RNA–Protein interactions for RNA: ENST00000493923.1

HDAC6-234, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 404 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-234ENST00000493923 TMEM116Q8NCL8 245 aa6.12□□□□□ -1.43
HDAC6-234ENST00000493923 SRSF12Q8WXF0 261 aaKnown RBP6.12□□□□□ -1.43
HDAC6-234ENST00000493923 FXYD5Q96DB9 178 aa6.12□□□□□ -1.43
HDAC6-234ENST00000493923 LINC01600Q96MT4 127 aa6.12□□□□□ -1.43
HDAC6-234ENST00000493923 SLC25A39Q9BZJ4 359 aaPredicted RBP6.12□□□□□ -1.43
HDAC6-234ENST00000493923 RETNQ9HD89 108 aa6.12□□□□□ -1.43
HDAC6-234ENST00000493923 A0A096LNJ9 63 aa6.11□□□□□ -1.43
HDAC6-234ENST00000493923 CGB1A6NKQ9 187 aa6.11□□□□□ -1.43
HDAC6-234ENST00000493923 TEX22C9J3V5 150 aa6.11□□□□□ -1.43
HDAC6-234ENST00000493923 CCDC179H3BU77 68 aa6.11□□□□□ -1.43
HDAC6-234ENST00000493923 H3BUA1 57 aa6.11□□□□□ -1.43
HDAC6-234ENST00000493923 NPYP01303 97 aa6.11□□□□□ -1.43
HDAC6-234ENST00000493923 IFI27P40305 119 aaPredicted RBP6.11□□□□□ -1.43
HDAC6-234ENST00000493923 ZNF138P52744 262 aa6.11□□□□□ -1.43
HDAC6-234ENST00000493923 UBE2D3P61077 147 aa6.11□□□□□ -1.43
HDAC6-234ENST00000493923 UBE2D2P62837 147 aa6.11□□□□□ -1.43
HDAC6-234ENST00000493923 RPS28P62857 69 aaKnown RBP6.11□□□□□ -1.43
HDAC6-234ENST00000493923 FAM106AQ4KMX7 169 aa6.11□□□□□ -1.43
HDAC6-234ENST00000493923 Q86TA4 180 aa6.11□□□□□ -1.43
HDAC6-234ENST00000493923 MUC7Q8TAX7 377 aa6.11□□□□□ -1.43
HDAC6-234ENST00000493923 C18orf15Q96N68 181 aa6.11□□□□□ -1.43
HDAC6-234ENST00000493923 TM2D3Q9BRN9 247 aa6.11□□□□□ -1.43
HDAC6-234ENST00000493923 WFDC10AQ9H1F0 79 aa6.11□□□□□ -1.43
HDAC6-234ENST00000493923 OTORQ9NRC9 128 aa6.11□□□□□ -1.43
HDAC6-234ENST00000493923 S4R3C0 116 aa6.11□□□□□ -1.43
HDAC6-234ENST00000493923 PGPA6NDG6 321 aa6.1□□□□□ -1.43
HDAC6-234ENST00000493923 SMIM9A6NGZ8 99 aa6.1□□□□□ -1.43
HDAC6-234ENST00000493923 C3orf84H3BNL1 204 aa6.1□□□□□ -1.43
HDAC6-234ENST00000493923 IGHV3-23P01764 117 aa6.1□□□□□ -1.43
HDAC6-234ENST00000493923 TCRAP04437 139 aa6.1□□□□□ -1.43
HDAC6-234ENST00000493923 PSMB2P49721 201 aa6.1□□□□□ -1.43
HDAC6-234ENST00000493923 ERHP84090 104 aaKnown RBP6.1□□□□□ -1.43
HDAC6-234ENST00000493923 FAM104BQ5XKR9 115 aa6.1□□□□□ -1.43
HDAC6-234ENST00000493923 MORN3Q6PF18 240 aaPredicted RBP6.1□□□□□ -1.43
HDAC6-234ENST00000493923 AMTNQ6UX39 209 aa6.1□□□□□ -1.43
HDAC6-234ENST00000493923 NFE4Q86UQ8 179 aa6.1□□□□□ -1.43
HDAC6-234ENST00000493923 THAP8Q8NA92 274 aa6.1□□□□□ -1.43
HDAC6-234ENST00000493923 GLMPQ8WWB7 406 aa6.1□□□□□ -1.43
HDAC6-234ENST00000493923 IMUPQ9GZP8 106 aa6.1□□□□□ -1.43
HDAC6-234ENST00000493923 EDA2RQ9HAV5 297 aa6.1□□□□□ -1.43
HDAC6-234ENST00000493923 TRAV3A0A0B4J244 114 aa6.09□□□□□ -1.43
HDAC6-234ENST00000493923 FAM240AA0A1B0GVK7 77 aa6.09□□□□□ -1.43
HDAC6-234ENST00000493923 ZNF785A8K8V0 405 aa6.09□□□□□ -1.43
HDAC6-234ENST00000493923 PRSS1P07477 247 aa6.09□□□□□ -1.43
HDAC6-234ENST00000493923 VMA21Q3ZAQ7 101 aa6.09□□□□□ -1.43
HDAC6-234ENST00000493923 ZC2HC1BQ5TFG8 222 aa6.09□□□□□ -1.43
HDAC6-234ENST00000493923 TMEM75Q8N9X5 138 aa6.09□□□□□ -1.43
HDAC6-234ENST00000493923 CARD19Q96LW7 228 aa6.09□□□□□ -1.43
HDAC6-234ENST00000493923 FANCD2OSQ96PS1 177 aa6.09□□□□□ -1.43
HDAC6-234ENST00000493923 HHLA3Q9XRX5 114 aa6.09□□□□□ -1.43
HDAC6-234ENST00000493923 TRAV8-2A0A0B4J237 113 aa6.08□□□□□ -1.44
HDAC6-234ENST00000493923 TRAV8-4A0A0B4J246 113 aa6.08□□□□□ -1.44
HDAC6-234ENST00000493923 A8MZ25 164 aa6.08□□□□□ -1.44
HDAC6-234ENST00000493923 D6R8Y8 96 aa6.08□□□□□ -1.44
HDAC6-234ENST00000493923 SCGB2A1O75556 95 aa6.08□□□□□ -1.44
HDAC6-234ENST00000493923 CD7P09564 240 aa6.08□□□□□ -1.44
HDAC6-234ENST00000493923 RPL13AP40429 203 aaKnown RBP6.08□□□□□ -1.44
HDAC6-234ENST00000493923 UBE2D1P51668 147 aa6.08□□□□□ -1.44
HDAC6-234ENST00000493923 XP32Q5T750 250 aa6.08□□□□□ -1.44
HDAC6-234ENST00000493923 FAM159AQ6UWV7 190 aa6.08□□□□□ -1.44
HDAC6-234ENST00000493923 USMG5Q96IX5 58 aa6.08□□□□□ -1.44
HDAC6-234ENST00000493923 CCDC140Q96MF4 163 aa6.08□□□□□ -1.44
HDAC6-234ENST00000493923 TMEM14CQ9P0S9 112 aa6.08□□□□□ -1.44
HDAC6-234ENST00000493923 DKK2Q9UBU2 259 aa6.08□□□□□ -1.44
HDAC6-234ENST00000493923 TRAV12-1A0A0B4J245 112 aa6.07□□□□□ -1.44
HDAC6-234ENST00000493923 LOC107984156A0A0G2JMH3 177 aa6.07□□□□□ -1.44
HDAC6-234ENST00000493923 RBMY1BA6NDE4 496 aaKnown RBP6.07□□□□□ -1.44
HDAC6-234ENST00000493923 RBMY1EA6NEQ0 496 aaKnown RBP6.07□□□□□ -1.44
HDAC6-234ENST00000493923 UPK2O00526 184 aa6.07□□□□□ -1.44
HDAC6-234ENST00000493923 DUSP14O95147 198 aaKnown RBP6.07□□□□□ -1.44
HDAC6-234ENST00000493923 RBMY1DP0C7P1 496 aaKnown RBP6.07□□□□□ -1.44
HDAC6-234ENST00000493923 ARMS2P0C7Q2 107 aa6.07□□□□□ -1.44
HDAC6-234ENST00000493923 CKS2P33552 79 aa6.07□□□□□ -1.44
HDAC6-234ENST00000493923 RPL27AP46776 148 aaKnown RBP6.07□□□□□ -1.44
HDAC6-234ENST00000493923 TNP2Q05952 138 aa6.07□□□□□ -1.44
HDAC6-234ENST00000493923 C15orf32Q32M92 178 aa6.07□□□□□ -1.44
HDAC6-234ENST00000493923 LINC00322Q6ZN03 302 aaPredicted RBP6.07□□□□□ -1.44
HDAC6-234ENST00000493923 ARL17AQ8IVW1 177 aa6.07□□□□□ -1.44
HDAC6-234ENST00000493923 LYPD1Q8N2G4 141 aa6.07□□□□□ -1.44
HDAC6-234ENST00000493923 ANKRD29Q8N6D5 301 aa6.07□□□□□ -1.44
HDAC6-234ENST00000493923 TMEM167AQ8TBQ9 72 aa6.07□□□□□ -1.44
HDAC6-234ENST00000493923 RASL10AQ92737 203 aa6.07□□□□□ -1.44
HDAC6-234ENST00000493923 TMEM101Q96IK0 257 aa6.07□□□□□ -1.44
HDAC6-234ENST00000493923 TRGV9Q99603 122 aa6.07□□□□□ -1.44
HDAC6-234ENST00000493923 IGKV2D-26A0A0A0MRZ7 120 aa6.06□□□□□ -1.44
HDAC6-234ENST00000493923 TRBV7-7A0A0K0K1E9 115 aa6.06□□□□□ -1.44
HDAC6-234ENST00000493923 LOC389332A0A1B0GUA5 103 aa6.06□□□□□ -1.44
HDAC6-234ENST00000493923 FAM223BA6NKX1 122 aa6.06□□□□□ -1.44
HDAC6-234ENST00000493923 PYYP10082 97 aa6.06□□□□□ -1.44
HDAC6-234ENST00000493923 RNASE2P10153 161 aaKnown RBP6.06□□□□□ -1.44
HDAC6-234ENST00000493923 GNG5P63218 68 aa6.06□□□□□ -1.44
HDAC6-234ENST00000493923 DEFB114Q30KQ6 69 aa6.06□□□□□ -1.44
HDAC6-234ENST00000493923 MRPL51Q4U2R6 128 aaKnown RBP6.06□□□□□ -1.44
HDAC6-234ENST00000493923 GTSCR1Q86UQ5 136 aa6.06□□□□□ -1.44
HDAC6-234ENST00000493923 FAM223AQ8IWN6 122 aa6.06□□□□□ -1.44
HDAC6-234ENST00000493923 Q9H3A6 140 aa6.06□□□□□ -1.44
HDAC6-234ENST00000493923 IGLV11-55A0A075B6I3 123 aa6.05□□□□□ -1.44
HDAC6-234ENST00000493923 TRAV2A0A0B4J234 112 aa6.05□□□□□ -1.44
HDAC6-234ENST00000493923 IGHV3-35A0A0C4DH35 117 aa6.05□□□□□ -1.44
HDAC6-234ENST00000493923 LCE6AA0A183 80 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms