RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 SMIM17P0DL12 118 aa9.73□□□□□ -0.85
LIMS1-204ENST00000409441 SUMO2P61956 95 aaKnown RBP9.73□□□□□ -0.85
LIMS1-204ENST00000409441 RPL32P62910 135 aaKnown RBP9.73□□□□□ -0.85
LIMS1-204ENST00000409441 ORMDL2Q53FV1 153 aa9.73□□□□□ -0.85
LIMS1-204ENST00000409441 COL5A1-AS1Q5SY13 56 aa9.73□□□□□ -0.85
LIMS1-204ENST00000409441 SYT8Q8NBV8 401 aa9.73□□□□□ -0.85
LIMS1-204ENST00000409441 RASL10AQ92737 203 aa9.73□□□□□ -0.85
LIMS1-204ENST00000409441 KIF25-AS1Q9Y6Z4 181 aa9.73□□□□□ -0.85
LIMS1-204ENST00000409441 MUC4Q99102 2169 aa9.73□□□□□ -0.85
LIMS1-204ENST00000409441 MGPP08493 103 aa9.72□□□□□ -0.85
LIMS1-204ENST00000409441 CSNK1G2-AS1Q8NCQ2 148 aa9.72□□□□□ -0.85
LIMS1-204ENST00000409441 FBN3Q75N90 2809 aa9.72□□□□□ -0.85
LIMS1-204ENST00000409441 TRGV11A0A075B6L2 103 aa9.71□□□□□ -0.85
LIMS1-204ENST00000409441 COX8AP10176 69 aa9.71□□□□□ -0.85
LIMS1-204ENST00000409441 B9D2Q9BPU9 175 aa9.71□□□□□ -0.85
LIMS1-204ENST00000409441 LINC00315P59091 139 aa9.71□□□□□ -0.86
LIMS1-204ENST00000409441 DEFB135Q30KP9 77 aa9.71□□□□□ -0.86
LIMS1-204ENST00000409441 C18orf15Q96N68 181 aa9.71□□□□□ -0.86
LIMS1-204ENST00000409441 ZMAT4Q9H898 229 aa9.71□□□□□ -0.86
LIMS1-204ENST00000409441 NBEAL2Q6ZNJ1 2754 aa9.7□□□□□ -0.86
LIMS1-204ENST00000409441 SPRY2O43597 315 aa9.7□□□□□ -0.86
LIMS1-204ENST00000409441 ODF1Q14990 250 aa9.7□□□□□ -0.86
LIMS1-204ENST00000409441 BATFQ16520 125 aa9.7□□□□□ -0.86
LIMS1-204ENST00000409441 TCAPO15273 167 aa9.69□□□□□ -0.86
LIMS1-204ENST00000409441 NUDT3O95989 172 aa9.69□□□□□ -0.86
LIMS1-204ENST00000409441 INSP01308 110 aa9.69□□□□□ -0.86
LIMS1-204ENST00000409441 C1orf158Q8N1D5 194 aa9.69□□□□□ -0.86
LIMS1-204ENST00000409441 RNF183Q96D59 192 aa9.69□□□□□ -0.86
LIMS1-204ENST00000409441 RPL39LQ96EH5 51 aaKnown RBP9.69□□□□□ -0.86
LIMS1-204ENST00000409441 IGHV3OR16-12A0A075B7B8 117 aa9.68□□□□□ -0.86
LIMS1-204ENST00000409441 LINC01549A6NIU2 74 aa9.68□□□□□ -0.86
LIMS1-204ENST00000409441 PRSS1P07477 247 aa9.68□□□□□ -0.86
LIMS1-204ENST00000409441 RBMY1A1P0DJD3 496 aaKnown RBP9.68□□□□□ -0.86
LIMS1-204ENST00000409441 RBMY1CP0DJD4 496 aa9.68□□□□□ -0.86
LIMS1-204ENST00000409441 G0S2P27469 103 aa9.68□□□□□ -0.86
LIMS1-204ENST00000409441 RBMY1FQ15415 496 aaKnown RBP9.68□□□□□ -0.86
LIMS1-204ENST00000409441 LINC00469Q8N7U9 141 aa9.68□□□□□ -0.86
LIMS1-204ENST00000409441 TM2D3Q9BRN9 247 aa9.68□□□□□ -0.86
LIMS1-204ENST00000409441 OVOL2Q9BRP0 275 aa9.68□□□□□ -0.86
LIMS1-204ENST00000409441 DLEU1O43261 78 aa9.67□□□□□ -0.86
LIMS1-204ENST00000409441 ANKRD39Q53RE8 183 aa9.67□□□□□ -0.86
LIMS1-204ENST00000409441 TOMM6Q96B49 74 aa9.67□□□□□ -0.86
LIMS1-204ENST00000409441 LINC01587Q99440 93 aa9.67□□□□□ -0.86
LIMS1-204ENST00000409441 SPATA25Q9BR10 227 aa9.67□□□□□ -0.86
LIMS1-204ENST00000409441 TMEM208Q9BTX3 173 aa9.67□□□□□ -0.86
LIMS1-204ENST00000409441 RETNQ9HD89 108 aa9.67□□□□□ -0.86
LIMS1-204ENST00000409441 MDFICQ9P1T7 246 aa9.67□□□□□ -0.86
LIMS1-204ENST00000409441 DKK2Q9UBU2 259 aa9.67□□□□□ -0.86
LIMS1-204ENST00000409441 TP53TG1Q9Y2A0 90 aa9.67□□□□□ -0.86
LIMS1-204ENST00000409441 TRAV12-1A0A0B4J245 112 aa9.67□□□□□ -0.86
LIMS1-204ENST00000409441 TRBV6-5A0A0K0K1A5 114 aa9.67□□□□□ -0.86
LIMS1-204ENST00000409441 SUMO4Q6EEV6 95 aa9.67□□□□□ -0.86
LIMS1-204ENST00000409441 OR11H2Q8NH07 326 aa9.67□□□□□ -0.86
LIMS1-204ENST00000409441 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.66□□□□□ -0.86
LIMS1-204ENST00000409441 DPM2O94777 84 aa9.66□□□□□ -0.86
LIMS1-204ENST00000409441 IGKCP01834 107 aa9.66□□□□□ -0.86
LIMS1-204ENST00000409441 NHLRC4P0CG21 123 aaPredicted RBP9.66□□□□□ -0.86
LIMS1-204ENST00000409441 HINT1P49773 126 aaPredicted RBP9.66□□□□□ -0.86
LIMS1-204ENST00000409441 STPG4Q8N801 248 aa9.66□□□□□ -0.86
LIMS1-204ENST00000409441 LINC00467Q9BRT7 94 aa9.66□□□□□ -0.86
LIMS1-204ENST00000409441 A0A087WX48 190 aa9.65□□□□□ -0.86
LIMS1-204ENST00000409441 SIVA1O15304 175 aa9.65□□□□□ -0.86
LIMS1-204ENST00000409441 PRM2P04554 102 aa9.65□□□□□ -0.86
LIMS1-204ENST00000409441 FGF6P10767 208 aa9.65□□□□□ -0.86
LIMS1-204ENST00000409441 HTN1P15515 57 aa9.65□□□□□ -0.86
LIMS1-204ENST00000409441 POLR2KP53803 58 aaKnown RBP9.65□□□□□ -0.86
LIMS1-204ENST00000409441 PIK3CD-AS1Q5SR53 167 aa9.65□□□□□ -0.86
LIMS1-204ENST00000409441 BOD1L2Q8IYS8 172 aa9.65□□□□□ -0.86
LIMS1-204ENST00000409441 PTH2Q96A98 100 aa9.65□□□□□ -0.86
LIMS1-204ENST00000409441 CBY3A6NI87 242 aa9.64□□□□□ -0.87
LIMS1-204ENST00000409441 VCYO14598 125 aa9.64□□□□□ -0.87
LIMS1-204ENST00000409441 JPT2Q9H910 190 aa9.64□□□□□ -0.87
LIMS1-204ENST00000409441 X6R8D5 127 aa9.64□□□□□ -0.87
LIMS1-204ENST00000409441 A0A087WWL8 130 aa9.64□□□□□ -0.87
LIMS1-204ENST00000409441 F5H697 171 aa9.64□□□□□ -0.87
LIMS1-204ENST00000409441 CRYGDP07320 174 aa9.64□□□□□ -0.87
LIMS1-204ENST00000409441 C2orf91Q6ZV80 131 aa9.64□□□□□ -0.87
LIMS1-204ENST00000409441 SCGB3A1Q96QR1 104 aa9.64□□□□□ -0.87
LIMS1-204ENST00000409441 EDA2RQ9HAV5 297 aa9.64□□□□□ -0.87
LIMS1-204ENST00000409441 SMIM9A6NGZ8 99 aa9.63□□□□□ -0.87
LIMS1-204ENST00000409441 PLNP26678 52 aa9.63□□□□□ -0.87
LIMS1-204ENST00000409441 SMCPP49901 116 aaPredicted RBP9.63□□□□□ -0.87
LIMS1-204ENST00000409441 ZNF415Q09FC8 603 aa9.63□□□□□ -0.87
LIMS1-204ENST00000409441 ZNF876PQ49A33 203 aa9.63□□□□□ -0.87
LIMS1-204ENST00000409441 C2orf66Q6UXQ4 117 aa9.63□□□□□ -0.87
LIMS1-204ENST00000409441 KIR2DL4Q99706 377 aa9.63□□□□□ -0.87
LIMS1-204ENST00000409441 HHLA3Q9XRX5 114 aa9.63□□□□□ -0.87
LIMS1-204ENST00000409441 TRBV27A0A0K0K1C4 114 aa9.62□□□□□ -0.87
LIMS1-204ENST00000409441 H7C1H1 209 aa9.62□□□□□ -0.87
LIMS1-204ENST00000409441 AZU1P20160 251 aa9.62□□□□□ -0.87
LIMS1-204ENST00000409441 ZNF56Q15929 161 aa9.62□□□□□ -0.87
LIMS1-204ENST00000409441 RRN3P1Q2M238 152 aa9.62□□□□□ -0.87
LIMS1-204ENST00000409441 MPV17L2Q567V2 206 aa9.62□□□□□ -0.87
LIMS1-204ENST00000409441 BVES-AS1Q5T3Y7 98 aa9.62□□□□□ -0.87
LIMS1-204ENST00000409441 ERASQ7Z444 233 aa9.62□□□□□ -0.87
LIMS1-204ENST00000409441 TP73-AS1Q9UF72 201 aa9.62□□□□□ -0.87
LIMS1-204ENST00000409441 CYSLTR1Q9Y271 337 aa9.62□□□□□ -0.87
LIMS1-204ENST00000409441 LOC100996750A0A140TA64 210 aa9.61□□□□□ -0.87
LIMS1-204ENST00000409441 F8VRH5 84 aa9.61□□□□□ -0.87
LIMS1-204ENST00000409441 M0QY20 66 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 1967.2 ms