RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 A0A0J9YX75 114 aa11.33□□□□□ -0.6
CHD4-201ENST00000357008 PDE6GP18545 87 aa11.33□□□□□ -0.6
CHD4-201ENST00000357008 SEM1Q6ZVN7 128 aa11.33□□□□□ -0.6
CHD4-201ENST00000357008 NFE4Q86UQ8 179 aa11.33□□□□□ -0.6
CHD4-201ENST00000357008 IGHV3-30P01768 117 aa11.32□□□□□ -0.6
CHD4-201ENST00000357008 IGHV3-33P01772 117 aa11.32□□□□□ -0.6
CHD4-201ENST00000357008 IGHV3-30-5P0DP03 117 aa11.32□□□□□ -0.6
CHD4-201ENST00000357008 NUP210Q8TEM1 1887 aaPredicted RBP11.32□□□□□ -0.6
CHD4-201ENST00000357008 IGLC6P0CF74 106 aa11.32□□□□□ -0.6
CHD4-201ENST00000357008 ZNF295-AS1Q8N0V1 137 aa11.32□□□□□ -0.6
CHD4-201ENST00000357008 DIRC1Q969H9 104 aa11.32□□□□□ -0.6
CHD4-201ENST00000357008 ZMAT4Q9H898 229 aa11.32□□□□□ -0.6
CHD4-201ENST00000357008 BRWD1-AS2P59051 145 aa11.32□□□□□ -0.6
CHD4-201ENST00000357008 MBD6Q96DN6 1003 aa11.32□□□□□ -0.6
CHD4-201ENST00000357008 TM2D2Q9BX73 214 aa11.32□□□□□ -0.6
CHD4-201ENST00000357008 PROP1O75360 226 aa11.32□□□□□ -0.6
CHD4-201ENST00000357008 ZFP36P26651 326 aaKnown RBP11.32□□□□□ -0.6
CHD4-201ENST00000357008 TIRAPP58753 221 aa11.32□□□□□ -0.6
CHD4-201ENST00000357008 TRBV10-1A0A0K0K1A3 114 aa11.31□□□□□ -0.6
CHD4-201ENST00000357008 MSMPQ1L6U9 139 aa11.31□□□□□ -0.6
CHD4-201ENST00000357008 HIGD2BQ4VC39 106 aa11.31□□□□□ -0.6
CHD4-201ENST00000357008 UNQ9165/PRO28630Q6UXU0 137 aa11.31□□□□□ -0.6
CHD4-201ENST00000357008 LINC00574Q9H8X3 128 aa11.31□□□□□ -0.6
CHD4-201ENST00000357008 PCNX2A6NKB5 2137 aa11.31□□□□□ -0.6
CHD4-201ENST00000357008 A0A0J9YXY3 114 aa11.31□□□□□ -0.6
CHD4-201ENST00000357008 FRMPD3Q5JV73 1810 aa11.31□□□□□ -0.6
CHD4-201ENST00000357008 ARHGAP21Q5T5U3 1957 aa11.3□□□□□ -0.6
CHD4-201ENST00000357008 SPAG11BQ08648 103 aa11.3□□□□□ -0.6
CHD4-201ENST00000357008 Q6ZPA2 131 aa11.3□□□□□ -0.6
CHD4-201ENST00000357008 SIRPDQ9H106 197 aa11.3□□□□□ -0.6
CHD4-201ENST00000357008 DEFB113Q30KQ7 82 aa11.29□□□□□ -0.6
CHD4-201ENST00000357008 RNF183Q96D59 192 aa11.29□□□□□ -0.6
CHD4-201ENST00000357008 DENND4AQ7Z401 1863 aa11.29□□□□□ -0.6
CHD4-201ENST00000357008 OBSL1O75147 1896 aa11.29□□□□□ -0.6
CHD4-201ENST00000357008 YPEL4Q96NS1 127 aa11.29□□□□□ -0.6
CHD4-201ENST00000357008 COL4A3Q01955 1670 aa11.29□□□□□ -0.6
CHD4-201ENST00000357008 HIST2H2BDQ6DRA6 164 aa11.29□□□□□ -0.6
CHD4-201ENST00000357008 NDUFV3P56181 108 aaKnown RBP11.29□□□□□ -0.6
CHD4-201ENST00000357008 C14orf132Q9NPU4 83 aa11.29□□□□□ -0.6
CHD4-201ENST00000357008 SPANXB1Q9NS25 103 aaPredicted RBP11.29□□□□□ -0.6
CHD4-201ENST00000357008 PLA2G5P39877 138 aa11.28□□□□□ -0.6
CHD4-201ENST00000357008 CCL18P55774 89 aa11.28□□□□□ -0.6
CHD4-201ENST00000357008 NEXN-AS1Q8NBZ9 246 aa11.28□□□□□ -0.6
CHD4-201ENST00000357008 CHKB-CPT1BH3BT56 60 aa11.28□□□□□ -0.6
CHD4-201ENST00000357008 J3QKU1 62 aa11.28□□□□□ -0.6
CHD4-201ENST00000357008 SPRY4Q9C004 299 aa11.28□□□□□ -0.6
CHD4-201ENST00000357008 ESM1Q9NQ30 184 aa11.28□□□□□ -0.6
CHD4-201ENST00000357008 MT-ATP8P03928 68 aa11.28□□□□□ -0.6
CHD4-201ENST00000357008 CEMP1Q6PRD7 247 aaPredicted RBP11.28□□□□□ -0.6
CHD4-201ENST00000357008 TMEM263Q8WUH6 116 aaKnown RBP11.28□□□□□ -0.6
CHD4-201ENST00000357008 TRBV12-3P01733 135 aa11.27□□□□□ -0.61
CHD4-201ENST00000357008 PRB2P02812 416 aaPredicted RBP11.26□□□□□ -0.61
CHD4-201ENST00000357008 ADORA2A-AS1P86434 159 aa11.26□□□□□ -0.61
CHD4-201ENST00000357008 CCDC140Q96MF4 163 aa11.26□□□□□ -0.61
CHD4-201ENST00000357008 TNCP24821 2201 aa11.26□□□□□ -0.61
CHD4-201ENST00000357008 CRIP3Q6Q6R5 217 aa11.26□□□□□ -0.61
CHD4-201ENST00000357008 TP53TG3Q9ULZ0 132 aa11.26□□□□□ -0.61
CHD4-201ENST00000357008 DAZAP2Q15038 168 aaPredicted RBP11.25□□□□□ -0.61
CHD4-201ENST00000357008 C4orf3Q8WVX3 66 aa11.25□□□□□ -0.61
CHD4-201ENST00000357008 ODF3Q96PU9 254 aa11.25□□□□□ -0.61
CHD4-201ENST00000357008 TEX49A0A1B0GTD5 131 aa11.25□□□□□ -0.61
CHD4-201ENST00000357008 EIF4EBP1Q13541 118 aaPredicted RBP11.25□□□□□ -0.61
CHD4-201ENST00000357008 UQCRQO14949 82 aa11.25□□□□□ -0.61
CHD4-201ENST00000357008 IGKV2D-26A0A0A0MRZ7 120 aa11.24□□□□□ -0.61
CHD4-201ENST00000357008 NCOA6Q14686 2063 aaPredicted RBP11.24□□□□□ -0.61
CHD4-201ENST00000357008 FREM1Q5H8C1 2179 aa11.24□□□□□ -0.61
CHD4-201ENST00000357008 A6NDX4 124 aa11.24□□□□□ -0.61
CHD4-201ENST00000357008 PRO0255Q9UI72 69 aa11.24□□□□□ -0.61
CHD4-201ENST00000357008 KLK12Q9UKR0 248 aa11.24□□□□□ -0.61
CHD4-201ENST00000357008 COX7BP24311 80 aa11.24□□□□□ -0.61
CHD4-201ENST00000357008 MYCNOSP40205 109 aa11.24□□□□□ -0.61
CHD4-201ENST00000357008 PTPRQQ9UMZ3 2332 aa11.23□□□□□ -0.61
CHD4-201ENST00000357008 CLPSL1A2RUU4 121 aa11.23□□□□□ -0.61
CHD4-201ENST00000357008 TP73-AS1Q9UF72 201 aa11.23□□□□□ -0.61
CHD4-201ENST00000357008 UPK3BQ9BT76 320 aa11.23□□□□□ -0.61
CHD4-201ENST00000357008 TRAV23DV6A0A075B6W5 121 aa11.22□□□□□ -0.61
CHD4-201ENST00000357008 ODF3BA8MYP8 253 aa11.22□□□□□ -0.61
CHD4-201ENST00000357008 FBXL19-AS1Q494R0 122 aa11.22□□□□□ -0.61
CHD4-201ENST00000357008 TMEM223A0PJW6 202 aa11.21□□□□□ -0.61
CHD4-201ENST00000357008 MAP6D1Q9H9H5 199 aa11.21□□□□□ -0.61
CHD4-201ENST00000357008 U3KQK5 164 aa11.21□□□□□ -0.61
CHD4-201ENST00000357008 TNRC6BQ9UPQ9 1833 aaKnown RBP11.21□□□□□ -0.61
CHD4-201ENST00000357008 FAM208BQ5VWN6 2430 aa11.21□□□□□ -0.61
CHD4-201ENST00000357008 ZNF22P17026 224 aaPredicted RBP11.21□□□□□ -0.61
CHD4-201ENST00000357008 P0DMU3 169 aa11.21□□□□□ -0.62
CHD4-201ENST00000357008 FAM231AP0DMU4 169 aa11.21□□□□□ -0.62
CHD4-201ENST00000357008 FAM231CP0DMU5 169 aa11.21□□□□□ -0.62
CHD4-201ENST00000357008 SPATA25Q9BR10 227 aa11.21□□□□□ -0.62
CHD4-201ENST00000357008 ATRXP46100 2492 aa11.21□□□□□ -0.62
CHD4-201ENST00000357008 A0A1W2PNU3 283 aaPredicted RBP11.21□□□□□ -0.62
CHD4-201ENST00000357008 UBE2AP49459 152 aa11.21□□□□□ -0.62
CHD4-201ENST00000357008 ZFAND2AQ8N6M9 145 aa11.21□□□□□ -0.62
CHD4-201ENST00000357008 MAPKAPK5-AS1Q8N8E1 139 aa11.21□□□□□ -0.62
CHD4-201ENST00000357008 C1orf229Q6ZS94 237 aaPredicted RBP11.2□□□□□ -0.62
CHD4-201ENST00000357008 CDKN2A-AS1Q9UH64 79 aa11.2□□□□□ -0.62
CHD4-201ENST00000357008 DEFB135Q30KP9 77 aa11.2□□□□□ -0.62
CHD4-201ENST00000357008 TRBV30A0A0K0K1B3 111 aa11.19□□□□□ -0.62
CHD4-201ENST00000357008 UFSP1Q6NVU6 142 aa11.19□□□□□ -0.62
CHD4-201ENST00000357008 BPY2O14599 106 aa11.19□□□□□ -0.62
CHD4-201ENST00000357008 RBX1P62877 108 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms