RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 KANTRA0A1W2PQU2 76 aa4.59□□□□□ -1.67
CCDC88A-213ENST00000476903 HMSDA8MTL9 139 aa4.59□□□□□ -1.67
CCDC88A-213ENST00000476903 UMAD1C9J7I0 102 aa4.59□□□□□ -1.67
CCDC88A-213ENST00000476903 F8W036 122 aa4.59□□□□□ -1.67
CCDC88A-213ENST00000476903 PAGE4O60829 102 aa4.59□□□□□ -1.67
CCDC88A-213ENST00000476903 LTAP01374 205 aa4.59□□□□□ -1.67
CCDC88A-213ENST00000476903 CRYGDP07320 174 aa4.59□□□□□ -1.67
CCDC88A-213ENST00000476903 SEC11BP0C7V7 166 aa4.59□□□□□ -1.67
CCDC88A-213ENST00000476903 KRTAP5-9P26371 169 aa4.59□□□□□ -1.67
CCDC88A-213ENST00000476903 G0S2P27469 103 aa4.59□□□□□ -1.67
CCDC88A-213ENST00000476903 AKR1C3P42330 323 aa4.59□□□□□ -1.67
CCDC88A-213ENST00000476903 LGALSLQ3ZCW2 172 aaPredicted RBP4.59□□□□□ -1.67
CCDC88A-213ENST00000476903 LINC01556Q5JQF7 62 aa4.59□□□□□ -1.67
CCDC88A-213ENST00000476903 DNLZQ5SXM8 178 aa4.59□□□□□ -1.67
CCDC88A-213ENST00000476903 ZFP2Q6ZN57 461 aa4.59□□□□□ -1.67
CCDC88A-213ENST00000476903 COX8CQ7Z4L0 72 aa4.59□□□□□ -1.67
CCDC88A-213ENST00000476903 FAM213BQ8TBF2 198 aa4.59□□□□□ -1.67
CCDC88A-213ENST00000476903 ZC2HC1AQ96GY0 325 aa4.59□□□□□ -1.67
CCDC88A-213ENST00000476903 PARLQ9H300 379 aa4.59□□□□□ -1.67
CCDC88A-213ENST00000476903 KRBOX1C9JBD0 128 aa4.58□□□□□ -1.68
CCDC88A-213ENST00000476903 H3BVH4 76 aa4.58□□□□□ -1.68
CCDC88A-213ENST00000476903 M0R036 132 aa4.58□□□□□ -1.68
CCDC88A-213ENST00000476903 RHODO00212 210 aa4.58□□□□□ -1.68
CCDC88A-213ENST00000476903 BCL2L11O43521 198 aa4.58□□□□□ -1.68
CCDC88A-213ENST00000476903 SH2D1AO60880 128 aa4.58□□□□□ -1.68
CCDC88A-213ENST00000476903 CAMPP49913 170 aa4.58□□□□□ -1.68
CCDC88A-213ENST00000476903 CRIP1P50238 77 aa4.58□□□□□ -1.68
CCDC88A-213ENST00000476903 EIF5AP63241 154 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-213ENST00000476903 OR10J3Q5JRS4 329 aa4.58□□□□□ -1.68
CCDC88A-213ENST00000476903 LELP1Q5T871 98 aa4.58□□□□□ -1.68
CCDC88A-213ENST00000476903 MAPKAPK5-AS1Q8N8E1 139 aa4.58□□□□□ -1.68
CCDC88A-213ENST00000476903 OR11H4Q8NGC9 324 aa4.58□□□□□ -1.68
CCDC88A-213ENST00000476903 ATP6V0E2Q8NHE4 81 aa4.58□□□□□ -1.68
CCDC88A-213ENST00000476903 OCC1Q8TAD7 63 aa4.58□□□□□ -1.68
CCDC88A-213ENST00000476903 SFT2D1Q8WV19 159 aa4.58□□□□□ -1.68
CCDC88A-213ENST00000476903 MBD3L1Q8WWY6 194 aa4.58□□□□□ -1.68
CCDC88A-213ENST00000476903 ZNF471Q9BX82 626 aaPredicted RBP4.58□□□□□ -1.68
CCDC88A-213ENST00000476903 GTSF1LQ9H1H1 148 aa4.58□□□□□ -1.68
CCDC88A-213ENST00000476903 HSPG2P98160 4391 aa4.58□□□□□ -1.68
CCDC88A-213ENST00000476903 A0A087WTM6 91 aa4.57□□□□□ -1.68
CCDC88A-213ENST00000476903 TMEM238C9JI98 176 aa4.57□□□□□ -1.68
CCDC88A-213ENST00000476903 PSCAO43653 123 aa4.57□□□□□ -1.68
CCDC88A-213ENST00000476903 ARMS2P0C7Q2 107 aa4.57□□□□□ -1.68
CCDC88A-213ENST00000476903 TPT1P13693 172 aaKnown RBP4.57□□□□□ -1.68
CCDC88A-213ENST00000476903 UFSP1Q6NVU6 142 aa4.57□□□□□ -1.68
CCDC88A-213ENST00000476903 PHLDA3Q9Y5J5 127 aa4.57□□□□□ -1.68
CCDC88A-213ENST00000476903 ABCA13Q86UQ4 5058 aa4.57□□□□□ -1.68
CCDC88A-213ENST00000476903 LRP1BQ9NZR2 4599 aa4.56□□□□□ -1.68
CCDC88A-213ENST00000476903 IGKV2D-30A0A075B6S6 120 aa4.56□□□□□ -1.68
CCDC88A-213ENST00000476903 A0A1B0GV50 99 aa4.56□□□□□ -1.68
CCDC88A-213ENST00000476903 GRIFINA4D1Z8 144 aa4.56□□□□□ -1.68
CCDC88A-213ENST00000476903 GAGE12JA6NER3 117 aa4.56□□□□□ -1.68
CCDC88A-213ENST00000476903 IBA57-AS1B1ANH7 110 aa4.56□□□□□ -1.68
CCDC88A-213ENST00000476903 IGHV3-30P01768 117 aa4.56□□□□□ -1.68
CCDC88A-213ENST00000476903 IGHV3-33P01772 117 aa4.56□□□□□ -1.68
CCDC88A-213ENST00000476903 LINC00694P0DN24 101 aa4.56□□□□□ -1.68
CCDC88A-213ENST00000476903 IGHV3-30-3P0DP02 117 aa4.56□□□□□ -1.68
CCDC88A-213ENST00000476903 IGHV3-30-5P0DP03 117 aa4.56□□□□□ -1.68
CCDC88A-213ENST00000476903 S100PP25815 95 aa4.56□□□□□ -1.68
CCDC88A-213ENST00000476903 GAGE1Q13065 139 aa4.56□□□□□ -1.68
CCDC88A-213ENST00000476903 GAGE4Q13068 117 aa4.56□□□□□ -1.68
CCDC88A-213ENST00000476903 GAGE5Q13069 117 aa4.56□□□□□ -1.68
CCDC88A-213ENST00000476903 FAM74A4Q5TZK3 123 aa4.56□□□□□ -1.68
CCDC88A-213ENST00000476903 ZFP82Q8N141 532 aa4.56□□□□□ -1.68
CCDC88A-213ENST00000476903 SFRP2Q96HF1 295 aa4.56□□□□□ -1.68
CCDC88A-213ENST00000476903 SAMD10Q9BYL1 202 aa4.56□□□□□ -1.68
CCDC88A-213ENST00000476903 JPT2Q9H910 190 aa4.56□□□□□ -1.68
CCDC88A-213ENST00000476903 SCRT2Q9NQ03 307 aa4.56□□□□□ -1.68
CCDC88A-213ENST00000476903 A0A087WWC5 75 aa4.55□□□□□ -1.68
CCDC88A-213ENST00000476903 TMSB15BA0A087X1C1 80 aa4.55□□□□□ -1.68
CCDC88A-213ENST00000476903 M0R381 172 aa4.55□□□□□ -1.68
CCDC88A-213ENST00000476903 CXCL1P09341 107 aa4.55□□□□□ -1.68
CCDC88A-213ENST00000476903 FUSP35637 526 aaKnown RBP eCLIP4.55□□□□□ -1.68
CCDC88A-213ENST00000476903 RAB5CP51148 216 aa4.55□□□□□ -1.68
CCDC88A-213ENST00000476903 LAGE3Q14657 143 aa4.55□□□□□ -1.68
CCDC88A-213ENST00000476903 C5orf47Q569G3 176 aa4.55□□□□□ -1.68
CCDC88A-213ENST00000476903 EIF5AL1Q6IS14 154 aaKnown RBP4.55□□□□□ -1.68
CCDC88A-213ENST00000476903 TMUB2Q71RG4 321 aa4.55□□□□□ -1.68
CCDC88A-213ENST00000476903 BAGE2Q86Y30 109 aa4.55□□□□□ -1.68
CCDC88A-213ENST00000476903 MTURNQ8N3F0 131 aa4.55□□□□□ -1.68
CCDC88A-213ENST00000476903 C14orf178Q8N769 122 aaPredicted RBP4.55□□□□□ -1.68
CCDC88A-213ENST00000476903 Q9HAA7 133 aa4.55□□□□□ -1.68
CCDC88A-213ENST00000476903 MANBALQ9NQG1 85 aa4.55□□□□□ -1.68
CCDC88A-213ENST00000476903 TRBV10-1A0A0K0K1A3 114 aa4.54□□□□□ -1.68
CCDC88A-213ENST00000476903 LRCOL1A6NCL2 159 aa4.54□□□□□ -1.68
CCDC88A-213ENST00000476903 TEX46H3BTG2 121 aa4.54□□□□□ -1.68
CCDC88A-213ENST00000476903 TM2D2Q9BX73 214 aa4.54□□□□□ -1.68
CCDC88A-213ENST00000476903 GNG13Q9P2W3 67 aa4.54□□□□□ -1.68
CCDC88A-213ENST00000476903 URGCP-MRPS24S4R325 110 aa4.54□□□□□ -1.68
CCDC88A-213ENST00000476903 APOBP04114 4563 aaKnown RBP4.54□□□□□ -1.68
CCDC88A-213ENST00000476903 TRAV8-3A0A0A6YYJ7 113 aa4.53□□□□□ -1.68
CCDC88A-213ENST00000476903 TRAV1-1A0A0B4J248 108 aa4.53□□□□□ -1.68
CCDC88A-213ENST00000476903 A0A1B0GV72 72 aa4.53□□□□□ -1.68
CCDC88A-213ENST00000476903 SMIM6P0DI80 62 aa4.53□□□□□ -1.68
CCDC88A-213ENST00000476903 RPL35P42766 123 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-213ENST00000476903 RPL36AP83881 106 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-213ENST00000476903 RPL19P84098 196 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-213ENST00000476903 SPANXN1Q5VSR9 72 aa4.53□□□□□ -1.68
CCDC88A-213ENST00000476903 PRR27Q6MZM9 219 aa4.53□□□□□ -1.68
CCDC88A-213ENST00000476903 TCTE3Q8IZS6 198 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms