RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 CFAP126Q5VTH2 177 aa14.35□□□□□ -0.11
PCF11-203ENST00000530304 SIGMAR1Q99720 223 aa14.35□□□□□ -0.11
PCF11-203ENST00000530304 FLNCQ14315 2725 aa14.35□□□□□ -0.11
PCF11-203ENST00000530304 CFC1BP0CG36 223 aa14.34□□□□□ -0.11
PCF11-203ENST00000530304 CFC1P0CG37 223 aa14.34□□□□□ -0.11
PCF11-203ENST00000530304 HOXD3P31249 432 aaPredicted RBP14.34□□□□□ -0.11
PCF11-203ENST00000530304 AZU1P20160 251 aa14.34□□□□□ -0.11
PCF11-203ENST00000530304 TMEM223A0PJW6 202 aa14.33□□□□□ -0.11
PCF11-203ENST00000530304 SMCPP49901 116 aaPredicted RBP14.33□□□□□ -0.11
PCF11-203ENST00000530304 MAPK1IP1LQ8NDC0 245 aa14.33□□□□□ -0.11
PCF11-203ENST00000530304 TRGV11A0A075B6L2 103 aa14.33□□□□□ -0.12
PCF11-203ENST00000530304 UTP20O75691 2785 aaKnown RBP14.33□□□□□ -0.12
PCF11-203ENST00000530304 DOPEY1Q5JWR5 2465 aa14.32□□□□□ -0.12
PCF11-203ENST00000530304 DOPEY2Q9Y3R5 2298 aa14.32□□□□□ -0.12
PCF11-203ENST00000530304 TGFAP01135 160 aa14.32□□□□□ -0.12
PCF11-203ENST00000530304 RNF152Q8N8N0 203 aa14.32□□□□□ -0.12
PCF11-203ENST00000530304 RBMY1A1P0DJD3 496 aaKnown RBP14.32□□□□□ -0.12
PCF11-203ENST00000530304 RBMY1CP0DJD4 496 aa14.32□□□□□ -0.12
PCF11-203ENST00000530304 RBMY1FQ15415 496 aaKnown RBP14.32□□□□□ -0.12
PCF11-203ENST00000530304 SPATA25Q9BR10 227 aa14.32□□□□□ -0.12
PCF11-203ENST00000530304 LEPROTO15243 131 aa14.31□□□□□ -0.12
PCF11-203ENST00000530304 HTN1P15515 57 aa14.31□□□□□ -0.12
PCF11-203ENST00000530304 ELANEP08246 267 aa14.31□□□□□ -0.12
PCF11-203ENST00000530304 UBE2E2Q96LR5 201 aa14.31□□□□□ -0.12
PCF11-203ENST00000530304 VPREB3Q9UKI3 123 aa14.31□□□□□ -0.12
PCF11-203ENST00000530304 TCTEX1D4Q5JR98 221 aa14.3□□□□□ -0.12
PCF11-203ENST00000530304 VCX2Q9H322 139 aa14.3□□□□□ -0.12
PCF11-203ENST00000530304 USP9XQ93008 2570 aaPredicted RBP14.3□□□□□ -0.12
PCF11-203ENST00000530304 IGLV4-3A0A075B6K6 122 aa14.3□□□□□ -0.12
PCF11-203ENST00000530304 IGHV3-64A0A075B6Q5 118 aa14.3□□□□□ -0.12
PCF11-203ENST00000530304 RHODO00212 210 aa14.3□□□□□ -0.12
PCF11-203ENST00000530304 ZNF22P17026 224 aaPredicted RBP14.3□□□□□ -0.12
PCF11-203ENST00000530304 A0A096LNT2 108 aa14.29□□□□□ -0.12
PCF11-203ENST00000530304 IGHV3-73A0A0B4J1V6 119 aa14.29□□□□□ -0.12
PCF11-203ENST00000530304 KNCNA6PVL3 124 aa14.29□□□□□ -0.12
PCF11-203ENST00000530304 SMAGPQ0VAQ4 97 aa14.29□□□□□ -0.12
PCF11-203ENST00000530304 C10orf126Q8N4M7 172 aa14.29□□□□□ -0.12
PCF11-203ENST00000530304 A0A0J9YXV3 536 aa14.29□□□□□ -0.12
PCF11-203ENST00000530304 J3QLI3 93 aa14.29□□□□□ -0.12
PCF11-203ENST00000530304 LYRM7Q5U5X0 104 aa14.29□□□□□ -0.12
PCF11-203ENST00000530304 ZNF702PQ9H963 129 aa14.29□□□□□ -0.12
PCF11-203ENST00000530304 FOXI1Q12951 378 aa14.28□□□□□ -0.12
PCF11-203ENST00000530304 ZNF418Q8TF45 676 aaPredicted RBP14.28□□□□□ -0.12
PCF11-203ENST00000530304 C1QTNF4Q9BXJ3 329 aa14.28□□□□□ -0.12
PCF11-203ENST00000530304 PRO1854Q9UHT4 67 aa14.28□□□□□ -0.12
PCF11-203ENST00000530304 CIDEAO60543 219 aa14.28□□□□□ -0.12
PCF11-203ENST00000530304 TCL1BO95988 128 aa14.28□□□□□ -0.12
PCF11-203ENST00000530304 PROK1P58294 105 aa14.28□□□□□ -0.12
PCF11-203ENST00000530304 ATP6V0E2Q8NHE4 81 aa14.27□□□□□ -0.13
PCF11-203ENST00000530304 ZANQ9Y493 2812 aa14.27□□□□□ -0.13
PCF11-203ENST00000530304 Q6YL49 198 aa14.27□□□□□ -0.13
PCF11-203ENST00000530304 PRM2P04554 102 aa14.26□□□□□ -0.13
PCF11-203ENST00000530304 DEFB131AP59861 70 aa14.26□□□□□ -0.13
PCF11-203ENST00000530304 A4D1N5 150 aa14.26□□□□□ -0.13
PCF11-203ENST00000530304 SLURP1P55000 103 aa14.26□□□□□ -0.13
PCF11-203ENST00000530304 DEFB136Q30KP8 78 aa14.26□□□□□ -0.13
PCF11-203ENST00000530304 EDA2RQ9HAV5 297 aa14.26□□□□□ -0.13
PCF11-203ENST00000530304 TRBV20-1A0A075B6N2 111 aa14.25□□□□□ -0.13
PCF11-203ENST00000530304 SCGB1A1P11684 91 aa14.25□□□□□ -0.13
PCF11-203ENST00000530304 C18orf65Q6ZTR6 163 aa14.25□□□□□ -0.13
PCF11-203ENST00000530304 BEX4Q9NWD9 120 aaPredicted RBP14.25□□□□□ -0.13
PCF11-203ENST00000530304 FAM104AQ969W3 186 aa14.25□□□□□ -0.13
PCF11-203ENST00000530304 PTH2Q96A98 100 aa14.25□□□□□ -0.13
PCF11-203ENST00000530304 TRAV2A0A0B4J234 112 aa14.24□□□□□ -0.13
PCF11-203ENST00000530304 PYGO1Q9Y3Y4 419 aa14.24□□□□□ -0.13
PCF11-203ENST00000530304 SCGB1C2P0DMR2 95 aa14.24□□□□□ -0.13
PCF11-203ENST00000530304 USP9YO00507 2555 aaPredicted RBP14.24□□□□□ -0.13
PCF11-203ENST00000530304 H3BMM0 161 aa14.23□□□□□ -0.13
PCF11-203ENST00000530304 EIF4EBP3O60516 100 aaPredicted RBP14.23□□□□□ -0.13
PCF11-203ENST00000530304 CD28P10747 220 aa14.23□□□□□ -0.13
PCF11-203ENST00000530304 SPXQ9BT56 116 aa14.23□□□□□ -0.13
PCF11-203ENST00000530304 IGSF10Q6WRI0 2623 aa14.23□□□□□ -0.13
PCF11-203ENST00000530304 CEMP1Q6PRD7 247 aaPredicted RBP14.23□□□□□ -0.13
PCF11-203ENST00000530304 MUSTN1Q8IVN3 82 aa14.23□□□□□ -0.13
PCF11-203ENST00000530304 RAX2Q96IS3 184 aa14.23□□□□□ -0.13
PCF11-203ENST00000530304 DUX3Q96PT4 197 aa14.23□□□□□ -0.13
PCF11-203ENST00000530304 RBMY1BA6NDE4 496 aaKnown RBP14.22□□□□□ -0.13
PCF11-203ENST00000530304 RBMY1EA6NEQ0 496 aaKnown RBP14.22□□□□□ -0.13
PCF11-203ENST00000530304 RBMY1DP0C7P1 496 aaKnown RBP14.22□□□□□ -0.13
PCF11-203ENST00000530304 Q9UF83 564 aa14.22□□□□□ -0.13
PCF11-203ENST00000530304 TNFRSF18Q9Y5U5 241 aa14.22□□□□□ -0.13
PCF11-203ENST00000530304 MXRA5Q9NR99 2828 aa14.22□□□□□ -0.13
PCF11-203ENST00000530304 FSHBP01225 129 aa14.21□□□□□ -0.13
PCF11-203ENST00000530304 CREBBPQ92793 2442 aa14.21□□□□□ -0.13
PCF11-203ENST00000530304 A8MTW9 85 aa14.21□□□□□ -0.14
PCF11-203ENST00000530304 M0R2P5 195 aa14.21□□□□□ -0.14
PCF11-203ENST00000530304 IGHV3-30-3P0DP02 117 aa14.21□□□□□ -0.14
PCF11-203ENST00000530304 MRPS36P82909 103 aaKnown RBP14.21□□□□□ -0.14
PCF11-203ENST00000530304 TMEM263Q8WUH6 116 aaKnown RBP14.21□□□□□ -0.14
PCF11-203ENST00000530304 ANKRD17O75179 2603 aaKnown RBP14.21□□□□□ -0.14
PCF11-203ENST00000530304 FBN2P35556 2912 aa14.2□□□□□ -0.14
PCF11-203ENST00000530304 A8MWV9 139 aa14.2□□□□□ -0.14
PCF11-203ENST00000530304 Q5PR19 223 aa14.2□□□□□ -0.14
PCF11-203ENST00000530304 A0A0J9YXY3 114 aa14.2□□□□□ -0.14
PCF11-203ENST00000530304 IGHV3-33P01772 117 aa14.2□□□□□ -0.14
PCF11-203ENST00000530304 Q6ZSN1 163 aa14.2□□□□□ -0.14
PCF11-203ENST00000530304 PIEZO1Q92508 2521 aa14.19□□□□□ -0.14
PCF11-203ENST00000530304 RNASE13Q5GAN3 156 aaKnown RBP14.19□□□□□ -0.14
PCF11-203ENST00000530304 TEN1Q86WV5 123 aa14.19□□□□□ -0.14
PCF11-203ENST00000530304 SBSPONQ8IVN8 264 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 138.4 ms