST00000544268		Q6ZSV7	163 aa		11.15	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms