RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 TIRAPP58753 221 aa9.78□□□□□ -0.84
USP40-201ENST00000251722 NDUFA1O15239 70 aa9.78□□□□□ -0.84
USP40-201ENST00000251722 EBI3Q14213 229 aa9.78□□□□□ -0.84
USP40-201ENST00000251722 SUMO4Q6EEV6 95 aa9.78□□□□□ -0.84
USP40-201ENST00000251722 PRO0255Q9UI72 69 aa9.78□□□□□ -0.84
USP40-201ENST00000251722 PCNX2A6NKB5 2137 aa9.77□□□□□ -0.84
USP40-201ENST00000251722 FUSP35637 526 aaKnown RBP eCLIP9.77□□□□□ -0.84
USP40-201ENST00000251722 FANCD2OSQ96PS1 177 aa9.77□□□□□ -0.84
USP40-201ENST00000251722 MED12Q93074 2177 aa9.77□□□□□ -0.85
USP40-201ENST00000251722 TECTAO75443 2155 aa9.77□□□□□ -0.85
USP40-201ENST00000251722 HILS1P60008 231 aa9.77□□□□□ -0.85
USP40-201ENST00000251722 ZFP2Q6ZN57 461 aa9.77□□□□□ -0.85
USP40-201ENST00000251722 C17orf77Q96MU5 243 aa9.77□□□□□ -0.85
USP40-201ENST00000251722 OBSL1O75147 1896 aa9.77□□□□□ -0.85
USP40-201ENST00000251722 ETDCA0A1B0GVM5 59 aa9.77□□□□□ -0.85
USP40-201ENST00000251722 TRBV12-3P01733 135 aa9.77□□□□□ -0.85
USP40-201ENST00000251722 A0A0J9YX75 114 aa9.76□□□□□ -0.85
USP40-201ENST00000251722 XCL1P47992 114 aa9.76□□□□□ -0.85
USP40-201ENST00000251722 C11orf71Q6IPW1 123 aa9.76□□□□□ -0.85
USP40-201ENST00000251722 NCKAP5O14513 1909 aa9.76□□□□□ -0.85
USP40-201ENST00000251722 DENND4CQ5VZ89 1909 aa9.76□□□□□ -0.85
USP40-201ENST00000251722 NXPH4O95158 308 aa9.76□□□□□ -0.85
USP40-201ENST00000251722 P0DMU3 169 aa9.75□□□□□ -0.85
USP40-201ENST00000251722 FAM231AP0DMU4 169 aa9.75□□□□□ -0.85
USP40-201ENST00000251722 FAM231CP0DMU5 169 aa9.75□□□□□ -0.85
USP40-201ENST00000251722 A0A096LPF7 62 aa9.75□□□□□ -0.85
USP40-201ENST00000251722 ZNF106Q9H2Y7 1883 aaKnown RBP9.75□□□□□ -0.85
USP40-201ENST00000251722 TEX49A0A1B0GTD5 131 aa9.75□□□□□ -0.85
USP40-201ENST00000251722 H7C423 109 aa9.75□□□□□ -0.85
USP40-201ENST00000251722 MP68P56378 58 aa9.75□□□□□ -0.85
USP40-201ENST00000251722 DEFB104AQ8WTQ1 72 aa9.75□□□□□ -0.85
USP40-201ENST00000251722 MPDZO75970 2070 aa9.74□□□□□ -0.85
USP40-201ENST00000251722 RITA1Q96K30 269 aa9.74□□□□□ -0.85
USP40-201ENST00000251722 CACNA1HO95180 2353 aa9.74□□□□□ -0.85
USP40-201ENST00000251722 Q6ZQT7 251 aa9.74□□□□□ -0.85
USP40-201ENST00000251722 MAP6D1Q9H9H5 199 aa9.74□□□□□ -0.85
USP40-201ENST00000251722 PATE2Q6UY27 113 aa9.74□□□□□ -0.85
USP40-201ENST00000251722 MBD6Q96DN6 1003 aa9.74□□□□□ -0.85
USP40-201ENST00000251722 TIMM17AQ99595 171 aa9.74□□□□□ -0.85
USP40-201ENST00000251722 C19orf84I3L1E1 186 aa9.73□□□□□ -0.85
USP40-201ENST00000251722 Q9HAA7 133 aa9.73□□□□□ -0.85
USP40-201ENST00000251722 C11orf45Q8TAV5 145 aa9.73□□□□□ -0.85
USP40-201ENST00000251722 AKAP6Q13023 2319 aa9.73□□□□□ -0.85
USP40-201ENST00000251722 USF3Q68DE3 2245 aa9.73□□□□□ -0.85
USP40-201ENST00000251722 KIAA1549LQ6ZVL6 1849 aa9.73□□□□□ -0.85
USP40-201ENST00000251722 DOCK11Q5JSL3 2073 aa9.73□□□□□ -0.85
USP40-201ENST00000251722 COX7B2Q8TF08 81 aa9.72□□□□□ -0.85
USP40-201ENST00000251722 SPTBN2O15020 2390 aa9.72□□□□□ -0.85
USP40-201ENST00000251722 FAM167A-AS1Q96KT0 104 aa9.72□□□□□ -0.85
USP40-201ENST00000251722 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.72□□□□□ -0.85
USP40-201ENST00000251722 IGKV2-29A2NJV5 120 aaPredicted RBP9.72□□□□□ -0.85
USP40-201ENST00000251722 KIAA2026Q5HYC2 2103 aa9.72□□□□□ -0.85
USP40-201ENST00000251722 MIFP14174 115 aa9.71□□□□□ -0.85
USP40-201ENST00000251722 DEFB135Q30KP9 77 aa9.71□□□□□ -0.85
USP40-201ENST00000251722 TMEM61Q8N0U2 210 aa9.71□□□□□ -0.85
USP40-201ENST00000251722 Q9H8V8 135 aa9.71□□□□□ -0.85
USP40-201ENST00000251722 DOCK9Q9BZ29 2069 aa9.71□□□□□ -0.85
USP40-201ENST00000251722 LOC107984640A0A0U1RRK4 108 aa9.71□□□□□ -0.86
USP40-201ENST00000251722 USP17L23D6RBM5 183 aa9.71□□□□□ -0.86
USP40-201ENST00000251722 MSMPQ1L6U9 139 aa9.71□□□□□ -0.86
USP40-201ENST00000251722 C2orf91Q6ZV80 131 aa9.71□□□□□ -0.86
USP40-201ENST00000251722 TRAV23DV6A0A075B6W5 121 aa9.71□□□□□ -0.86
USP40-201ENST00000251722 PSMG3-AS1Q96PY0 264 aa9.7□□□□□ -0.86
USP40-201ENST00000251722 SPTBN1Q01082 2364 aaKnown RBP9.7□□□□□ -0.86
USP40-201ENST00000251722 UPK3BQ9BT76 320 aa9.7□□□□□ -0.86
USP40-201ENST00000251722 PDE6GP18545 87 aa9.7□□□□□ -0.86
USP40-201ENST00000251722 C10orf142B7Z368 130 aa9.7□□□□□ -0.86
USP40-201ENST00000251722 PLA2G2AP14555 144 aa9.69□□□□□ -0.86
USP40-201ENST00000251722 OXLD1Q5BKU9 147 aa9.69□□□□□ -0.86
USP40-201ENST00000251722 TP53TG3Q9ULZ0 132 aa9.69□□□□□ -0.86
USP40-201ENST00000251722 IGHV3-30P01768 117 aa9.69□□□□□ -0.86
USP40-201ENST00000251722 IGHV3-33P01772 117 aa9.69□□□□□ -0.86
USP40-201ENST00000251722 IGHV3-30-3P0DP02 117 aa9.69□□□□□ -0.86
USP40-201ENST00000251722 IGHV3-30-5P0DP03 117 aa9.69□□□□□ -0.86
USP40-201ENST00000251722 CLPSL2Q6UWE3 100 aa9.69□□□□□ -0.86
USP40-201ENST00000251722 SDIM1Q6ZPB5 146 aa9.69□□□□□ -0.86
USP40-201ENST00000251722 TTTY13Q9BZ97 58 aa9.69□□□□□ -0.86
USP40-201ENST00000251722 UBE2AP49459 152 aa9.69□□□□□ -0.86
USP40-201ENST00000251722 GTF3C1Q12789 2109 aa9.69□□□□□ -0.86
USP40-201ENST00000251722 P0C879 139 aa9.68□□□□□ -0.86
USP40-201ENST00000251722 DEFB114Q30KQ6 69 aa9.68□□□□□ -0.86
USP40-201ENST00000251722 C4orf48Q5BLP8 95 aa9.68□□□□□ -0.86
USP40-201ENST00000251722 MALRD1Q5VYJ5 2156 aa9.68□□□□□ -0.86
USP40-201ENST00000251722 PROP1O75360 226 aa9.68□□□□□ -0.86
USP40-201ENST00000251722 IGLV2-14P01704 120 aa9.68□□□□□ -0.86
USP40-201ENST00000251722 LY6LH3BQJ8 138 aa9.67□□□□□ -0.86
USP40-201ENST00000251722 MRPS12O15235 138 aaKnown RBP9.67□□□□□ -0.86
USP40-201ENST00000251722 TOMM6Q96B49 74 aa9.67□□□□□ -0.86
USP40-201ENST00000251722 K7EQG2 157 aa9.67□□□□□ -0.86
USP40-201ENST00000251722 CCDC140Q96MF4 163 aa9.67□□□□□ -0.86
USP40-201ENST00000251722 INAFM1C9JVW0 142 aa9.67□□□□□ -0.86
USP40-201ENST00000251722 NDUFS5O43920 106 aa9.67□□□□□ -0.86
USP40-201ENST00000251722 NFE4Q86UQ8 179 aa9.67□□□□□ -0.86
USP40-201ENST00000251722 KIR2DL5BQ8NHK3 375 aa9.67□□□□□ -0.86
USP40-201ENST00000251722 ADAMTS9Q9P2N4 1935 aa9.67□□□□□ -0.86
USP40-201ENST00000251722 PKDREJQ9NTG1 2253 aa9.67□□□□□ -0.86
USP40-201ENST00000251722 TRBV30A0A0K0K1B3 111 aa9.66□□□□□ -0.86
USP40-201ENST00000251722 C5orf38Q86SI9 138 aa9.66□□□□□ -0.86
USP40-201ENST00000251722 LINC01548A6NM66 108 aa9.66□□□□□ -0.86
USP40-201ENST00000251722 NDUFB1O75438 58 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms