RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 PRB2P02812 416 aaPredicted RBP13.25□□□□□ -0.29
SYNPO-201ENST00000307662 IGHV4-38-2P0DP08 117 aa13.25□□□□□ -0.29
SYNPO-201ENST00000307662 CXCL5P42830 114 aa13.25□□□□□ -0.29
SYNPO-201ENST00000307662 NCKAP5O14513 1909 aa13.24□□□□□ -0.29
SYNPO-201ENST00000307662 DEFB1P60022 68 aa13.24□□□□□ -0.29
SYNPO-201ENST00000307662 NEXN-AS1Q8NBZ9 246 aa13.24□□□□□ -0.29
SYNPO-201ENST00000307662 FANCD2OSQ96PS1 177 aa13.24□□□□□ -0.29
SYNPO-201ENST00000307662 MED13LQ71F56 2210 aa13.23□□□□□ -0.29
SYNPO-201ENST00000307662 Q8N7P7 452 aa13.23□□□□□ -0.29
SYNPO-201ENST00000307662 PDE6GP18545 87 aa13.22□□□□□ -0.29
SYNPO-201ENST00000307662 KIF26AQ9ULI4 1882 aaPredicted RBP13.22□□□□□ -0.29
SYNPO-201ENST00000307662 CRIP3Q6Q6R5 217 aa13.22□□□□□ -0.29
SYNPO-201ENST00000307662 BRK1Q8WUW1 75 aa13.22□□□□□ -0.29
SYNPO-201ENST00000307662 MED13Q9UHV7 2174 aa13.22□□□□□ -0.29
SYNPO-201ENST00000307662 PROP1O75360 226 aa13.21□□□□□ -0.29
SYNPO-201ENST00000307662 GPHB5Q86YW7 130 aa13.21□□□□□ -0.29
SYNPO-201ENST00000307662 IGHV4OR15-8A0A075B7B6 117 aa13.21□□□□□ -0.29
SYNPO-201ENST00000307662 A0A087WW49 117 aa13.21□□□□□ -0.29
SYNPO-201ENST00000307662 HIST2H2BDQ6DRA6 164 aa13.21□□□□□ -0.29
SYNPO-201ENST00000307662 CGB3P0DN86 165 aa13.21□□□□□ -0.3
SYNPO-201ENST00000307662 HIGD2BQ4VC39 106 aa13.21□□□□□ -0.3
SYNPO-201ENST00000307662 DIRC1Q969H9 104 aa13.21□□□□□ -0.3
SYNPO-201ENST00000307662 IGHV4-61A0A0C4DH41 118 aa13.21□□□□□ -0.3
SYNPO-201ENST00000307662 ZGRF1Q86YA3 2104 aa13.21□□□□□ -0.3
SYNPO-201ENST00000307662 A0A1W2PNU3 283 aaPredicted RBP13.2□□□□□ -0.3
SYNPO-201ENST00000307662 TRAV23DV6A0A075B6W5 121 aa13.2□□□□□ -0.3
SYNPO-201ENST00000307662 CEMP1Q6PRD7 247 aaPredicted RBP13.2□□□□□ -0.3
SYNPO-201ENST00000307662 ARHGAP21Q5T5U3 1957 aa13.2□□□□□ -0.3
SYNPO-201ENST00000307662 NDUFA1O15239 70 aa13.2□□□□□ -0.3
SYNPO-201ENST00000307662 IGKV2D-26A0A0A0MRZ7 120 aa13.2□□□□□ -0.3
SYNPO-201ENST00000307662 UPK3BQ9BT76 320 aa13.2□□□□□ -0.3
SYNPO-201ENST00000307662 MAPKAPK5-AS1Q8N8E1 139 aa13.19□□□□□ -0.3
SYNPO-201ENST00000307662 SEM1Q6ZVN7 128 aa13.19□□□□□ -0.3
SYNPO-201ENST00000307662 C3orf22Q8N5N4 141 aa13.19□□□□□ -0.3
SYNPO-201ENST00000307662 NDUFB1O75438 58 aa13.19□□□□□ -0.3
SYNPO-201ENST00000307662 EIF4EBP1Q13541 118 aaPredicted RBP13.19□□□□□ -0.3
SYNPO-201ENST00000307662 A0A0J9YX75 114 aa13.18□□□□□ -0.3
SYNPO-201ENST00000307662 TNRC6BQ9UPQ9 1833 aaKnown RBP13.18□□□□□ -0.3
SYNPO-201ENST00000307662 CHKB-CPT1BH3BT56 60 aa13.18□□□□□ -0.3
SYNPO-201ENST00000307662 UNQ9165/PRO28630Q6UXU0 137 aa13.18□□□□□ -0.3
SYNPO-201ENST00000307662 U3KQK5 164 aa13.18□□□□□ -0.3
SYNPO-201ENST00000307662 HHLA3Q9XRX5 114 aa13.18□□□□□ -0.3
SYNPO-201ENST00000307662 MSMPQ1L6U9 139 aa13.17□□□□□ -0.3
SYNPO-201ENST00000307662 LINC00574Q9H8X3 128 aa13.17□□□□□ -0.3
SYNPO-201ENST00000307662 P0DMU3 169 aa13.17□□□□□ -0.3
SYNPO-201ENST00000307662 FAM231AP0DMU4 169 aa13.17□□□□□ -0.3
SYNPO-201ENST00000307662 FAM231CP0DMU5 169 aa13.17□□□□□ -0.3
SYNPO-201ENST00000307662 SDIM1Q6ZPB5 146 aa13.17□□□□□ -0.3
SYNPO-201ENST00000307662 TRBV12-3P01733 135 aa13.17□□□□□ -0.3
SYNPO-201ENST00000307662 IGHV3-30P01768 117 aa13.17□□□□□ -0.3
SYNPO-201ENST00000307662 IGHV3-33P01772 117 aa13.17□□□□□ -0.3
SYNPO-201ENST00000307662 IGHV3-30-5P0DP03 117 aa13.17□□□□□ -0.3
SYNPO-201ENST00000307662 DYSFO75923 2080 aa13.17□□□□□ -0.3
SYNPO-201ENST00000307662 CGB7P0DN87 165 aa13.17□□□□□ -0.3
SYNPO-201ENST00000307662 SPATA25Q9BR10 227 aa13.17□□□□□ -0.3
SYNPO-201ENST00000307662 TMEM223A0PJW6 202 aa13.16□□□□□ -0.3
SYNPO-201ENST00000307662 SPAG11BQ08648 103 aa13.16□□□□□ -0.3
SYNPO-201ENST00000307662 C20orf197Q8N268 126 aa13.15□□□□□ -0.3
SYNPO-201ENST00000307662 TIRAPP58753 221 aa13.15□□□□□ -0.3
SYNPO-201ENST00000307662 C2orf91Q6ZV80 131 aa13.15□□□□□ -0.3
SYNPO-201ENST00000307662 SPART-AS1P0CW21 52 aa13.15□□□□□ -0.3
SYNPO-201ENST00000307662 ZFP36P26651 326 aaKnown RBP13.15□□□□□ -0.3
SYNPO-201ENST00000307662 TRBV10-1A0A0K0K1A3 114 aa13.15□□□□□ -0.3
SYNPO-201ENST00000307662 TMEM89A2RUT3 159 aa13.15□□□□□ -0.3
SYNPO-201ENST00000307662 TRBV30A0A0K0K1B3 111 aa13.14□□□□□ -0.31
SYNPO-201ENST00000307662 FAM236DA0A1B0GTK5 79 aa13.14□□□□□ -0.31
SYNPO-201ENST00000307662 CLPSL1A2RUU4 121 aa13.14□□□□□ -0.31
SYNPO-201ENST00000307662 FAM236CP0DP71 79 aa13.14□□□□□ -0.31
SYNPO-201ENST00000307662 LTBP2Q14767 1821 aa13.14□□□□□ -0.31
SYNPO-201ENST00000307662 ZFHX2Q9C0A1 2572 aaPredicted RBP13.14□□□□□ -0.31
SYNPO-201ENST00000307662 NACAE9PAV3 2078 aa13.14□□□□□ -0.31
SYNPO-201ENST00000307662 TRIAP1O43715 76 aa13.14□□□□□ -0.31
SYNPO-201ENST00000307662 ZNF22P17026 224 aaPredicted RBP13.14□□□□□ -0.31
SYNPO-201ENST00000307662 CCDC140Q96MF4 163 aa13.14□□□□□ -0.31
SYNPO-201ENST00000307662 C2orf16Q68DN1 1984 aa13.13□□□□□ -0.31
SYNPO-201ENST00000307662 IGHV4-30-2A0A087WSY4 118 aa13.13□□□□□ -0.31
SYNPO-201ENST00000307662 ZNF106Q9H2Y7 1883 aaKnown RBP13.13□□□□□ -0.31
SYNPO-201ENST00000307662 ATP5EP2Q5VTU8 51 aa13.12□□□□□ -0.31
SYNPO-201ENST00000307662 C1orf229Q6ZS94 237 aaPredicted RBP13.12□□□□□ -0.31
SYNPO-201ENST00000307662 TTC28Q96AY4 2481 aa13.12□□□□□ -0.31
SYNPO-201ENST00000307662 SIRPDQ9H106 197 aa13.12□□□□□ -0.31
SYNPO-201ENST00000307662 PKIGQ9Y2B9 76 aa13.12□□□□□ -0.31
SYNPO-201ENST00000307662 COX7BP24311 80 aa13.12□□□□□ -0.31
SYNPO-201ENST00000307662 CRIP1P50238 77 aa13.12□□□□□ -0.31
SYNPO-201ENST00000307662 RNF185Q96GF1 192 aa13.12□□□□□ -0.31
SYNPO-201ENST00000307662 MYCNOSP40205 109 aa13.11□□□□□ -0.31
SYNPO-201ENST00000307662 C9orf66Q5T8R8 295 aa13.11□□□□□ -0.31
SYNPO-201ENST00000307662 TMEM263Q8WUH6 116 aaKnown RBP13.11□□□□□ -0.31
SYNPO-201ENST00000307662 ESM1Q9NQ30 184 aa13.11□□□□□ -0.31
SYNPO-201ENST00000307662 ODF3Q96PU9 254 aa13.1□□□□□ -0.31
SYNPO-201ENST00000307662 FAM110AQ9BQ89 295 aa13.1□□□□□ -0.31
SYNPO-201ENST00000307662 C10orf105Q8TEF2 133 aa13.1□□□□□ -0.31
SYNPO-201ENST00000307662 ADORA2A-AS1P86434 159 aa13.1□□□□□ -0.31
SYNPO-201ENST00000307662 IGLV4-3A0A075B6K6 122 aa13.09□□□□□ -0.31
SYNPO-201ENST00000307662 MRPS12O15235 138 aaKnown RBP13.09□□□□□ -0.31
SYNPO-201ENST00000307662 LINC00308Q8TCZ7 52 aa13.09□□□□□ -0.31
SYNPO-201ENST00000307662 CFAP126Q5VTH2 177 aa13.09□□□□□ -0.31
SYNPO-201ENST00000307662 CDKN2A-AS1Q9UH64 79 aa13.09□□□□□ -0.31
SYNPO-201ENST00000307662 BPY2O14599 106 aa13.08□□□□□ -0.32
SYNPO-201ENST00000307662 WISP2O76076 250 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms