RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 P0DMU3 169 aa13.43□□□□□ -0.26
NPHP4-209ENST00000489180 FAM231AP0DMU4 169 aa13.43□□□□□ -0.26
NPHP4-209ENST00000489180 FAM231CP0DMU5 169 aa13.43□□□□□ -0.26
NPHP4-209ENST00000489180 PSMB8P28062 276 aa13.43□□□□□ -0.26
NPHP4-209ENST00000489180 C1orf229Q6ZS94 237 aaPredicted RBP13.43□□□□□ -0.26
NPHP4-209ENST00000489180 ZNF295-AS1Q8N0V1 137 aa13.43□□□□□ -0.26
NPHP4-209ENST00000489180 NACAE9PAV3 2078 aa13.43□□□□□ -0.26
NPHP4-209ENST00000489180 K7EMT4 169 aa13.43□□□□□ -0.26
NPHP4-209ENST00000489180 MED14OSP0DP75 135 aa13.43□□□□□ -0.26
NPHP4-209ENST00000489180 TIRAPP58753 221 aa13.43□□□□□ -0.26
NPHP4-209ENST00000489180 SIRPDQ9H106 197 aa13.43□□□□□ -0.26
NPHP4-209ENST00000489180 TNRC6BQ9UPQ9 1833 aaKnown RBP13.43□□□□□ -0.26
NPHP4-209ENST00000489180 IGHV1-58A0A0C4DH39 117 aa13.42□□□□□ -0.26
NPHP4-209ENST00000489180 LINC01548A6NM66 108 aa13.42□□□□□ -0.26
NPHP4-209ENST00000489180 NDUFA11Q86Y39 141 aa13.42□□□□□ -0.26
NPHP4-209ENST00000489180 GPHB5Q86YW7 130 aa13.42□□□□□ -0.26
NPHP4-209ENST00000489180 C20orf203Q8NBC4 194 aa13.41□□□□□ -0.26
NPHP4-209ENST00000489180 ATOX1O00244 68 aa13.41□□□□□ -0.26
NPHP4-209ENST00000489180 TCL1BO95988 128 aa13.41□□□□□ -0.26
NPHP4-209ENST00000489180 CCDC140Q96MF4 163 aa13.41□□□□□ -0.26
NPHP4-209ENST00000489180 NREPQ16612 68 aa13.4□□□□□ -0.26
NPHP4-209ENST00000489180 DEFB135Q30KP9 77 aa13.4□□□□□ -0.26
NPHP4-209ENST00000489180 Q6ZUT4 128 aa13.4□□□□□ -0.26
NPHP4-209ENST00000489180 WFDC11Q8NEX6 87 aa13.4□□□□□ -0.26
NPHP4-209ENST00000489180 SPRY4Q9C004 299 aa13.4□□□□□ -0.26
NPHP4-209ENST00000489180 A0A0J9YX75 114 aa13.39□□□□□ -0.27
NPHP4-209ENST00000489180 CRIP3Q6Q6R5 217 aa13.39□□□□□ -0.27
NPHP4-209ENST00000489180 WFDC9Q8NEX5 89 aa13.39□□□□□ -0.27
NPHP4-209ENST00000489180 NDUFA1O15239 70 aa13.38□□□□□ -0.27
NPHP4-209ENST00000489180 CRYGBP07316 175 aa13.38□□□□□ -0.27
NPHP4-209ENST00000489180 DENND4AQ7Z401 1863 aa13.38□□□□□ -0.27
NPHP4-209ENST00000489180 F8W735 103 aaPredicted RBP13.38□□□□□ -0.27
NPHP4-209ENST00000489180 CLPSL1A2RUU4 121 aa13.37□□□□□ -0.27
NPHP4-209ENST00000489180 KLK12Q9UKR0 248 aa13.37□□□□□ -0.27
NPHP4-209ENST00000489180 IGF2-ASQ6U949 168 aa13.37□□□□□ -0.27
NPHP4-209ENST00000489180 PLCE1Q9P212 2302 aa13.37□□□□□ -0.27
NPHP4-209ENST00000489180 SPAG11BQ08648 103 aa13.37□□□□□ -0.27
NPHP4-209ENST00000489180 C14orf132Q9NPU4 83 aa13.37□□□□□ -0.27
NPHP4-209ENST00000489180 C4orf3Q8WVX3 66 aa13.37□□□□□ -0.27
NPHP4-209ENST00000489180 IGF1P05019 195 aa13.35□□□□□ -0.27
NPHP4-209ENST00000489180 CCL18P55774 89 aa13.35□□□□□ -0.27
NPHP4-209ENST00000489180 H3BT86 120 aa13.35□□□□□ -0.27
NPHP4-209ENST00000489180 SPANXCQ9NY87 97 aa13.35□□□□□ -0.27
NPHP4-209ENST00000489180 TRAV26-1A0A087WT03 109 aa13.35□□□□□ -0.27
NPHP4-209ENST00000489180 IGKV2D-26A0A0A0MRZ7 120 aa13.35□□□□□ -0.27
NPHP4-209ENST00000489180 A6NDX4 124 aa13.34□□□□□ -0.27
NPHP4-209ENST00000489180 A0A0J9YXY3 114 aa13.34□□□□□ -0.27
NPHP4-209ENST00000489180 MAP6D1Q9H9H5 199 aa13.34□□□□□ -0.27
NPHP4-209ENST00000489180 MIAQ16674 131 aa13.34□□□□□ -0.27
NPHP4-209ENST00000489180 JMJD7-PLA2G4BH0Y9G9 81 aa13.33□□□□□ -0.28
NPHP4-209ENST00000489180 PCNX2A6NKB5 2137 aa13.33□□□□□ -0.28
NPHP4-209ENST00000489180 DIRC1Q969H9 104 aa13.33□□□□□ -0.28
NPHP4-209ENST00000489180 IGLC6P0CF74 106 aa13.32□□□□□ -0.28
NPHP4-209ENST00000489180 C20orf173Q96LM9 149 aa13.32□□□□□ -0.28
NPHP4-209ENST00000489180 MLST8Q9BVC4 326 aa13.32□□□□□ -0.28
NPHP4-209ENST00000489180 FREM1Q5H8C1 2179 aa13.32□□□□□ -0.28
NPHP4-209ENST00000489180 TMEM263Q8WUH6 116 aaKnown RBP13.32□□□□□ -0.28
NPHP4-209ENST00000489180 ADAMTS9Q9P2N4 1935 aa13.32□□□□□ -0.28
NPHP4-209ENST00000489180 Q8NA96 180 aa13.32□□□□□ -0.28
NPHP4-209ENST00000489180 SPATA25Q9BR10 227 aa13.31□□□□□ -0.28
NPHP4-209ENST00000489180 C22orf34Q6ZV56 151 aa13.31□□□□□ -0.28
NPHP4-209ENST00000489180 ZNF106Q9H2Y7 1883 aaKnown RBP13.31□□□□□ -0.28
NPHP4-209ENST00000489180 DAZAP2Q15038 168 aaPredicted RBP13.31□□□□□ -0.28
NPHP4-209ENST00000489180 ODF3BA8MYP8 253 aa13.31□□□□□ -0.28
NPHP4-209ENST00000489180 J3KT08 172 aa13.31□□□□□ -0.28
NPHP4-209ENST00000489180 MP68P56378 58 aa13.3□□□□□ -0.28
NPHP4-209ENST00000489180 Q6ZTI0 123 aa13.3□□□□□ -0.28
NPHP4-209ENST00000489180 MBD6Q96DN6 1003 aa13.3□□□□□ -0.28
NPHP4-209ENST00000489180 TEX49A0A1B0GTD5 131 aa13.3□□□□□ -0.28
NPHP4-209ENST00000489180 EIF4EBP1Q13541 118 aaPredicted RBP13.3□□□□□ -0.28
NPHP4-209ENST00000489180 ZFHX2Q9C0A1 2572 aaPredicted RBP13.3□□□□□ -0.28
NPHP4-209ENST00000489180 CHKB-CPT1BH3BT56 60 aa13.29□□□□□ -0.28
NPHP4-209ENST00000489180 MT-ATP8P03928 68 aa13.29□□□□□ -0.28
NPHP4-209ENST00000489180 CXCL5P42830 114 aa13.29□□□□□ -0.28
NPHP4-209ENST00000489180 UBE2AP49459 152 aa13.29□□□□□ -0.28
NPHP4-209ENST00000489180 NEXN-AS1Q8NBZ9 246 aa13.29□□□□□ -0.28
NPHP4-209ENST00000489180 TMEM256-PLSCR3K7ERE1 68 aa13.29□□□□□ -0.28
NPHP4-209ENST00000489180 HIGD2BQ4VC39 106 aa13.28□□□□□ -0.28
NPHP4-209ENST00000489180 C2orf16Q68DN1 1984 aa13.28□□□□□ -0.28
NPHP4-209ENST00000489180 TMEM89A2RUT3 159 aa13.28□□□□□ -0.28
NPHP4-209ENST00000489180 NDUFB1O75438 58 aa13.28□□□□□ -0.28
NPHP4-209ENST00000489180 MAPKAPK5-AS1Q8N8E1 139 aa13.28□□□□□ -0.28
NPHP4-209ENST00000489180 RNF183Q96D59 192 aa13.28□□□□□ -0.28
NPHP4-209ENST00000489180 LINC00467Q9BRT7 94 aa13.28□□□□□ -0.28
NPHP4-209ENST00000489180 KIAA1549LQ6ZVL6 1849 aa13.28□□□□□ -0.28
NPHP4-209ENST00000489180 CRIP1P50238 77 aa13.28□□□□□ -0.28
NPHP4-209ENST00000489180 MYCNOSP40205 109 aa13.27□□□□□ -0.28
NPHP4-209ENST00000489180 LINC00574Q9H8X3 128 aa13.27□□□□□ -0.28
NPHP4-209ENST00000489180 DSCAML1Q8TD84 2053 aa13.27□□□□□ -0.28
NPHP4-209ENST00000489180 TRAV23DV6A0A075B6W5 121 aa13.27□□□□□ -0.29
NPHP4-209ENST00000489180 YPEL4Q96NS1 127 aa13.26□□□□□ -0.29
NPHP4-209ENST00000489180 PRO0255Q9UI72 69 aa13.26□□□□□ -0.29
NPHP4-209ENST00000489180 ZFAND2AQ8N6M9 145 aa13.25□□□□□ -0.29
NPHP4-209ENST00000489180 NCOA6Q14686 2063 aaPredicted RBP13.25□□□□□ -0.29
NPHP4-209ENST00000489180 LINC00269Q8N2A0 174 aa13.25□□□□□ -0.29
NPHP4-209ENST00000489180 LMO4P61968 165 aa13.25□□□□□ -0.29
NPHP4-209ENST00000489180 CDKN2A-AS1Q9UH64 79 aa13.25□□□□□ -0.29
NPHP4-209ENST00000489180 H3BQ85 93 aa13.24□□□□□ -0.29
NPHP4-209ENST00000489180 COX7BP24311 80 aa13.24□□□□□ -0.29
NPHP4-209ENST00000489180 DNAJC9-AS1A6NH13 148 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms