RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 CSTL1Q9H114 145 aa3.36□□□□□ -1.87
PTPN4-206ENST00000441089 MDFICQ9P1T7 246 aa3.36□□□□□ -1.87
PTPN4-206ENST00000441089 TRBV24-1A0A075B6N3 115 aa3.35□□□□□ -1.87
PTPN4-206ENST00000441089 IGHV3OR16-12A0A075B7B8 117 aa3.35□□□□□ -1.87
PTPN4-206ENST00000441089 TRAV10A0A0B4J240 114 aa3.35□□□□□ -1.87
PTPN4-206ENST00000441089 FAM231BA6NCW3 169 aa3.35□□□□□ -1.87
PTPN4-206ENST00000441089 CBY3A6NI87 242 aa3.35□□□□□ -1.87
PTPN4-206ENST00000441089 A8MWL6 223 aa3.35□□□□□ -1.87
PTPN4-206ENST00000441089 H3BVH4 76 aa3.35□□□□□ -1.87
PTPN4-206ENST00000441089 OR5AL1P0C617 328 aa3.35□□□□□ -1.87
PTPN4-206ENST00000441089 KRTAP5-9P26371 169 aa3.35□□□□□ -1.87
PTPN4-206ENST00000441089 ASIPP42127 132 aa3.35□□□□□ -1.87
PTPN4-206ENST00000441089 NUTF2P61970 127 aaKnown RBP3.35□□□□□ -1.87
PTPN4-206ENST00000441089 TWIST1Q15672 202 aa3.35□□□□□ -1.87
PTPN4-206ENST00000441089 MRPL54Q6P161 138 aaKnown RBP3.35□□□□□ -1.87
PTPN4-206ENST00000441089 FAM159AQ6UWV7 190 aa3.35□□□□□ -1.87
PTPN4-206ENST00000441089 SPATA12Q7Z6I5 190 aa3.35□□□□□ -1.87
PTPN4-206ENST00000441089 UBE2DNLQ8IWF7 75 aa3.35□□□□□ -1.87
PTPN4-206ENST00000441089 FER1L6-AS1Q8NA97 138 aa3.35□□□□□ -1.87
PTPN4-206ENST00000441089 OR10AG1Q8NH19 301 aa3.35□□□□□ -1.87
PTPN4-206ENST00000441089 LINC01587Q99440 93 aa3.35□□□□□ -1.87
PTPN4-206ENST00000441089 C20orf144Q9BQM9 153 aa3.35□□□□□ -1.87
PTPN4-206ENST00000441089 CNFNQ9BYD5 112 aa3.35□□□□□ -1.87
PTPN4-206ENST00000441089 MSRB1Q9NZV6 116 aa3.35□□□□□ -1.87
PTPN4-206ENST00000441089 NAT8BQ9UHF3 227 aa3.35□□□□□ -1.87
PTPN4-206ENST00000441089 TIMM8BQ9Y5J9 83 aaPredicted RBP3.35□□□□□ -1.87
PTPN4-206ENST00000441089 LRP2P98164 4655 aa3.34□□□□□ -1.87
PTPN4-206ENST00000441089 PHOX2AO14813 284 aa3.34□□□□□ -1.87
PTPN4-206ENST00000441089 NXPH4O95158 308 aa3.34□□□□□ -1.87
PTPN4-206ENST00000441089 HTN1P15515 57 aa3.34□□□□□ -1.87
PTPN4-206ENST00000441089 S100PP25815 95 aa3.34□□□□□ -1.87
PTPN4-206ENST00000441089 TIRAPP58753 221 aa3.34□□□□□ -1.87
PTPN4-206ENST00000441089 SSTP61278 116 aa3.34□□□□□ -1.87
PTPN4-206ENST00000441089 KCNIP4Q6PIL6 250 aa3.34□□□□□ -1.87
PTPN4-206ENST00000441089 TMEM136Q6ZRR5 245 aa3.34□□□□□ -1.87
PTPN4-206ENST00000441089 TMEM256Q8N2U0 113 aa3.34□□□□□ -1.87
PTPN4-206ENST00000441089 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.34□□□□□ -1.87
PTPN4-206ENST00000441089 GATD1Q8NB37 220 aa3.34□□□□□ -1.87
PTPN4-206ENST00000441089 RNASE8Q8TDE3 154 aaKnown RBP3.34□□□□□ -1.87
PTPN4-206ENST00000441089 BTF3L4Q96K17 158 aa3.34□□□□□ -1.87
PTPN4-206ENST00000441089 FAM210BQ96KR6 192 aa3.34□□□□□ -1.87
PTPN4-206ENST00000441089 NDUFAF3Q9BU61 184 aa3.34□□□□□ -1.87
PTPN4-206ENST00000441089 TPPP3Q9BW30 176 aa3.34□□□□□ -1.87
PTPN4-206ENST00000441089 C1QTNF4Q9BXJ3 329 aa3.34□□□□□ -1.87
PTPN4-206ENST00000441089 GSN-AS1Q9NRJ2 163 aa3.34□□□□□ -1.87
PTPN4-206ENST00000441089 GOLT1BQ9Y3E0 138 aa3.34□□□□□ -1.87
PTPN4-206ENST00000441089 TRAV9-1A0A075B6T8 112 aa3.33□□□□□ -1.88
PTPN4-206ENST00000441089 A0A1B0GUT8 65 aa3.33□□□□□ -1.88
PTPN4-206ENST00000441089 XKRY2A2RUG3 117 aa3.33□□□□□ -1.88
PTPN4-206ENST00000441089 M0R381 172 aa3.33□□□□□ -1.88
PTPN4-206ENST00000441089 RAB5AP20339 215 aa3.33□□□□□ -1.88
PTPN4-206ENST00000441089 NTF3P20783 257 aa3.33□□□□□ -1.88
PTPN4-206ENST00000441089 S100A4P26447 101 aaKnown RBP3.33□□□□□ -1.88
PTPN4-206ENST00000441089 HBBP68871 147 aa3.33□□□□□ -1.88
PTPN4-206ENST00000441089 ZNF415Q09FC8 603 aa3.33□□□□□ -1.88
PTPN4-206ENST00000441089 C10orf25Q5T742 122 aa3.33□□□□□ -1.88
PTPN4-206ENST00000441089 WDR73Q6P4I2 378 aa3.33□□□□□ -1.88
PTPN4-206ENST00000441089 RNF185Q96GF1 192 aa3.33□□□□□ -1.88
PTPN4-206ENST00000441089 KCNS1Q96KK3 526 aa3.33□□□□□ -1.88
PTPN4-206ENST00000441089 TMEM208Q9BTX3 173 aa3.33□□□□□ -1.88
PTPN4-206ENST00000441089 JPT2Q9H910 190 aa3.33□□□□□ -1.88
PTPN4-206ENST00000441089 MRPL16Q9NX20 251 aaKnown RBP3.33□□□□□ -1.88
PTPN4-206ENST00000441089 KIF25-AS1Q9Y6Z4 181 aa3.33□□□□□ -1.88
PTPN4-206ENST00000441089 IGHV4-28A0A0C4DH34 117 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 SNURFLB1AK76 121 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 F2Z2F3 143 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 DEFB4AO15263 64 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 GAS8-AS1O95177 125 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 TRGC2P03986 189 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 EVI2AP22794 236 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 RPS10P46783 165 aaKnown RBP3.32□□□□□ -1.88
PTPN4-206ENST00000441089 CAMPP49913 170 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 LINC00315P59091 139 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 CACNG7P62955 275 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 SLAQ13239 276 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 RIGQ13278 110 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 RRN3P1Q2M238 152 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 KIAA1644Q3SXP7 199 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 SPANXN1Q5VSR9 72 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 UFSP1Q6NVU6 142 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 ZNF493Q6ZR52 646 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 ATP5L2Q7Z4Y8 100 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 AMN1Q8IY45 258 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 ZFP82Q8N141 532 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 C6orf223Q8N319 242 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 Q8NAQ8 132 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 OR11H2Q8NH07 326 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 TMEM263Q8WUH6 116 aaKnown RBP3.32□□□□□ -1.88
PTPN4-206ENST00000441089 PTH2Q96A98 100 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 C16orf74Q96GX8 76 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 SAMD10Q9BYL1 202 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 PHLDA3Q9Y5J5 127 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 PKHD1L1Q86WI1 4243 aa3.32□□□□□ -1.88
PTPN4-206ENST00000441089 SMIM9A6NGZ8 99 aa3.31□□□□□ -1.88
PTPN4-206ENST00000441089 M0R2P5 195 aa3.31□□□□□ -1.88
PTPN4-206ENST00000441089 CRYGDP07320 174 aa3.31□□□□□ -1.88
PTPN4-206ENST00000441089 RAB4AP20338 218 aa3.31□□□□□ -1.88
PTPN4-206ENST00000441089 XGP55808 180 aa3.31□□□□□ -1.88
PTPN4-206ENST00000441089 FABP9Q0Z7S8 132 aa3.31□□□□□ -1.88
PTPN4-206ENST00000441089 DAZ2Q13117 558 aaKnown RBP3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms