RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 TEX49A0A1B0GTD5 131 aa13.25□□□□□ -0.29
SQSTM1-202ENST00000389805 MSMBP08118 114 aa13.25□□□□□ -0.29
SQSTM1-202ENST00000389805 SRD5A1P18405 259 aa13.25□□□□□ -0.29
SQSTM1-202ENST00000389805 Q8N1Y9 231 aa13.25□□□□□ -0.29
SQSTM1-202ENST00000389805 SLC25A29Q8N8R3 303 aa13.25□□□□□ -0.29
SQSTM1-202ENST00000389805 MAPK1IP1LQ8NDC0 245 aa13.25□□□□□ -0.29
SQSTM1-202ENST00000389805 GAGE12JA6NER3 117 aa13.25□□□□□ -0.29
SQSTM1-202ENST00000389805 GAGE7O76087 117 aa13.25□□□□□ -0.29
SQSTM1-202ENST00000389805 GAGE12FP0CL80 117 aa13.25□□□□□ -0.29
SQSTM1-202ENST00000389805 GAGE12GP0CL81 117 aa13.25□□□□□ -0.29
SQSTM1-202ENST00000389805 GAGE12IP0CL82 117 aa13.25□□□□□ -0.29
SQSTM1-202ENST00000389805 GAGE4Q13068 117 aa13.25□□□□□ -0.29
SQSTM1-202ENST00000389805 EDN2P20800 178 aa13.24□□□□□ -0.29
SQSTM1-202ENST00000389805 ZNRF2Q8NHG8 242 aa13.24□□□□□ -0.29
SQSTM1-202ENST00000389805 ABCA12Q86UK0 2595 aa13.24□□□□□ -0.29
SQSTM1-202ENST00000389805 TRBV7-9A0A0J9YWB2 115 aa13.24□□□□□ -0.29
SQSTM1-202ENST00000389805 A6NDX4 124 aa13.24□□□□□ -0.29
SQSTM1-202ENST00000389805 JPT2Q9H910 190 aa13.24□□□□□ -0.29
SQSTM1-202ENST00000389805 SETD2Q9BYW2 2564 aaPredicted RBP13.24□□□□□ -0.29
SQSTM1-202ENST00000389805 IGHG2P01859 326 aa13.23□□□□□ -0.29
SQSTM1-202ENST00000389805 PRB1P04280 392 aa13.23□□□□□ -0.29
SQSTM1-202ENST00000389805 C9orf47Q6ZRZ4 202 aa13.23□□□□□ -0.29
SQSTM1-202ENST00000389805 F6UB75 175 aa13.23□□□□□ -0.29
SQSTM1-202ENST00000389805 IFITM1P13164 125 aa13.23□□□□□ -0.29
SQSTM1-202ENST00000389805 OPRPNQ99935 248 aaPredicted RBP13.23□□□□□ -0.29
SQSTM1-202ENST00000389805 ANKRD17O75179 2603 aaKnown RBP13.23□□□□□ -0.29
SQSTM1-202ENST00000389805 J3QQQ9 107 aa13.23□□□□□ -0.29
SQSTM1-202ENST00000389805 C3orf56Q8N813 242 aa13.23□□□□□ -0.29
SQSTM1-202ENST00000389805 PTPN13Q12923 2485 aa13.22□□□□□ -0.29
SQSTM1-202ENST00000389805 LGALS3P17931 250 aaKnown RBP13.22□□□□□ -0.29
SQSTM1-202ENST00000389805 RNASE4P34096 147 aaKnown RBP13.22□□□□□ -0.29
SQSTM1-202ENST00000389805 ASIPP42127 132 aa13.22□□□□□ -0.29
SQSTM1-202ENST00000389805 PMVKQ15126 192 aa13.22□□□□□ -0.29
SQSTM1-202ENST00000389805 FAM159AQ6UWV7 190 aa13.22□□□□□ -0.29
SQSTM1-202ENST00000389805 MUC4Q99102 2169 aa13.22□□□□□ -0.29
SQSTM1-202ENST00000389805 IGHV3-33P01772 117 aa13.22□□□□□ -0.29
SQSTM1-202ENST00000389805 C10orf99Q6UWK7 81 aa13.2□□□□□ -0.3
SQSTM1-202ENST00000389805 MUSTN1Q8IVN3 82 aa13.2□□□□□ -0.3
SQSTM1-202ENST00000389805 C15orf53Q8NAA6 179 aa13.2□□□□□ -0.3
SQSTM1-202ENST00000389805 USP24Q9UPU5 2620 aa13.2□□□□□ -0.3
SQSTM1-202ENST00000389805 A0A087WWL8 130 aa13.2□□□□□ -0.3
SQSTM1-202ENST00000389805 IGIPA6NJ69 53 aa13.2□□□□□ -0.3
SQSTM1-202ENST00000389805 F5H697 171 aa13.2□□□□□ -0.3
SQSTM1-202ENST00000389805 NDUFA4O00483 81 aa13.2□□□□□ -0.3
SQSTM1-202ENST00000389805 RPL32P62910 135 aaKnown RBP13.2□□□□□ -0.3
SQSTM1-202ENST00000389805 AMELXQ99217 191 aa13.2□□□□□ -0.3
SQSTM1-202ENST00000389805 MXRA5Q9NR99 2828 aa13.19□□□□□ -0.3
SQSTM1-202ENST00000389805 EPG5Q9HCE0 2579 aa13.19□□□□□ -0.3
SQSTM1-202ENST00000389805 ZFAND2AQ8N6M9 145 aa13.19□□□□□ -0.3
SQSTM1-202ENST00000389805 SORL1Q92673 2214 aa13.19□□□□□ -0.3
SQSTM1-202ENST00000389805 TRAV8-4A0A0B4J246 113 aa13.19□□□□□ -0.3
SQSTM1-202ENST00000389805 MRPL53Q96EL3 112 aaKnown RBP13.19□□□□□ -0.3
SQSTM1-202ENST00000389805 ZNF580Q9UK33 172 aa13.19□□□□□ -0.3
SQSTM1-202ENST00000389805 TMEM263Q8WUH6 116 aaKnown RBP13.18□□□□□ -0.3
SQSTM1-202ENST00000389805 ODF3Q96PU9 254 aa13.18□□□□□ -0.3
SQSTM1-202ENST00000389805 ADARB2-AS1A8MUL3 147 aa13.18□□□□□ -0.3
SQSTM1-202ENST00000389805 LINC01620Q4KN68 170 aa13.18□□□□□ -0.3
SQSTM1-202ENST00000389805 C9orf139Q6ZV77 190 aa13.18□□□□□ -0.3
SQSTM1-202ENST00000389805 ZNF256Q9Y2P7 627 aaPredicted RBP13.18□□□□□ -0.3
SQSTM1-202ENST00000389805 TRAV21A0A0B4J279 112 aa13.17□□□□□ -0.3
SQSTM1-202ENST00000389805 IGHV4-59P01825 116 aa13.17□□□□□ -0.3
SQSTM1-202ENST00000389805 RHPN1-AS1Q9BWJ2 59 aa13.17□□□□□ -0.3
SQSTM1-202ENST00000389805 B4DSR2 109 aa13.17□□□□□ -0.3
SQSTM1-202ENST00000389805 SOCS3O14543 225 aa13.17□□□□□ -0.3
SQSTM1-202ENST00000389805 PAPPA-AS1Q5QFB9 102 aa13.17□□□□□ -0.3
SQSTM1-202ENST00000389805 USMG5Q96IX5 58 aa13.17□□□□□ -0.3
SQSTM1-202ENST00000389805 RNASE3P12724 160 aaKnown RBP13.17□□□□□ -0.3
SQSTM1-202ENST00000389805 DEFB112Q30KQ8 113 aa13.16□□□□□ -0.3
SQSTM1-202ENST00000389805 FAM74A4Q5TZK3 123 aa13.16□□□□□ -0.3
SQSTM1-202ENST00000389805 IGLV1-40P01703 118 aa13.15□□□□□ -0.3
SQSTM1-202ENST00000389805 OR10J6PQ8NGY7 276 aa13.15□□□□□ -0.3
SQSTM1-202ENST00000389805 ATXN8Q156A1 80 aa13.14□□□□□ -0.31
SQSTM1-202ENST00000389805 SUMO4Q6EEV6 95 aa13.14□□□□□ -0.31
SQSTM1-202ENST00000389805 SDHAF1A6NFY7 115 aa13.14□□□□□ -0.31
SQSTM1-202ENST00000389805 PRSS2P07478 247 aa13.14□□□□□ -0.31
SQSTM1-202ENST00000389805 NPC2P61916 151 aa13.14□□□□□ -0.31
SQSTM1-202ENST00000389805 TRIAP1O43715 76 aa13.13□□□□□ -0.31
SQSTM1-202ENST00000389805 ZNF876PQ49A33 203 aa13.13□□□□□ -0.31
SQSTM1-202ENST00000389805 MEIG1Q5JSS6 88 aa13.13□□□□□ -0.31
SQSTM1-202ENST00000389805 Q6ZSV7 163 aa13.13□□□□□ -0.31
SQSTM1-202ENST00000389805 LINC00477Q96M19 166 aa13.13□□□□□ -0.31
SQSTM1-202ENST00000389805 TEX15Q9BXT5 2789 aa13.13□□□□□ -0.31
SQSTM1-202ENST00000389805 NOTCH3Q9UM47 2321 aa13.13□□□□□ -0.31
SQSTM1-202ENST00000389805 CCDC168Q8NDH2 2452 aa13.13□□□□□ -0.31
SQSTM1-202ENST00000389805 SONP18583 2426 aaKnown RBP13.12□□□□□ -0.31
SQSTM1-202ENST00000389805 H3BMM0 161 aa13.12□□□□□ -0.31
SQSTM1-202ENST00000389805 UBE2WQ96B02 151 aa13.12□□□□□ -0.31
SQSTM1-202ENST00000389805 NAV2Q8IVL1 2488 aa13.12□□□□□ -0.31
SQSTM1-202ENST00000389805 POLR2KP53803 58 aaKnown RBP13.12□□□□□ -0.31
SQSTM1-202ENST00000389805 LINC00315P59091 139 aa13.12□□□□□ -0.31
SQSTM1-202ENST00000389805 C2orf82Q6UX34 121 aa13.12□□□□□ -0.31
SQSTM1-202ENST00000389805 DUX3Q96PT4 197 aa13.12□□□□□ -0.31
SQSTM1-202ENST00000389805 CHCHD5Q9BSY4 110 aa13.12□□□□□ -0.31
SQSTM1-202ENST00000389805 H3BUA1 57 aa13.11□□□□□ -0.31
SQSTM1-202ENST00000389805 CFHR3Q02985 330 aa13.11□□□□□ -0.31
SQSTM1-202ENST00000389805 BBC3Q96PG8 261 aaPredicted RBP13.11□□□□□ -0.31
SQSTM1-202ENST00000389805 FAM110AQ9BQ89 295 aa13.11□□□□□ -0.31
SQSTM1-202ENST00000389805 DAZ1Q9NQZ3 744 aaKnown RBP13.11□□□□□ -0.31
SQSTM1-202ENST00000389805 ZNF56Q15929 161 aa13.11□□□□□ -0.31
SQSTM1-202ENST00000389805 MYO9AB2RTY4 2548 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms