RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 RNASE1P07998 156 aaKnown RBP7.26□□□□□ -1.25
SS18-205ENST00000542420 FXYD2P54710 66 aa7.26□□□□□ -1.25
SS18-205ENST00000542420 PMVKQ15126 192 aa7.26□□□□□ -1.25
SS18-205ENST00000542420 ETDBQ3ZM63 59 aa7.26□□□□□ -1.25
SS18-205ENST00000542420 RAX2Q96IS3 184 aa7.26□□□□□ -1.25
SS18-205ENST00000542420 MDFICQ9P1T7 246 aa7.26□□□□□ -1.25
SS18-205ENST00000542420 TMEM61Q8N0U2 210 aa7.26□□□□□ -1.25
SS18-205ENST00000542420 CHAC1Q9BUX1 264 aa7.26□□□□□ -1.25
SS18-205ENST00000542420 TRBV25-1A0A075B6N4 114 aa7.25□□□□□ -1.25
SS18-205ENST00000542420 TRAV12-2A0A075B6T6 113 aa7.25□□□□□ -1.25
SS18-205ENST00000542420 IGKV2D-26A0A0A0MRZ7 120 aa7.25□□□□□ -1.25
SS18-205ENST00000542420 F5H697 171 aa7.25□□□□□ -1.25
SS18-205ENST00000542420 HERVK_113P61574 105 aa7.25□□□□□ -1.25
SS18-205ENST00000542420 HERV-K104P63124 156 aa7.25□□□□□ -1.25
SS18-205ENST00000542420 ZNF56Q15929 161 aa7.25□□□□□ -1.25
SS18-205ENST00000542420 ZNF876PQ49A33 203 aa7.25□□□□□ -1.25
SS18-205ENST00000542420 GTSCR1Q86UQ5 136 aa7.25□□□□□ -1.25
SS18-205ENST00000542420 DLX4Q92988 240 aaPredicted RBP7.25□□□□□ -1.25
SS18-205ENST00000542420 DNAJC30Q96LL9 226 aa7.25□□□□□ -1.25
SS18-205ENST00000542420 FAM208BQ5VWN6 2430 aa7.25□□□□□ -1.25
SS18-205ENST00000542420 PRSS29PA6NIE9 313 aa7.24□□□□□ -1.25
SS18-205ENST00000542420 I3L3M4 83 aa7.24□□□□□ -1.25
SS18-205ENST00000542420 J3QKU1 62 aa7.24□□□□□ -1.25
SS18-205ENST00000542420 INSP01308 110 aa7.24□□□□□ -1.25
SS18-205ENST00000542420 BEAN1Q3B7T3 259 aa7.24□□□□□ -1.25
SS18-205ENST00000542420 TP53TG1Q9Y2A0 90 aa7.24□□□□□ -1.25
SS18-205ENST00000542420 CREBBPQ92793 2442 aa7.24□□□□□ -1.25
SS18-205ENST00000542420 C11orf86A6NJI1 115 aa7.24□□□□□ -1.25
SS18-205ENST00000542420 K7ERJ3 54 aa7.24□□□□□ -1.25
SS18-205ENST00000542420 NDUFA7O95182 113 aa7.24□□□□□ -1.25
SS18-205ENST00000542420 MT-ATP8P03928 68 aa7.24□□□□□ -1.25
SS18-205ENST00000542420 SMIM13P0DJ93 91 aa7.24□□□□□ -1.25
SS18-205ENST00000542420 PLA2G2AP14555 144 aa7.24□□□□□ -1.25
SS18-205ENST00000542420 MORN3Q6PF18 240 aaPredicted RBP7.24□□□□□ -1.25
SS18-205ENST00000542420 C18orf65Q6ZTR6 163 aa7.24□□□□□ -1.25
SS18-205ENST00000542420 WFDC11Q8NEX6 87 aa7.24□□□□□ -1.25
SS18-205ENST00000542420 PYGO1Q9Y3Y4 419 aa7.24□□□□□ -1.25
SS18-205ENST00000542420 A0A087WWL8 130 aa7.23□□□□□ -1.25
SS18-205ENST00000542420 KRTAP1-1Q07627 177 aa7.23□□□□□ -1.25
SS18-205ENST00000542420 NFE4Q86UQ8 179 aa7.23□□□□□ -1.25
SS18-205ENST00000542420 JPT2Q9H910 190 aa7.23□□□□□ -1.25
SS18-205ENST00000542420 AGRNO00468 2067 aa7.23□□□□□ -1.25
SS18-205ENST00000542420 MYMXA0A1B0GTQ4 84 aa7.23□□□□□ -1.25
SS18-205ENST00000542420 RBMY1BA6NDE4 496 aaKnown RBP7.23□□□□□ -1.25
SS18-205ENST00000542420 RBMY1EA6NEQ0 496 aaKnown RBP7.23□□□□□ -1.25
SS18-205ENST00000542420 KNCNA6PVL3 124 aa7.23□□□□□ -1.25
SS18-205ENST00000542420 IGKV3-20P01619 116 aa7.23□□□□□ -1.25
SS18-205ENST00000542420 RBMY1DP0C7P1 496 aaKnown RBP7.23□□□□□ -1.25
SS18-205ENST00000542420 XGP55808 180 aa7.23□□□□□ -1.25
SS18-205ENST00000542420 DEFB136Q30KP8 78 aa7.23□□□□□ -1.25
SS18-205ENST00000542420 CEND1Q8N111 149 aa7.23□□□□□ -1.25
SS18-205ENST00000542420 DOPEY2Q9Y3R5 2298 aa7.22□□□□□ -1.25
SS18-205ENST00000542420 SPRY2O43597 315 aa7.22□□□□□ -1.25
SS18-205ENST00000542420 SPINK8P0C7L1 97 aa7.22□□□□□ -1.25
SS18-205ENST00000542420 RBMY1A1P0DJD3 496 aaKnown RBP7.22□□□□□ -1.25
SS18-205ENST00000542420 RBMY1CP0DJD4 496 aa7.22□□□□□ -1.25
SS18-205ENST00000542420 RBMY1FQ15415 496 aaKnown RBP7.22□□□□□ -1.25
SS18-205ENST00000542420 C20orf203Q8NBC4 194 aa7.22□□□□□ -1.25
SS18-205ENST00000542420 DUX3Q96PT4 197 aa7.22□□□□□ -1.25
SS18-205ENST00000542420 TNFRSF18Q9Y5U5 241 aa7.22□□□□□ -1.25
SS18-205ENST00000542420 H3BMG7 143 aa7.22□□□□□ -1.25
SS18-205ENST00000542420 CCL24O00175 119 aa7.22□□□□□ -1.25
SS18-205ENST00000542420 TSHBP01222 138 aa7.22□□□□□ -1.25
SS18-205ENST00000542420 GAGE5Q13069 117 aa7.22□□□□□ -1.25
SS18-205ENST00000542420 GAGE6Q13070 117 aa7.22□□□□□ -1.25
SS18-205ENST00000542420 Q6ZUT4 128 aa7.22□□□□□ -1.25
SS18-205ENST00000542420 PTPN13Q12923 2485 aa7.22□□□□□ -1.25
SS18-205ENST00000542420 USP9YO00507 2555 aaPredicted RBP7.21□□□□□ -1.25
SS18-205ENST00000542420 IGLV4-69A0A075B6H9 119 aa7.21□□□□□ -1.26
SS18-205ENST00000542420 RS1O15537 224 aa7.21□□□□□ -1.26
SS18-205ENST00000542420 NHLRC4P0CG21 123 aaPredicted RBP7.21□□□□□ -1.26
SS18-205ENST00000542420 KHDC1LQ5JSQ8 128 aa7.21□□□□□ -1.26
SS18-205ENST00000542420 FAM74A4Q5TZK3 123 aa7.21□□□□□ -1.26
SS18-205ENST00000542420 C11orf72Q8NBR9 251 aa7.21□□□□□ -1.26
SS18-205ENST00000542420 IL17DQ8TAD2 202 aa7.21□□□□□ -1.26
SS18-205ENST00000542420 LRRK2Q5S007 2527 aa7.21□□□□□ -1.26
SS18-205ENST00000542420 NAV2Q8IVL1 2488 aa7.21□□□□□ -1.26
SS18-205ENST00000542420 NACAE9PAV3 2078 aa7.21□□□□□ -1.26
SS18-205ENST00000542420 A0A1B0GWB2 263 aa7.21□□□□□ -1.26
SS18-205ENST00000542420 IGLL5B9A064 214 aa7.21□□□□□ -1.26
SS18-205ENST00000542420 TCTAP57738 103 aa7.21□□□□□ -1.26
SS18-205ENST00000542420 TRBV7-3A0A075B6L6 115 aa7.2□□□□□ -1.26
SS18-205ENST00000542420 FOXI1Q12951 378 aa7.2□□□□□ -1.26
SS18-205ENST00000542420 ESM1Q9NQ30 184 aa7.2□□□□□ -1.26
SS18-205ENST00000542420 IGHV3-53P01767 116 aa7.19□□□□□ -1.26
SS18-205ENST00000542420 GCSHP23434 173 aa7.19□□□□□ -1.26
SS18-205ENST00000542420 HILS1P60008 231 aa7.19□□□□□ -1.26
SS18-205ENST00000542420 ODF3L2Q3SX64 289 aa7.19□□□□□ -1.26
SS18-205ENST00000542420 PRADC1Q9BSG0 188 aa7.19□□□□□ -1.26
SS18-205ENST00000542420 B5MCH6 92 aa7.19□□□□□ -1.26
SS18-205ENST00000542420 SMCPP49901 116 aaPredicted RBP7.19□□□□□ -1.26
SS18-205ENST00000542420 MAPKAPK5-AS1Q8N8E1 139 aa7.19□□□□□ -1.26
SS18-205ENST00000542420 SPANXA1Q9NS26 97 aa7.19□□□□□ -1.26
SS18-205ENST00000542420 UTP20O75691 2785 aaKnown RBP7.19□□□□□ -1.26
SS18-205ENST00000542420 FBN2P35556 2912 aa7.19□□□□□ -1.26
SS18-205ENST00000542420 COL12A1Q99715 3063 aa7.19□□□□□ -1.26
SS18-205ENST00000542420 CSMD1Q96PZ7 3565 aa7.19□□□□□ -1.26
SS18-205ENST00000542420 GAGE13Q4V321 117 aa7.18□□□□□ -1.26
SS18-205ENST00000542420 CFAP126Q5VTH2 177 aa7.18□□□□□ -1.26
SS18-205ENST00000542420 STHQ8IWL8 128 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 120.5 ms