RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 ANKRD11Q6UB99 2663 aaPredicted RBP3.71□□□□□ -1.82
PCDH9-201ENST00000377861 FAM19A3Q7Z5A8 133 aa3.71□□□□□ -1.82
PCDH9-201ENST00000377861 COX7B2Q8TF08 81 aa3.71□□□□□ -1.82
PCDH9-201ENST00000377861 TRGV1A0A0A0MS02 117 aa3.71□□□□□ -1.82
PCDH9-201ENST00000377861 TRAV13-1A0A0B4J241 112 aa3.71□□□□□ -1.82
PCDH9-201ENST00000377861 ZNRF2Q8NHG8 242 aa3.7□□□□□ -1.82
PCDH9-201ENST00000377861 USP9YO00507 2555 aaPredicted RBP3.7□□□□□ -1.82
PCDH9-201ENST00000377861 H3BPC8 53 aa3.7□□□□□ -1.82
PCDH9-201ENST00000377861 NREPQ16612 68 aa3.7□□□□□ -1.82
PCDH9-201ENST00000377861 ABCA4P78363 2273 aa3.7□□□□□ -1.82
PCDH9-201ENST00000377861 Q96MF0 132 aa3.7□□□□□ -1.82
PCDH9-201ENST00000377861 KLK5Q9Y337 293 aaPredicted RBP3.7□□□□□ -1.82
PCDH9-201ENST00000377861 TRBV6-8A0A0A6YYG3 113 aa3.7□□□□□ -1.82
PCDH9-201ENST00000377861 Q8IZM0 81 aa3.7□□□□□ -1.82
PCDH9-201ENST00000377861 NLRC5Q86WI3 1866 aa3.7□□□□□ -1.82
PCDH9-201ENST00000377861 DEFB131AP59861 70 aa3.7□□□□□ -1.82
PCDH9-201ENST00000377861 C17orf77Q96MU5 243 aa3.7□□□□□ -1.82
PCDH9-201ENST00000377861 K7EQD1 137 aa3.7□□□□□ -1.82
PCDH9-201ENST00000377861 Q8TAT8 98 aa3.7□□□□□ -1.82
PCDH9-201ENST00000377861 CRYGDP07320 174 aa3.7□□□□□ -1.82
PCDH9-201ENST00000377861 C9orf66Q5T8R8 295 aa3.7□□□□□ -1.82
PCDH9-201ENST00000377861 PCNX2A6NKB5 2137 aa3.7□□□□□ -1.82
PCDH9-201ENST00000377861 H3BTX0 84 aa3.7□□□□□ -1.82
PCDH9-201ENST00000377861 TRBV12-3P01733 135 aa3.69□□□□□ -1.82
PCDH9-201ENST00000377861 DOCK3Q8IZD9 2030 aa3.69□□□□□ -1.82
PCDH9-201ENST00000377861 RPL18AQ02543 176 aaKnown RBP3.69□□□□□ -1.82
PCDH9-201ENST00000377861 LINC00308Q8TCZ7 52 aa3.69□□□□□ -1.82
PCDH9-201ENST00000377861 SBF1O95248 1867 aa3.69□□□□□ -1.82
PCDH9-201ENST00000377861 DENND4AQ7Z401 1863 aa3.69□□□□□ -1.82
PCDH9-201ENST00000377861 E7EUB6 86 aa3.69□□□□□ -1.82
PCDH9-201ENST00000377861 GNRH2O43555 120 aa3.69□□□□□ -1.82
PCDH9-201ENST00000377861 MIFP14174 115 aa3.69□□□□□ -1.82
PCDH9-201ENST00000377861 NHLRC4P0CG21 123 aaPredicted RBP3.69□□□□□ -1.82
PCDH9-201ENST00000377861 MSRB1Q9NZV6 116 aa3.69□□□□□ -1.82
PCDH9-201ENST00000377861 CCKP06307 115 aa3.69□□□□□ -1.82
PCDH9-201ENST00000377861 VWA8A3KMH1 1905 aa3.69□□□□□ -1.82
PCDH9-201ENST00000377861 CRYGAP11844 174 aa3.69□□□□□ -1.82
PCDH9-201ENST00000377861 A0A087WWL8 130 aa3.69□□□□□ -1.82
PCDH9-201ENST00000377861 SHISA2Q6UWI4 295 aa3.69□□□□□ -1.82
PCDH9-201ENST00000377861 KNCNA6PVL3 124 aa3.68□□□□□ -1.82
PCDH9-201ENST00000377861 KIAA1671Q9BY89 1806 aa3.68□□□□□ -1.82
PCDH9-201ENST00000377861 DCANP1Q8TF63 244 aa3.68□□□□□ -1.82
PCDH9-201ENST00000377861 COX7CP15954 63 aa3.68□□□□□ -1.82
PCDH9-201ENST00000377861 DAD1P61803 113 aa3.68□□□□□ -1.82
PCDH9-201ENST00000377861 USP9XQ93008 2570 aaPredicted RBP3.68□□□□□ -1.82
PCDH9-201ENST00000377861 MRPL55Q7Z7F7 128 aaKnown RBP3.68□□□□□ -1.82
PCDH9-201ENST00000377861 TRAV7A0A075B6U4 112 aa3.68□□□□□ -1.82
PCDH9-201ENST00000377861 A8MTW9 85 aa3.68□□□□□ -1.82
PCDH9-201ENST00000377861 HIST1H4AP62805 103 aaKnown RBP3.68□□□□□ -1.82
PCDH9-201ENST00000377861 CDC42SE2Q9NRR3 84 aa3.68□□□□□ -1.82
PCDH9-201ENST00000377861 LINC00322Q6ZN03 302 aaPredicted RBP3.68□□□□□ -1.82
PCDH9-201ENST00000377861 FAM19A4Q96LR4 140 aa3.68□□□□□ -1.82
PCDH9-201ENST00000377861 SPG11Q96JI7 2443 aa3.68□□□□□ -1.82
PCDH9-201ENST00000377861 SMAD5-AS1Q9Y6J3 95 aa3.68□□□□□ -1.82
PCDH9-201ENST00000377861 IGLV5-39A0A0G2JS06 123 aa3.68□□□□□ -1.82
PCDH9-201ENST00000377861 CDK2AP2O75956 126 aa3.68□□□□□ -1.82
PCDH9-201ENST00000377861 LINC00310P59036 64 aa3.68□□□□□ -1.82
PCDH9-201ENST00000377861 C16orf95Q9H693 158 aa3.68□□□□□ -1.82
PCDH9-201ENST00000377861 DOCK9Q9BZ29 2069 aa3.68□□□□□ -1.82
PCDH9-201ENST00000377861 IGHV3-35A0A0C4DH35 117 aa3.68□□□□□ -1.82
PCDH9-201ENST00000377861 DOPEY2Q9Y3R5 2298 aa3.67□□□□□ -1.82
PCDH9-201ENST00000377861 IGLV4-3A0A075B6K6 122 aa3.67□□□□□ -1.82
PCDH9-201ENST00000377861 KIF25-AS1Q9Y6Z4 181 aa3.67□□□□□ -1.82
PCDH9-201ENST00000377861 MYOFQ9NZM1 2061 aa3.67□□□□□ -1.82
PCDH9-201ENST00000377861 Q6JHZ5 121 aa3.67□□□□□ -1.82
PCDH9-201ENST00000377861 IGHV4-38-2P0DP08 117 aa3.67□□□□□ -1.82
PCDH9-201ENST00000377861 ATP1A1-AS1Q5TC04 95 aa3.67□□□□□ -1.82
PCDH9-201ENST00000377861 CUL9Q8IWT3 2517 aa3.67□□□□□ -1.82
PCDH9-201ENST00000377861 EGFEM1PQ0D2K5 195 aa3.67□□□□□ -1.82
PCDH9-201ENST00000377861 PLCE1Q9P212 2302 aa3.67□□□□□ -1.82
PCDH9-201ENST00000377861 IGHV4-28A0A0C4DH34 117 aa3.67□□□□□ -1.82
PCDH9-201ENST00000377861 M0R378 163 aa3.67□□□□□ -1.82
PCDH9-201ENST00000377861 NKAPP1Q8N9T2 125 aa3.67□□□□□ -1.82
PCDH9-201ENST00000377861 TRAV12-2A0A075B6T6 113 aa3.67□□□□□ -1.82
PCDH9-201ENST00000377861 A0A0J9YXV3 536 aa3.67□□□□□ -1.82
PCDH9-201ENST00000377861 C2orf48Q96LS8 159 aa3.67□□□□□ -1.82
PCDH9-201ENST00000377861 IGHV3-11P01762 117 aa3.66□□□□□ -1.82
PCDH9-201ENST00000377861 TOMM7Q9P0U1 55 aa3.66□□□□□ -1.82
PCDH9-201ENST00000377861 G3V318 75 aa3.66□□□□□ -1.82
PCDH9-201ENST00000377861 PTPRQQ9UMZ3 2332 aa3.66□□□□□ -1.82
PCDH9-201ENST00000377861 C1orf43Q9BWL3 253 aa3.66□□□□□ -1.82
PCDH9-201ENST00000377861 NBASA2RRP1 2371 aa3.66□□□□□ -1.82
PCDH9-201ENST00000377861 CHD8Q9HCK8 2581 aa3.66□□□□□ -1.82
PCDH9-201ENST00000377861 CLPSL1A2RUU4 121 aa3.66□□□□□ -1.82
PCDH9-201ENST00000377861 DEFB113Q30KQ7 82 aa3.66□□□□□ -1.82
PCDH9-201ENST00000377861 KLHL30-AS1Q8NEE0 82 aa3.66□□□□□ -1.82
PCDH9-201ENST00000377861 IGKV3-7A0A075B6H7 116 aa3.66□□□□□ -1.82
PCDH9-201ENST00000377861 TSHBP01222 138 aa3.66□□□□□ -1.82
PCDH9-201ENST00000377861 ATG2BQ96BY7 2078 aa3.66□□□□□ -1.82
PCDH9-201ENST00000377861 MYO7BQ6PIF6 2116 aa3.65□□□□□ -1.82
PCDH9-201ENST00000377861 C20orf173Q96LM9 149 aa3.65□□□□□ -1.82
PCDH9-201ENST00000377861 SPINK13Q1W4C9 94 aa3.65□□□□□ -1.82
PCDH9-201ENST00000377861 OTOGLQ3ZCN5 2332 aa3.65□□□□□ -1.83
PCDH9-201ENST00000377861 LINC00482Q8N8I6 264 aa3.65□□□□□ -1.83
PCDH9-201ENST00000377861 SMKR1H3BMG3 65 aa3.65□□□□□ -1.83
PCDH9-201ENST00000377861 URB1-AS1Q96HZ7 61 aa3.65□□□□□ -1.83
PCDH9-201ENST00000377861 HEATR5AQ86XA9 2040 aa3.65□□□□□ -1.83
PCDH9-201ENST00000377861 A0A1W2PNU3 283 aaPredicted RBP3.65□□□□□ -1.83
PCDH9-201ENST00000377861 PIEZO2Q9H5I5 2752 aa3.65□□□□□ -1.83
PCDH9-201ENST00000377861 TCF15Q12870 199 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms