RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 Q6ZUT4 128 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 ATOH7Q8N100 152 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 TEX29Q8N6K0 151 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 CNEP1R1Q8N9A8 125 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 OR10AG1Q8NH19 301 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 VSTM2AQ8TAG5 236 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 CT55Q8WUE5 264 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 PPP1R1CQ8WVI7 109 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 S100A16Q96FQ6 103 aaKnown RBP1.5□□□□□ -2.17
HMGB1-201ENST00000326004 OR4C12Q96R67 309 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 OR8B2Q96RD0 313 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 IMMP2LQ96T52 175 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 AMELYQ99218 206 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 FAM103A1Q9BTL3 118 aaKnown RBP1.5□□□□□ -2.17
HMGB1-201ENST00000326004 CXCL16Q9H2A7 254 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 MANBALQ9NQG1 85 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 CISHQ9NSE2 258 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 SOX21Q9Y651 276 aaPredicted RBP1.5□□□□□ -2.17
HMGB1-201ENST00000326004 SPCS1Q9Y6A9 102 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 LINC00312Q9Y6C7 94 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 PRKDCP78527 4128 aaKnown RBP1.5□□□□□ -2.17
HMGB1-201ENST00000326004 ZANQ9Y493 2812 aa1.5□□□□□ -2.17
HMGB1-201ENST00000326004 TNRC6AQ8NDV7 1962 aaKnown RBP1.5□□□□□ -2.17
HMGB1-201ENST00000326004 NUP210Q8TEM1 1887 aaPredicted RBP1.5□□□□□ -2.17
HMGB1-201ENST00000326004 KIAA1109Q2LD37 5005 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 SVEP1Q4LDE5 3571 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 ARHGAP32A7KAX9 2087 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 MYH6P13533 1939 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 TRBV20OR9-2A0A075B6H5 130 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 A0A0J9YW62 118 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 LCE6AA0A183 80 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 MDFIC2A0A1B0GVS7 189 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 A0A1B0GW54 56 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 GRIFINA4D1Z8 144 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 DPRXA6NFQ7 191 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 TMEM212A6NML5 194 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 C17orf51A8MQB3 221 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 H3BRM9 83 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 KLF7O75840 302 aaPredicted RBP1.49□□□□□ -2.17
HMGB1-201ENST00000326004 IFITM1P13164 125 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 CCL4P13236 92 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 HIST1H1DP16402 221 aaKnown RBP1.49□□□□□ -2.17
HMGB1-201ENST00000326004 EVI2AP22794 236 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 PPIBP23284 216 aaKnown RBP1.49□□□□□ -2.17
HMGB1-201ENST00000326004 BLVRBP30043 206 aaPredicted RBP1.49□□□□□ -2.17
HMGB1-201ENST00000326004 SRIP30626 198 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 RPL27AP46776 148 aaKnown RBP1.49□□□□□ -2.17
HMGB1-201ENST00000326004 SNRPGP62308 76 aaKnown RBP1.49□□□□□ -2.17
HMGB1-201ENST00000326004 RPL30P62888 115 aaKnown RBP1.49□□□□□ -2.17
HMGB1-201ENST00000326004 CCL20P78556 96 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 ZNF117Q03924 483 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 SLC38A11Q08AI6 406 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 KLRD1Q13241 179 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 DIAPH2-AS1Q14236 149 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 WFDC2Q14508 124 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 CST6Q15828 149 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 C12orf74Q32Q52 190 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 NCBP2-AS2Q69YL0 99 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 Q6AWC8 147 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 Q6ZS49 121 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 C2orf91Q6ZV80 131 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 SSX8Q7RTT4 187 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 COMMD6Q7Z4G1 85 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 BAGE3Q86Y29 109 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 BAGE2Q86Y30 109 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 MSRB3Q8IXL7 192 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 EXOC3-AS1Q8N2X6 119 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 C10orf111Q8N326 155 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 SIGLECL1Q8N7X8 197 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 OR5D14Q8NGL3 314 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 OR2T10Q8NGZ9 312 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 OR5AK2Q8NH90 309 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 FAM213BQ8TBF2 198 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 MBD3L1Q8WWY6 194 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 POP5Q969H6 163 aaKnown RBP1.49□□□□□ -2.17
HMGB1-201ENST00000326004 C20orf78Q9BR46 151 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 TTTY13Q9BZ97 58 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 OR2H1Q9GZK4 316 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 COMMD5Q9GZQ3 224 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 TMEM222Q9H0R3 208 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 CST11Q9H112 138 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 TMEM133Q9H2Q1 129 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 BANF2Q9H503 90 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 ST20Q9HBF5 79 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 SPANXA1Q9NS26 97 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 TVP23BQ9NYZ1 205 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 TP73-AS1Q9UF72 201 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 NOP16Q9Y3C1 178 aaKnown RBP1.49□□□□□ -2.17
HMGB1-201ENST00000326004 MED31Q9Y3C7 131 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 OBSL1O75147 1896 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 HEATR5AQ86XA9 2040 aa1.49□□□□□ -2.17
HMGB1-201ENST00000326004 SCN8AQ9UQD0 1980 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 MYH4Q9Y623 1939 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 MYO5AQ9Y4I1 1855 aaKnown RBP1.48□□□□□ -2.17
HMGB1-201ENST00000326004 KNL1Q8NG31 2342 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 IGLV10-54A0A075B6I4 117 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 TRBV6-7A0A0A0MS04 114 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 BORCS7-ASMTA0A0B4J1R7 106 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 IGHV3-15A0A0B4J1V0 119 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 FAM236AA0A1B0GUQ0 79 aa1.48□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms