RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 MYCBP2O75592 4640 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 A0A1W2PPB8 328 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 A0A1W2PRS3 328 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 ARL5CA6NH57 179 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 KIR3DP1A8MWS1 328 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 K7EIL1 84 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 EDF1O60869 148 aaKnown RBP0.39□□□□□ -2.35
CPSF3-205ENST00000489629 DPM2O94777 84 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 TFF1P04155 84 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 SCTP09683 121 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 CMPK1P30085 196 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 SRP9P49458 86 aaKnown RBP0.39□□□□□ -2.35
CPSF3-205ENST00000489629 GTF2A1P52655 376 aaPredicted RBP0.39□□□□□ -2.35
CPSF3-205ENST00000489629 HSD17B12Q53GQ0 312 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 TMEM91Q6ZNR0 172 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 LINC00299Q6ZSB3 139 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 KRTAP19-3Q7Z4W3 81 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 Q86TA4 180 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 PYDC1Q8WXC3 89 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 LINC00208Q96KT6 92 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 CCL19Q99731 98 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 LAMA1P25391 3075 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 FRAS1Q86XX4 4008 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 SONP18583 2426 aaKnown RBP0.39□□□□□ -2.35
CPSF3-205ENST00000489629 CFTRP13569 1480 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 PEG3Q9GZU2 1588 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 UGGT1Q9NYU2 1555 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 LOC285556D6RIA3 1793 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 PLECQ15149 4684 aaKnown RBP0.39□□□□□ -2.35
CPSF3-205ENST00000489629 DNAH7Q8WXX0 4024 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 ARHGAP31Q2M1Z3 1444 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 POLR1AO95602 1720 aaPredicted RBP0.38□□□□□ -2.35
CPSF3-205ENST00000489629 CSPG4Q6UVK1 2322 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 SRRM2Q9UQ35 2752 aaKnown RBP0.38□□□□□ -2.35
CPSF3-205ENST00000489629 USH2AO75445 5202 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 TOPAZ1Q8N9V7 1692 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 LRP1Q07954 4544 aaKnown RBP0.38□□□□□ -2.35
CPSF3-205ENST00000489629 TEX14Q8IWB6 1497 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 ARHGEF10O15013 1369 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 IGHV1-24A0A0C4DH33 117 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 NBDYA0A0U1RRE5 68 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 LOC101927531A0A1B0GV80 90 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 OR2H2O95918 312 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 IL7P13232 177 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 CKS2P33552 79 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 AKR1D1P51857 326 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 PCBD1P61457 104 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 LYPD5Q6UWN5 251 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 LINC00575Q6W349 94 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 TCTEX1D1Q8N7M0 179 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 PLAC4Q8WY50 150 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 PRO3102Q9H379 93 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 MRPL36Q9P0J6 103 aaKnown RBP0.38□□□□□ -2.35
CPSF3-205ENST00000489629 HSPB8Q9UJY1 196 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 BOKQ9UMX3 212 aaPredicted RBP0.38□□□□□ -2.35
CPSF3-205ENST00000489629 KIAA0100Q14667 2235 aaKnown RBP0.38□□□□□ -2.35
CPSF3-205ENST00000489629 SPHKAPQ2M3C7 1700 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 ABCA6Q8N139 1617 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 NRXN3Q9Y4C0 1643 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 DNAH9Q9NYC9 4486 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 EEA1Q15075 1411 aa0.38□□□□□ -2.35
CPSF3-205ENST00000489629 PKD1P98161 4303 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 HSPG2P98160 4391 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 C3P01024 1663 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 ZNF142P52746 1687 aaPredicted RBP0.37□□□□□ -2.35
CPSF3-205ENST00000489629 MLH3Q9UHC1 1453 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 CACNA1HO95180 2353 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 A0A0D9SG42 100 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 TRBV30A0A0K0K1B3 111 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 TMEM189A5PLL7 270 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 BBIP1A8MTZ0 92 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 SCGB1A1P11684 91 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 DNAJB13P59910 316 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 CKS1BP61024 79 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 PSPHP78330 225 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 HIST1H1AQ02539 215 aaPredicted RBP0.37□□□□□ -2.35
CPSF3-205ENST00000489629 ALX1Q15699 326 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 IQCJQ1A5X6 159 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 Q6ZQY7 126 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 TCTE3Q8IZS6 198 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 C10orf111Q8N326 155 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 SMIM7Q9BQ49 75 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 AIF1LQ9BQI0 150 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 BANF2Q9H503 90 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 BATF3Q9NR55 127 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 CALML5Q9NZT1 146 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 STARD9Q9P2P6 4700 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 A0A0G2JMZ2 1700 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 FMN2Q9NZ56 1722 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 ANKRD26Q9UPS8 1709 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 USP32Q8NFA0 1604 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 KIAA0586Q9BVV6 1533 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 LTN1O94822 1766 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 DLEC1Q9Y238 1755 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 CMYA5Q8N3K9 4069 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 ESPL1Q14674 2120 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 LRP2P98164 4655 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 NBASA2RRP1 2371 aa0.37□□□□□ -2.35
CPSF3-205ENST00000489629 ADAMTS12P58397 1594 aa0.36□□□□□ -2.35
CPSF3-205ENST00000489629 ABCA4P78363 2273 aa0.36□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 260.3 ms