RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 LEPROTO15243 131 aa12.14□□□□□ -0.47
SDC4-201ENST00000372733 ZNF22P17026 224 aaPredicted RBP12.14□□□□□ -0.47
SDC4-201ENST00000372733 TRPT1Q86TN4 253 aaKnown RBP12.14□□□□□ -0.47
SDC4-201ENST00000372733 MAP1AP78559 2803 aaPredicted RBP12.13□□□□□ -0.47
SDC4-201ENST00000372733 UCNP55089 124 aa12.13□□□□□ -0.47
SDC4-201ENST00000372733 A0A0J9YXV3 536 aa12.13□□□□□ -0.47
SDC4-201ENST00000372733 IGHV3-33P01772 117 aa12.13□□□□□ -0.47
SDC4-201ENST00000372733 RHOHQ15669 191 aa12.13□□□□□ -0.47
SDC4-201ENST00000372733 C9JAW5 83 aa12.12□□□□□ -0.47
SDC4-201ENST00000372733 SPINK13Q1W4C9 94 aa12.12□□□□□ -0.47
SDC4-201ENST00000372733 TMEM263Q8WUH6 116 aaKnown RBP12.12□□□□□ -0.47
SDC4-201ENST00000372733 TRAV26-1A0A087WT03 109 aa12.12□□□□□ -0.47
SDC4-201ENST00000372733 RHODO00212 210 aa12.12□□□□□ -0.47
SDC4-201ENST00000372733 Q5PR19 223 aa12.12□□□□□ -0.47
SDC4-201ENST00000372733 MUSTN1Q8IVN3 82 aa12.12□□□□□ -0.47
SDC4-201ENST00000372733 C20orf203Q8NBC4 194 aa12.12□□□□□ -0.47
SDC4-201ENST00000372733 SLC25A20O43772 301 aa12.11□□□□□ -0.47
SDC4-201ENST00000372733 CFHR3Q02985 330 aa12.11□□□□□ -0.47
SDC4-201ENST00000372733 A0A0J9YX75 114 aa12.11□□□□□ -0.47
SDC4-201ENST00000372733 K7EMT4 169 aa12.11□□□□□ -0.47
SDC4-201ENST00000372733 C10orf99Q6UWK7 81 aa12.11□□□□□ -0.47
SDC4-201ENST00000372733 IGLV4-3A0A075B6K6 122 aa12.1□□□□□ -0.47
SDC4-201ENST00000372733 ADARB2-AS1A8MUL3 147 aa12.1□□□□□ -0.47
SDC4-201ENST00000372733 ELANEP08246 267 aa12.1□□□□□ -0.47
SDC4-201ENST00000372733 LY6DQ14210 128 aa12.1□□□□□ -0.47
SDC4-201ENST00000372733 IGHV1OR15-1A0A075B7D0 117 aa12.1□□□□□ -0.47
SDC4-201ENST00000372733 PIMREGQ9BSJ6 248 aa12.1□□□□□ -0.47
SDC4-201ENST00000372733 ERG28Q9UKR5 140 aa12.1□□□□□ -0.47
SDC4-201ENST00000372733 ITPR1Q14643 2758 aa12.09□□□□□ -0.47
SDC4-201ENST00000372733 A0A0B4J2C4 111 aa12.08□□□□□ -0.47
SDC4-201ENST00000372733 Q1RN00 199 aa12.08□□□□□ -0.47
SDC4-201ENST00000372733 I3L3M4 83 aa12.08□□□□□ -0.48
SDC4-201ENST00000372733 ODF3Q96PU9 254 aa12.08□□□□□ -0.48
SDC4-201ENST00000372733 VCX2Q9H322 139 aa12.08□□□□□ -0.48
SDC4-201ENST00000372733 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.07□□□□□ -0.481e-6■■□□□ 13.2
SDC4-201ENST00000372733 CRYBG3Q68DQ2 2970 aa12.07□□□□□ -0.48
SDC4-201ENST00000372733 A0A0J9YXY3 114 aa12.07□□□□□ -0.48
SDC4-201ENST00000372733 SNRPD3P62318 126 aaKnown RBP12.07□□□□□ -0.48
SDC4-201ENST00000372733 IGHV3-73A0A0B4J1V6 119 aa12.07□□□□□ -0.48
SDC4-201ENST00000372733 M0R2P5 195 aa12.07□□□□□ -0.48
SDC4-201ENST00000372733 BEX4Q9NWD9 120 aaPredicted RBP12.07□□□□□ -0.48
SDC4-201ENST00000372733 SORL1Q92673 2214 aa12.06□□□□□ -0.48
SDC4-201ENST00000372733 K7EQG2 157 aa12.06□□□□□ -0.48
SDC4-201ENST00000372733 RNASE13Q5GAN3 156 aaKnown RBP12.06□□□□□ -0.48
SDC4-201ENST00000372733 CEMP1Q6PRD7 247 aaPredicted RBP12.06□□□□□ -0.48
SDC4-201ENST00000372733 C10orf105Q8TEF2 133 aa12.06□□□□□ -0.48
SDC4-201ENST00000372733 SPXQ9BT56 116 aa12.06□□□□□ -0.48
SDC4-201ENST00000372733 IGHV4-30-2A0A087WSY4 118 aa12.06□□□□□ -0.48
SDC4-201ENST00000372733 IGHV3-30-3P0DP02 117 aa12.06□□□□□ -0.48
SDC4-201ENST00000372733 CD28P10747 220 aa12.06□□□□□ -0.48
SDC4-201ENST00000372733 SPG11Q96JI7 2443 aa12.05□□□□□ -0.48
SDC4-201ENST00000372733 TRAV8-3A0A0A6YYJ7 113 aa12.05□□□□□ -0.48
SDC4-201ENST00000372733 AVPP01185 164 aa12.05□□□□□ -0.48
SDC4-201ENST00000372733 PSMB8P28062 276 aa12.05□□□□□ -0.48
SDC4-201ENST00000372733 CELSR2Q9HCU4 2923 aa12.05□□□□□ -0.48
SDC4-201ENST00000372733 PROK1P58294 105 aa12.05□□□□□ -0.48
SDC4-201ENST00000372733 NTN5Q8WTR8 489 aaPredicted RBP12.05□□□□□ -0.48
SDC4-201ENST00000372733 FAM104AQ969W3 186 aa12.05□□□□□ -0.48
SDC4-201ENST00000372733 DOPEY2Q9Y3R5 2298 aa12.05□□□□□ -0.48
SDC4-201ENST00000372733 CSPG4Q6UVK1 2322 aa12.04□□□□□ -0.48
SDC4-201ENST00000372733 HTN1P15515 57 aa12.04□□□□□ -0.48
SDC4-201ENST00000372733 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.04□□□□□ -0.48
SDC4-201ENST00000372733 RNF183Q96D59 192 aa12.04□□□□□ -0.48
SDC4-201ENST00000372733 DUX5Q96PT3 197 aa12.04□□□□□ -0.48
SDC4-201ENST00000372733 TIMM21Q9BVV7 248 aa12.04□□□□□ -0.48
SDC4-201ENST00000372733 PIEZO1Q92508 2521 aa12.03□□□□□ -0.48
SDC4-201ENST00000372733 RBMY1A1P0DJD3 496 aaKnown RBP12.03□□□□□ -0.48
SDC4-201ENST00000372733 RBMY1CP0DJD4 496 aa12.03□□□□□ -0.48
SDC4-201ENST00000372733 SYNJ2BPP57105 145 aa12.03□□□□□ -0.48
SDC4-201ENST00000372733 RBMY1FQ15415 496 aaKnown RBP12.03□□□□□ -0.48
SDC4-201ENST00000372733 LINC01620Q4KN68 170 aa12.03□□□□□ -0.48
SDC4-201ENST00000372733 LITAFQ99732 161 aa12.03□□□□□ -0.48
SDC4-201ENST00000372733 TRIAP1O43715 76 aa12.03□□□□□ -0.48
SDC4-201ENST00000372733 MSMBP08118 114 aa12.03□□□□□ -0.48
SDC4-201ENST00000372733 CCL19Q99731 98 aa12.03□□□□□ -0.48
SDC4-201ENST00000372733 IGHV4-59P01825 116 aa12.02□□□□□ -0.49
SDC4-201ENST00000372733 ATXN8Q156A1 80 aa12.02□□□□□ -0.49
SDC4-201ENST00000372733 TMEM262E9PQX1 116 aa12.02□□□□□ -0.49
SDC4-201ENST00000372733 GNLYP22749 145 aa12.02□□□□□ -0.49
SDC4-201ENST00000372733 GATA3P23771 443 aa12.02□□□□□ -0.49
SDC4-201ENST00000372733 M0QXV9 152 aa12.01□□□□□ -0.49
SDC4-201ENST00000372733 PRSS2P07478 247 aa12.01□□□□□ -0.49
SDC4-201ENST00000372733 Q9UF83 564 aa12.01□□□□□ -0.49
SDC4-201ENST00000372733 TRGV11A0A075B6L2 103 aa12.01□□□□□ -0.49
SDC4-201ENST00000372733 KNCNA6PVL3 124 aa12.01□□□□□ -0.49
SDC4-201ENST00000372733 A8MZ25 164 aa12.01□□□□□ -0.49
SDC4-201ENST00000372733 PRM2P04554 102 aa12.01□□□□□ -0.49
SDC4-201ENST00000372733 NPC2P61916 151 aa12.01□□□□□ -0.49
SDC4-201ENST00000372733 ADAMTSL4-AS1Q5T5F5 129 aa12.01□□□□□ -0.49
SDC4-201ENST00000372733 ATP5J2P56134 94 aa12□□□□□ -0.49
SDC4-201ENST00000372733 ZFAND6Q6FIF0 208 aa12□□□□□ -0.49
SDC4-201ENST00000372733 CITED1Q99966 193 aa12□□□□□ -0.49
SDC4-201ENST00000372733 MRPS36P82909 103 aaKnown RBP12□□□□□ -0.49
SDC4-201ENST00000372733 Q6ZSV7 163 aa12□□□□□ -0.49
SDC4-201ENST00000372733 ANAPC13Q9BS18 74 aa12□□□□□ -0.49
SDC4-201ENST00000372733 PRRC2AP48634 2157 aaKnown RBP11.99□□□□□ -0.49
SDC4-201ENST00000372733 TEX49A0A1B0GTD5 131 aa11.99□□□□□ -0.49
SDC4-201ENST00000372733 NDUFA12Q9UI09 145 aa11.99□□□□□ -0.49
SDC4-201ENST00000372733 CREBBPQ92793 2442 aa11.99□□□□□ -0.49
SDC4-201ENST00000372733 TEX29Q8N6K0 151 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms