RNA–Protein interactions for RNA: ENST00000278833.3

ROM1-201, Transcript of retinal outer segment membrane protein 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene ROM1, Length 1,878 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ROM1-201ENST00000278833 SMR3AQ99954 134 aa18.52■□□□□ 0.56
ROM1-201ENST00000278833 NAA38Q9BRA0 125 aaKnown RBP18.52■□□□□ 0.56
ROM1-201ENST00000278833 MDFICQ9P1T7 246 aa18.52■□□□□ 0.56
ROM1-201ENST00000278833 TEP1Q99973 2627 aaKnown RBP18.52■□□□□ 0.56
ROM1-201ENST00000278833 MORN3Q6PF18 240 aaPredicted RBP18.52■□□□□ 0.55
ROM1-201ENST00000278833 HIST1H4GQ99525 98 aa18.51■□□□□ 0.55
ROM1-201ENST00000278833 C12orf74Q32Q52 190 aa18.5■□□□□ 0.55
ROM1-201ENST00000278833 MTORP42345 2549 aa18.5■□□□□ 0.55
ROM1-201ENST00000278833 TRAV12-2A0A075B6T6 113 aa18.5■□□□□ 0.55
ROM1-201ENST00000278833 F5H697 171 aa18.5■□□□□ 0.55
ROM1-201ENST00000278833 K7ERJ3 54 aa18.5■□□□□ 0.55
ROM1-201ENST00000278833 HERVK_113P61574 105 aa18.5■□□□□ 0.55
ROM1-201ENST00000278833 SPINK13Q1W4C9 94 aa18.5■□□□□ 0.55
ROM1-201ENST00000278833 WFDC12Q8WWY7 111 aa18.5■□□□□ 0.55
ROM1-201ENST00000278833 IGLL5B9A064 214 aa18.49■□□□□ 0.55
ROM1-201ENST00000278833 C11orf86A6NJI1 115 aa18.48■□□□□ 0.55
ROM1-201ENST00000278833 ZNF876PQ49A33 203 aa18.48■□□□□ 0.55
ROM1-201ENST00000278833 PIK3CD-AS1Q5SR53 167 aa18.48■□□□□ 0.55
ROM1-201ENST00000278833 KRTAP1-1Q07627 177 aa18.48■□□□□ 0.55
ROM1-201ENST00000278833 TCTEX1D4Q5JR98 221 aa18.47■□□□□ 0.55
ROM1-201ENST00000278833 HOXA3O43365 443 aaPredicted RBP18.46■□□□□ 0.55
ROM1-201ENST00000278833 ZNF56Q15929 161 aa18.46■□□□□ 0.55
ROM1-201ENST00000278833 PTH2Q96A98 100 aa18.46■□□□□ 0.55
ROM1-201ENST00000278833 NFE4Q86UQ8 179 aa18.46■□□□□ 0.54
ROM1-201ENST00000278833 SONP18583 2426 aaKnown RBP18.45■□□□□ 0.54
ROM1-201ENST00000278833 ZNF815PA8K554 130 aa18.45■□□□□ 0.54
ROM1-201ENST00000278833 SPAG8Q99932 426 aaPredicted RBP18.45■□□□□ 0.54
ROM1-201ENST00000278833 LY6G6DO95868 133 aa18.44■□□□□ 0.54
ROM1-201ENST00000278833 IGKV3-20P01619 116 aa18.44■□□□□ 0.54
ROM1-201ENST00000278833 RPL39P62891 51 aaKnown RBP18.44■□□□□ 0.54
ROM1-201ENST00000278833 FAM74A4Q5TZK3 123 aa18.44■□□□□ 0.54
ROM1-201ENST00000278833 ZNF479Q96JC4 524 aa18.43■□□□□ 0.54
ROM1-201ENST00000278833 RNF151Q2KHN1 245 aa18.43■□□□□ 0.54
ROM1-201ENST00000278833 RRN3P1Q2M238 152 aa18.43■□□□□ 0.54
ROM1-201ENST00000278833 TMEM238LA0A1B0GVL6 79 aa18.42■□□□□ 0.54
ROM1-201ENST00000278833 A6NJY4 79 aa18.42■□□□□ 0.54
ROM1-201ENST00000278833 PCP4P48539 62 aa18.42■□□□□ 0.54
ROM1-201ENST00000278833 LINC00467Q9BRT7 94 aa18.42■□□□□ 0.54
ROM1-201ENST00000278833 SPANXB1Q9NS25 103 aaPredicted RBP18.42■□□□□ 0.54
ROM1-201ENST00000278833 PEMTQ9UBM1 199 aa18.42■□□□□ 0.54
ROM1-201ENST00000278833 HIVEP2P31629 2446 aa18.42■□□□□ 0.54
ROM1-201ENST00000278833 I3L3M4 83 aa18.41■□□□□ 0.54
ROM1-201ENST00000278833 C4orf3Q8WVX3 66 aa18.41■□□□□ 0.54
ROM1-201ENST00000278833 C20orf203Q8NBC4 194 aa18.41■□□□□ 0.54
ROM1-201ENST00000278833 AGRNO00468 2067 aa18.4■□□□□ 0.54
ROM1-201ENST00000278833 RBMY1A1P0DJD3 496 aaKnown RBP18.4■□□□□ 0.54
ROM1-201ENST00000278833 RBMY1CP0DJD4 496 aa18.4■□□□□ 0.54
ROM1-201ENST00000278833 RBMY1FQ15415 496 aaKnown RBP18.4■□□□□ 0.54
ROM1-201ENST00000278833 TMEM86BQ8N661 226 aa18.4■□□□□ 0.54
ROM1-201ENST00000278833 DUX5Q96PT3 197 aa18.4■□□□□ 0.54
ROM1-201ENST00000278833 G3V4G9 280 aa18.39■□□□□ 0.54
ROM1-201ENST00000278833 H3BMM0 161 aa18.39■□□□□ 0.54
ROM1-201ENST00000278833 UBE2D1P51668 147 aa18.39■□□□□ 0.54
ROM1-201ENST00000278833 P0DMU3 169 aa18.39■□□□□ 0.53
ROM1-201ENST00000278833 FAM231AP0DMU4 169 aa18.39■□□□□ 0.53
ROM1-201ENST00000278833 FAM231CP0DMU5 169 aa18.39■□□□□ 0.53
ROM1-201ENST00000278833 SLURP1P55000 103 aa18.39■□□□□ 0.53
ROM1-201ENST00000278833 SCGB2A2Q13296 93 aa18.39■□□□□ 0.53
ROM1-201ENST00000278833 VPS25Q9BRG1 176 aa18.39■□□□□ 0.53
ROM1-201ENST00000278833 CD300EQ496F6 205 aaPredicted RBP18.38■□□□□ 0.53
ROM1-201ENST00000278833 NSD1Q96L73 2696 aaPredicted RBP18.38■□□□□ 0.53
ROM1-201ENST00000278833 ANK3Q12955 4377 aaKnown RBP18.37■□□□□ 0.53
ROM1-201ENST00000278833 SAP30O75446 220 aa18.37■□□□□ 0.53
ROM1-201ENST00000278833 CRYBA4P53673 196 aa18.37■□□□□ 0.53
ROM1-201ENST00000278833 ZNRF2Q8NHG8 242 aa18.37■□□□□ 0.53
ROM1-201ENST00000278833 PLEKHB2Q96CS7 222 aa18.37■□□□□ 0.53
ROM1-201ENST00000278833 A0A0J9YY99 117 aa18.37■□□□□ 0.53
ROM1-201ENST00000278833 CLUHP3Q96NS8 147 aa18.37■□□□□ 0.53
ROM1-201ENST00000278833 F8W1H4 67 aa18.36■□□□□ 0.53
ROM1-201ENST00000278833 DEFB131AP59861 70 aa18.36■□□□□ 0.53
ROM1-201ENST00000278833 SCGB1D4Q6XE38 83 aa18.36■□□□□ 0.53
ROM1-201ENST00000278833 YAE1D1Q9NRH1 226 aa18.36■□□□□ 0.53
ROM1-201ENST00000278833 PYGO1Q9Y3Y4 419 aa18.36■□□□□ 0.53
ROM1-201ENST00000278833 A8MWV9 139 aa18.35■□□□□ 0.53
ROM1-201ENST00000278833 RBMY1BA6NDE4 496 aaKnown RBP18.35■□□□□ 0.53
ROM1-201ENST00000278833 RBMY1EA6NEQ0 496 aaKnown RBP18.35■□□□□ 0.53
ROM1-201ENST00000278833 KNCNA6PVL3 124 aa18.35■□□□□ 0.53
ROM1-201ENST00000278833 RBMY1DP0C7P1 496 aaKnown RBP18.35■□□□□ 0.53
ROM1-201ENST00000278833 AMELXQ99217 191 aa18.35■□□□□ 0.53
ROM1-201ENST00000278833 M0R2P5 195 aa18.33■□□□□ 0.53
ROM1-201ENST00000278833 ZNF415Q09FC8 603 aa18.33■□□□□ 0.53
ROM1-201ENST00000278833 C18orf65Q6ZTR6 163 aa18.33■□□□□ 0.53
ROM1-201ENST00000278833 TEX29Q8N6K0 151 aa18.33■□□□□ 0.53
ROM1-201ENST00000278833 DLX4Q92988 240 aaPredicted RBP18.33■□□□□ 0.53
ROM1-201ENST00000278833 FN1P02751 2386 aaKnown RBP18.32■□□□□ 0.52
ROM1-201ENST00000278833 TMEM223A0PJW6 202 aa18.32■□□□□ 0.52
ROM1-201ENST00000278833 TSPEAR-AS2P59090 65 aa18.32■□□□□ 0.52
ROM1-201ENST00000278833 TMEM61Q8N0U2 210 aa18.32■□□□□ 0.52
ROM1-201ENST00000278833 SLC25A29Q8N8R3 303 aa18.32■□□□□ 0.52
ROM1-201ENST00000278833 NIPBLQ6KC79 2804 aaeCLIP18.32■□□□□ 0.52
ROM1-201ENST00000278833 IGLV4-3A0A075B6K6 122 aa18.31■□□□□ 0.52
ROM1-201ENST00000278833 LEPROTO15243 131 aa18.31■□□□□ 0.52
ROM1-201ENST00000278833 DEFB136Q30KP8 78 aa18.31■□□□□ 0.52
ROM1-201ENST00000278833 TMEM170BQ5T4T1 132 aa18.31■□□□□ 0.52
ROM1-201ENST00000278833 KLHL30-AS1Q8NEE0 82 aa18.31■□□□□ 0.52
ROM1-201ENST00000278833 MAP6D1Q9H9H5 199 aa18.31■□□□□ 0.52
ROM1-201ENST00000278833 J3QQQ9 107 aa18.3■□□□□ 0.52
ROM1-201ENST00000278833 EMP1P54849 157 aa18.29■□□□□ 0.52
ROM1-201ENST00000278833 SRSF9Q13242 221 aaKnown RBP eCLIP18.29■□□□□ 0.52
ROM1-201ENST00000278833 RHODO00212 210 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 138.8 ms