RNA–Protein interactions for RNA: ENST00000409417.5

PDLIM2-207, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,487 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-207ENST00000409417 SMIM15Q7Z3B0 74 aa13.51□□□□□ -0.25
PDLIM2-207ENST00000409417 C6orf223Q8N319 242 aa13.51□□□□□ -0.25
PDLIM2-207ENST00000409417 TRAV9-2A0A087WT02 112 aa13.5□□□□□ -0.25
PDLIM2-207ENST00000409417 SUMO4Q6EEV6 95 aa13.5□□□□□ -0.25
PDLIM2-207ENST00000409417 UQCC3Q6UW78 93 aa13.5□□□□□ -0.25
PDLIM2-207ENST00000409417 EPPK1P58107 5090 aaKnown RBP13.5□□□□□ -0.25
PDLIM2-207ENST00000409417 LINC01556Q5JQF7 62 aa13.48□□□□□ -0.25
PDLIM2-207ENST00000409417 NUP35Q8NFH5 326 aa13.48□□□□□ -0.25
PDLIM2-207ENST00000409417 NAT8BQ9UHF3 227 aa13.48□□□□□ -0.25
PDLIM2-207ENST00000409417 SMIM27A0A1W2PRY6 76 aa13.48□□□□□ -0.25
PDLIM2-207ENST00000409417 PNRC1Q12796 327 aaPredicted RBP13.48□□□□□ -0.25
PDLIM2-207ENST00000409417 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.48□□□□□ -0.25
PDLIM2-207ENST00000409417 DNAJC30Q96LL9 226 aa13.48□□□□□ -0.25
PDLIM2-207ENST00000409417 RASL11AQ6T310 242 aa13.47□□□□□ -0.25
PDLIM2-207ENST00000409417 DAZ4Q86SG3 579 aaKnown RBP13.47□□□□□ -0.25
PDLIM2-207ENST00000409417 C10orf126Q8N4M7 172 aa13.47□□□□□ -0.25
PDLIM2-207ENST00000409417 DAZ3Q9NR90 486 aaKnown RBP13.47□□□□□ -0.25
PDLIM2-207ENST00000409417 TNFRSF18Q9Y5U5 241 aa13.47□□□□□ -0.25
PDLIM2-207ENST00000409417 PRSS29PA6NIE9 313 aa13.46□□□□□ -0.25
PDLIM2-207ENST00000409417 RIGQ13278 110 aa13.45□□□□□ -0.26
PDLIM2-207ENST00000409417 DNAH17Q9UFH2 4485 aa13.44□□□□□ -0.26
PDLIM2-207ENST00000409417 GATD1Q8NB37 220 aa13.44□□□□□ -0.26
PDLIM2-207ENST00000409417 FRZBQ92765 325 aa13.44□□□□□ -0.26
PDLIM2-207ENST00000409417 TMEM191AQ9H0A3 160 aa13.44□□□□□ -0.26
PDLIM2-207ENST00000409417 NIT2Q9NQR4 276 aa13.44□□□□□ -0.26
PDLIM2-207ENST00000409417 TRBV6-8A0A0A6YYG3 113 aa13.43□□□□□ -0.26
PDLIM2-207ENST00000409417 TMEM218A2RU14 115 aa13.43□□□□□ -0.26
PDLIM2-207ENST00000409417 PPP1R2P9O14990 202 aa13.43□□□□□ -0.26
PDLIM2-207ENST00000409417 FAT2Q9NYQ8 4349 aa13.43□□□□□ -0.26
PDLIM2-207ENST00000409417 TRAV26-2A0A0B4J265 109 aa13.42□□□□□ -0.26
PDLIM2-207ENST00000409417 TMEM97Q5BJF2 176 aa13.42□□□□□ -0.26
PDLIM2-207ENST00000409417 COMMD7Q86VX2 200 aa13.42□□□□□ -0.26
PDLIM2-207ENST00000409417 LINC00862A6NCI5 91 aa13.41□□□□□ -0.26
PDLIM2-207ENST00000409417 IGHV3-30P01768 117 aa13.41□□□□□ -0.26
PDLIM2-207ENST00000409417 IGHV3-33P01772 117 aa13.41□□□□□ -0.26
PDLIM2-207ENST00000409417 MT-ND4LP03901 98 aa13.41□□□□□ -0.26
PDLIM2-207ENST00000409417 IGHV3-30-3P0DP02 117 aa13.41□□□□□ -0.26
PDLIM2-207ENST00000409417 IGHV3-30-5P0DP03 117 aa13.41□□□□□ -0.26
PDLIM2-207ENST00000409417 ADCYAP1P18509 176 aa13.41□□□□□ -0.26
PDLIM2-207ENST00000409417 NFE4Q86UQ8 179 aa13.41□□□□□ -0.26
PDLIM2-207ENST00000409417 NIT1Q86X76 327 aa13.41□□□□□ -0.26
PDLIM2-207ENST00000409417 A0A1B0GW15 77 aa13.4□□□□□ -0.26
PDLIM2-207ENST00000409417 Q8N3U1 123 aa13.4□□□□□ -0.26
PDLIM2-207ENST00000409417 ANAPC16Q96DE5 110 aa13.4□□□□□ -0.26
PDLIM2-207ENST00000409417 IBA57-AS1B1ANH7 110 aa13.39□□□□□ -0.27
PDLIM2-207ENST00000409417 F8W036 122 aa13.39□□□□□ -0.27
PDLIM2-207ENST00000409417 Q6ZRN7 208 aaPredicted RBP13.39□□□□□ -0.27
PDLIM2-207ENST00000409417 NTM-AS1Q6ZSK4 140 aa13.39□□□□□ -0.27
PDLIM2-207ENST00000409417 A0A1B0GVY2 172 aa13.38□□□□□ -0.27
PDLIM2-207ENST00000409417 TNP2Q05952 138 aa13.38□□□□□ -0.27
PDLIM2-207ENST00000409417 KCNIP4Q6PIL6 250 aa13.38□□□□□ -0.27
PDLIM2-207ENST00000409417 AMN1Q8IY45 258 aa13.38□□□□□ -0.27
PDLIM2-207ENST00000409417 RNF185Q96GF1 192 aa13.38□□□□□ -0.27
PDLIM2-207ENST00000409417 SEC11CQ9BY50 192 aa13.38□□□□□ -0.27
PDLIM2-207ENST00000409417 URGCP-MRPS24S4R325 110 aa13.38□□□□□ -0.27
PDLIM2-207ENST00000409417 RAB4AP20338 218 aa13.37□□□□□ -0.27
PDLIM2-207ENST00000409417 LAGE3Q14657 143 aa13.37□□□□□ -0.27
PDLIM2-207ENST00000409417 RPL39LQ96EH5 51 aaKnown RBP13.37□□□□□ -0.27
PDLIM2-207ENST00000409417 CHCHD7Q9BUK0 85 aa13.37□□□□□ -0.27
PDLIM2-207ENST00000409417 HECTD4Q9Y4D8 3996 aa13.37□□□□□ -0.27
PDLIM2-207ENST00000409417 CAMPP49913 170 aa13.36□□□□□ -0.27
PDLIM2-207ENST00000409417 MRAP2Q96G30 205 aa13.36□□□□□ -0.27
PDLIM2-207ENST00000409417 TRBV25-1A0A075B6N4 114 aa13.36□□□□□ -0.27
PDLIM2-207ENST00000409417 A0A087WX48 190 aa13.36□□□□□ -0.27
PDLIM2-207ENST00000409417 IQCJQ1A5X6 159 aa13.36□□□□□ -0.27
PDLIM2-207ENST00000409417 CHCHD5Q9BSY4 110 aa13.36□□□□□ -0.27
PDLIM2-207ENST00000409417 IGHV1-24A0A0C4DH33 117 aa13.35□□□□□ -0.27
PDLIM2-207ENST00000409417 TMEM262E9PQX1 116 aa13.35□□□□□ -0.27
PDLIM2-207ENST00000409417 S100A8P05109 93 aa13.35□□□□□ -0.27
PDLIM2-207ENST00000409417 PKIAP61925 76 aa13.35□□□□□ -0.27
PDLIM2-207ENST00000409417 HBBP68871 147 aa13.35□□□□□ -0.27
PDLIM2-207ENST00000409417 FAM104BQ5XKR9 115 aa13.35□□□□□ -0.27
PDLIM2-207ENST00000409417 MRPL54Q6P161 138 aaKnown RBP13.35□□□□□ -0.27
PDLIM2-207ENST00000409417 TRBV6-5A0A0K0K1A5 114 aa13.34□□□□□ -0.27
PDLIM2-207ENST00000409417 A0A1B0GXF2 115 aa13.34□□□□□ -0.27
PDLIM2-207ENST00000409417 GAS8-AS1O95177 125 aa13.34□□□□□ -0.27
PDLIM2-207ENST00000409417 ATP5L2Q7Z4Y8 100 aa13.34□□□□□ -0.27
PDLIM2-207ENST00000409417 SDHAF1A6NFY7 115 aa13.33□□□□□ -0.28
PDLIM2-207ENST00000409417 COTL1Q14019 142 aa13.33□□□□□ -0.28
PDLIM2-207ENST00000409417 BIRC6Q9NR09 4857 aa13.32□□□□□ -0.28
PDLIM2-207ENST00000409417 ELOBQ15370 118 aa13.32□□□□□ -0.28
PDLIM2-207ENST00000409417 Q9HAA7 133 aa13.32□□□□□ -0.28
PDLIM2-207ENST00000409417 TRAV8-3A0A0A6YYJ7 113 aa13.31□□□□□ -0.28
PDLIM2-207ENST00000409417 PPP1R17O96001 155 aa13.31□□□□□ -0.28
PDLIM2-207ENST00000409417 C10orf91Q5T1B1 145 aa13.31□□□□□ -0.28
PDLIM2-207ENST00000409417 ST20Q9HBF5 79 aa13.31□□□□□ -0.28
PDLIM2-207ENST00000409417 RPS10P46783 165 aaKnown RBP13.3□□□□□ -0.28
PDLIM2-207ENST00000409417 MRPL51Q4U2R6 128 aaKnown RBP13.3□□□□□ -0.28
PDLIM2-207ENST00000409417 MPV17L2Q567V2 206 aa13.3□□□□□ -0.28
PDLIM2-207ENST00000409417 IMMP2LQ96T52 175 aa13.3□□□□□ -0.28
PDLIM2-207ENST00000409417 TMEM243Q9BU79 118 aa13.3□□□□□ -0.28
PDLIM2-207ENST00000409417 CTDSP1Q9GZU7 261 aa13.3□□□□□ -0.28
PDLIM2-207ENST00000409417 KLK12Q9UKR0 248 aa13.3□□□□□ -0.28
PDLIM2-207ENST00000409417 PKD1P98161 4303 aa13.3□□□□□ -0.28
PDLIM2-207ENST00000409417 DEFB104AQ8WTQ1 72 aa13.29□□□□□ -0.28
PDLIM2-207ENST00000409417 CARHSP1Q9Y2V2 147 aaKnown RBP13.29□□□□□ -0.28
PDLIM2-207ENST00000409417 SMKR1H3BMG3 65 aa13.29□□□□□ -0.28
PDLIM2-207ENST00000409417 NCR2O95944 276 aa13.29□□□□□ -0.28
PDLIM2-207ENST00000409417 AMTP48728 403 aa13.29□□□□□ -0.28
PDLIM2-207ENST00000409417 GAGE6Q13070 117 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 111.9 ms