RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 A0A0J9YY99 117 aa4.96□□□□□ -1.62
USP28-202ENST00000535607 COX6B1P14854 86 aa4.96□□□□□ -1.62
USP28-202ENST00000535607 PRTN3P24158 256 aa4.96□□□□□ -1.62
USP28-202ENST00000535607 EFNA4P52798 201 aa4.96□□□□□ -1.62
USP28-202ENST00000535607 LINC01560Q8TB33 94 aa4.96□□□□□ -1.62
USP28-202ENST00000535607 COPS9Q8WXC6 57 aa4.96□□□□□ -1.62
USP28-202ENST00000535607 LINC00477Q96M19 166 aa4.96□□□□□ -1.62
USP28-202ENST00000535607 METTL26Q96S19 204 aa4.96□□□□□ -1.62
USP28-202ENST00000535607 TIMM17AQ99595 171 aa4.96□□□□□ -1.62
USP28-202ENST00000535607 YAE1D1Q9NRH1 226 aa4.96□□□□□ -1.62
USP28-202ENST00000535607 DPM3Q9P2X0 92 aa4.96□□□□□ -1.62
USP28-202ENST00000535607 PHLDA3Q9Y5J5 127 aa4.96□□□□□ -1.62
USP28-202ENST00000535607 LRRK2Q5S007 2527 aa4.96□□□□□ -1.62
USP28-202ENST00000535607 PCNX1Q96RV3 2341 aa4.95□□□□□ -1.62
USP28-202ENST00000535607 A0A0J9YX75 114 aa4.95□□□□□ -1.62
USP28-202ENST00000535607 TRBV30A0A0K0K1B3 111 aa4.95□□□□□ -1.62
USP28-202ENST00000535607 SDHAF1A6NFY7 115 aa4.95□□□□□ -1.62
USP28-202ENST00000535607 OVOL1O14753 267 aa4.95□□□□□ -1.62
USP28-202ENST00000535607 LEPROTO15243 131 aa4.95□□□□□ -1.62
USP28-202ENST00000535607 IGHV3-30P01768 117 aa4.95□□□□□ -1.62
USP28-202ENST00000535607 IGHV3-30-5P0DP03 117 aa4.95□□□□□ -1.62
USP28-202ENST00000535607 GATA1P15976 413 aaPredicted RBP4.95□□□□□ -1.62
USP28-202ENST00000535607 CNTFRP26992 372 aa4.95□□□□□ -1.62
USP28-202ENST00000535607 HERV-K104P63124 156 aa4.95□□□□□ -1.62
USP28-202ENST00000535607 LINC01620Q4KN68 170 aa4.95□□□□□ -1.62
USP28-202ENST00000535607 MEIG1Q5JSS6 88 aa4.95□□□□□ -1.62
USP28-202ENST00000535607 RUSC1-AS1Q66K80 236 aa4.95□□□□□ -1.62
USP28-202ENST00000535607 C9orf139Q6ZV77 190 aa4.95□□□□□ -1.62
USP28-202ENST00000535607 C15orf53Q8NAA6 179 aa4.95□□□□□ -1.62
USP28-202ENST00000535607 KRTAP4-2Q9BYR5 136 aa4.95□□□□□ -1.62
USP28-202ENST00000535607 ZNF256Q9Y2P7 627 aaPredicted RBP4.95□□□□□ -1.62
USP28-202ENST00000535607 IGKV3D-20A0A0C4DH25 116 aa4.94□□□□□ -1.62
USP28-202ENST00000535607 LY6LH3BQJ8 138 aa4.94□□□□□ -1.62
USP28-202ENST00000535607 J3QQQ9 107 aa4.94□□□□□ -1.62
USP28-202ENST00000535607 LGALS9O00182 355 aa4.94□□□□□ -1.62
USP28-202ENST00000535607 IGHV3-33P01772 117 aa4.94□□□□□ -1.62
USP28-202ENST00000535607 TRGV3P03979 118 aa4.94□□□□□ -1.62
USP28-202ENST00000535607 COX7A1P24310 79 aa4.94□□□□□ -1.62
USP28-202ENST00000535607 DSCR9P59020 149 aa4.94□□□□□ -1.62
USP28-202ENST00000535607 C2orf82Q6UX34 121 aa4.94□□□□□ -1.62
USP28-202ENST00000535607 LYPD2Q6UXB3 125 aa4.94□□□□□ -1.62
USP28-202ENST00000535607 DYNAPQ8N1N2 210 aa4.94□□□□□ -1.62
USP28-202ENST00000535607 SMIM20Q8N5G0 67 aa4.94□□□□□ -1.62
USP28-202ENST00000535607 PTH2Q96A98 100 aa4.94□□□□□ -1.62
USP28-202ENST00000535607 EEF1AKMT3Q96AZ1 226 aa4.94□□□□□ -1.62
USP28-202ENST00000535607 KRTAP4-5Q9BYR2 181 aa4.94□□□□□ -1.62
USP28-202ENST00000535607 MDFICQ9P1T7 246 aa4.94□□□□□ -1.62
USP28-202ENST00000535607 TNFRSF18Q9Y5U5 241 aa4.94□□□□□ -1.62
USP28-202ENST00000535607 TENM4Q6N022 2769 aa4.94□□□□□ -1.62
USP28-202ENST00000535607 TRBV7-1A0A0A6YYK4 115 aa4.93□□□□□ -1.62
USP28-202ENST00000535607 TRAV26-2A0A0B4J265 109 aa4.93□□□□□ -1.62
USP28-202ENST00000535607 IGHV7-4-1A0A0J9YVY3 117 aa4.93□□□□□ -1.62
USP28-202ENST00000535607 E7EQL1 145 aa4.93□□□□□ -1.62
USP28-202ENST00000535607 C19orf84I3L1E1 186 aa4.93□□□□□ -1.62
USP28-202ENST00000535607 M0R1W7 72 aa4.93□□□□□ -1.62
USP28-202ENST00000535607 IGHV1-69P01742 117 aa4.93□□□□□ -1.62
USP28-202ENST00000535607 MGPP08493 103 aa4.93□□□□□ -1.62
USP28-202ENST00000535607 RHOHQ15669 191 aa4.93□□□□□ -1.62
USP28-202ENST00000535607 DUX5Q96PT3 197 aa4.93□□□□□ -1.62
USP28-202ENST00000535607 AGPAT4-IT1Q9H0P7 198 aa4.93□□□□□ -1.62
USP28-202ENST00000535607 CTSZQ9UBR2 303 aa4.93□□□□□ -1.62
USP28-202ENST00000535607 SMAD5-AS1Q9Y6J3 95 aa4.93□□□□□ -1.62
USP28-202ENST00000535607 SPTBN1Q01082 2364 aaKnown RBP4.93□□□□□ -1.62
USP28-202ENST00000535607 PLCE1Q9P212 2302 aa4.92□□□□□ -1.62
USP28-202ENST00000535607 HRNRQ86YZ3 2850 aaPredicted RBP4.92□□□□□ -1.62
USP28-202ENST00000535607 AGRNO00468 2067 aa4.92□□□□□ -1.62
USP28-202ENST00000535607 IGHV4OR15-8A0A075B7B6 117 aa4.92□□□□□ -1.62
USP28-202ENST00000535607 A0A087WW49 117 aa4.92□□□□□ -1.62
USP28-202ENST00000535607 TRAV4A0A0B4J268 109 aa4.92□□□□□ -1.62
USP28-202ENST00000535607 TRBV7-7A0A0K0K1E9 115 aa4.92□□□□□ -1.62
USP28-202ENST00000535607 BUB3O43684 328 aa4.92□□□□□ -1.62
USP28-202ENST00000535607 DUSP14O95147 198 aaKnown RBP4.92□□□□□ -1.62
USP28-202ENST00000535607 CTSGP08311 255 aa4.92□□□□□ -1.62
USP28-202ENST00000535607 MINOS1Q5TGZ0 78 aa4.92□□□□□ -1.62
USP28-202ENST00000535607 C11orf71Q6IPW1 123 aa4.92□□□□□ -1.62
USP28-202ENST00000535607 SFTA2Q6UW10 78 aa4.92□□□□□ -1.62
USP28-202ENST00000535607 FAM159AQ6UWV7 190 aa4.92□□□□□ -1.62
USP28-202ENST00000535607 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.92□□□□□ -1.62
USP28-202ENST00000535607 POM121L12Q8N7R1 296 aa4.92□□□□□ -1.62
USP28-202ENST00000535607 TMEM263Q8WUH6 116 aaKnown RBP4.92□□□□□ -1.62
USP28-202ENST00000535607 RASL10AQ92737 203 aa4.92□□□□□ -1.62
USP28-202ENST00000535607 UBTD1Q9HAC8 227 aa4.92□□□□□ -1.62
USP28-202ENST00000535607 TP53TG1Q9Y2A0 90 aa4.92□□□□□ -1.62
USP28-202ENST00000535607 MINOS1-NBL1R4GNA1 71 aa4.92□□□□□ -1.62
USP28-202ENST00000535607 DCHS2Q6V1P9 2916 aa4.92□□□□□ -1.62
USP28-202ENST00000535607 HELZ2Q9BYK8 2649 aaKnown RBP4.91□□□□□ -1.62
USP28-202ENST00000535607 IGKV2D-30A0A075B6S6 120 aa4.91□□□□□ -1.62
USP28-202ENST00000535607 A4D1N5 150 aa4.91□□□□□ -1.62
USP28-202ENST00000535607 CCDC179H3BU77 68 aa4.91□□□□□ -1.62
USP28-202ENST00000535607 UQCRQO14949 82 aa4.91□□□□□ -1.62
USP28-202ENST00000535607 GAS8-AS1O95177 125 aa4.91□□□□□ -1.62
USP28-202ENST00000535607 ZNF56Q15929 161 aa4.91□□□□□ -1.62
USP28-202ENST00000535607 KLK9Q2XQG4 91 aa4.91□□□□□ -1.62
USP28-202ENST00000535607 ZNF876PQ49A33 203 aa4.91□□□□□ -1.62
USP28-202ENST00000535607 C5orf47Q569G3 176 aa4.91□□□□□ -1.62
USP28-202ENST00000535607 DEFB121Q5J5C9 76 aa4.91□□□□□ -1.62
USP28-202ENST00000535607 LRRC75A-AS1Q8N1F1 130 aa4.91□□□□□ -1.62
USP28-202ENST00000535607 Q8N9P0 234 aaPredicted RBP4.91□□□□□ -1.62
USP28-202ENST00000535607 OR13C6PQ8NH95 151 aa4.91□□□□□ -1.62
USP28-202ENST00000535607 DNAJC30Q96LL9 226 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms