RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 PPP1R17O96001 155 aa10.85□□□□□ -0.67
CCDC47-201ENST00000225726 ZNF876PQ49A33 203 aa10.85□□□□□ -0.67
CCDC47-201ENST00000225726 PTH2Q96A98 100 aa10.85□□□□□ -0.67
CCDC47-201ENST00000225726 TAX1BP3O14907 124 aa10.85□□□□□ -0.67
CCDC47-201ENST00000225726 C1orf158Q8N1D5 194 aa10.85□□□□□ -0.67
CCDC47-201ENST00000225726 A0A096LNJ9 63 aa10.84□□□□□ -0.67
CCDC47-201ENST00000225726 C20orf78Q9BR46 151 aa10.84□□□□□ -0.67
CCDC47-201ENST00000225726 TMEM70Q9BUB7 260 aa10.84□□□□□ -0.67
CCDC47-201ENST00000225726 A0A087WWL8 130 aa10.84□□□□□ -0.67
CCDC47-201ENST00000225726 PIK3CD-AS1Q5SR53 167 aa10.84□□□□□ -0.67
CCDC47-201ENST00000225726 MORN3Q6PF18 240 aaPredicted RBP10.84□□□□□ -0.67
CCDC47-201ENST00000225726 LINC00173Q6ZV60 143 aa10.84□□□□□ -0.67
CCDC47-201ENST00000225726 SPATA3Q8NHX4 192 aa10.84□□□□□ -0.67
CCDC47-201ENST00000225726 M0R2P5 195 aa10.83□□□□□ -0.67
CCDC47-201ENST00000225726 HBDP02042 147 aa10.83□□□□□ -0.67
CCDC47-201ENST00000225726 C11orf72Q8NBR9 251 aa10.83□□□□□ -0.67
CCDC47-201ENST00000225726 SPXQ9BT56 116 aa10.83□□□□□ -0.68
CCDC47-201ENST00000225726 CRYGDP07320 174 aa10.83□□□□□ -0.68
CCDC47-201ENST00000225726 SUMO4Q6EEV6 95 aa10.83□□□□□ -0.68
CCDC47-201ENST00000225726 SMIM2Q9BVW6 85 aa10.83□□□□□ -0.68
CCDC47-201ENST00000225726 PRM2P04554 102 aa10.82□□□□□ -0.68
CCDC47-201ENST00000225726 GTSCR1Q86UQ5 136 aa10.82□□□□□ -0.68
CCDC47-201ENST00000225726 RPL39LQ96EH5 51 aaKnown RBP10.82□□□□□ -0.68
CCDC47-201ENST00000225726 K7EMI3 77 aa10.82□□□□□ -0.68
CCDC47-201ENST00000225726 GIG44P09565 113 aaPredicted RBP10.82□□□□□ -0.68
CCDC47-201ENST00000225726 RPL35AP18077 110 aaKnown RBP10.82□□□□□ -0.68
CCDC47-201ENST00000225726 SUMO2P61956 95 aaKnown RBP10.82□□□□□ -0.68
CCDC47-201ENST00000225726 KRTAP24-1Q3LI83 254 aa10.82□□□□□ -0.68
CCDC47-201ENST00000225726 C1QTNF4Q9BXJ3 329 aa10.82□□□□□ -0.68
CCDC47-201ENST00000225726 MAP1LC3CQ9BXW4 147 aa10.82□□□□□ -0.68
CCDC47-201ENST00000225726 SYS1-DBNDD2H3BUS1 97 aa10.81□□□□□ -0.68
CCDC47-201ENST00000225726 FAM74A4Q5TZK3 123 aa10.81□□□□□ -0.68
CCDC47-201ENST00000225726 ZNF747Q9BV97 191 aa10.81□□□□□ -0.68
CCDC47-201ENST00000225726 F5H697 171 aa10.81□□□□□ -0.68
CCDC47-201ENST00000225726 FCER1GP30273 86 aa10.81□□□□□ -0.68
CCDC47-201ENST00000225726 BAHCC1Q9P281 2608 aa10.8□□□□□ -0.68
CCDC47-201ENST00000225726 IGHV3OR16-12A0A075B7B8 117 aa10.8□□□□□ -0.68
CCDC47-201ENST00000225726 ZNF56Q15929 161 aa10.8□□□□□ -0.68
CCDC47-201ENST00000225726 WFDC9Q8NEX5 89 aa10.8□□□□□ -0.68
CCDC47-201ENST00000225726 RPL32P62910 135 aaKnown RBP10.8□□□□□ -0.68
CCDC47-201ENST00000225726 LAGE3Q14657 143 aa10.8□□□□□ -0.68
CCDC47-201ENST00000225726 PET117Q6UWS5 81 aa10.8□□□□□ -0.68
CCDC47-201ENST00000225726 A8MWV9 139 aa10.79□□□□□ -0.68
CCDC47-201ENST00000225726 SPATA12Q7Z6I5 190 aa10.79□□□□□ -0.68
CCDC47-201ENST00000225726 IL17DQ8TAD2 202 aa10.79□□□□□ -0.68
CCDC47-201ENST00000225726 ST20Q9HBF5 79 aa10.79□□□□□ -0.68
CCDC47-201ENST00000225726 TEX48A0A1B0GUV7 120 aa10.79□□□□□ -0.68
CCDC47-201ENST00000225726 HERV-K104P63124 156 aa10.79□□□□□ -0.68
CCDC47-201ENST00000225726 BOD1L2Q8IYS8 172 aa10.79□□□□□ -0.68
CCDC47-201ENST00000225726 TMEM263Q8WUH6 116 aaKnown RBP10.78□□□□□ -0.68
CCDC47-201ENST00000225726 TRBV6-5A0A0K0K1A5 114 aa10.78□□□□□ -0.68
CCDC47-201ENST00000225726 CSNK1G2-AS1Q8NCQ2 148 aa10.78□□□□□ -0.68
CCDC47-201ENST00000225726 TMEM158Q8WZ71 300 aa10.78□□□□□ -0.68
CCDC47-201ENST00000225726 SIGMAR1Q99720 223 aa10.78□□□□□ -0.68
CCDC47-201ENST00000225726 M0QY20 66 aa10.77□□□□□ -0.68
CCDC47-201ENST00000225726 EDA2RQ9HAV5 297 aa10.77□□□□□ -0.68
CCDC47-201ENST00000225726 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.77□□□□□ -0.69
CCDC47-201ENST00000225726 ORMDL2Q53FV1 153 aa10.77□□□□□ -0.69
CCDC47-201ENST00000225726 UFSP1Q6NVU6 142 aa10.77□□□□□ -0.69
CCDC47-201ENST00000225726 GEMIN7Q9H840 131 aaKnown RBP10.77□□□□□ -0.69
CCDC47-201ENST00000225726 WIPF1O43516 503 aa10.76□□□□□ -0.69
CCDC47-201ENST00000225726 MRPL16Q9NX20 251 aaKnown RBP10.76□□□□□ -0.69
CCDC47-201ENST00000225726 IFI27L1Q96BM0 104 aa10.76□□□□□ -0.69
CCDC47-201ENST00000225726 POLR2KP53803 58 aaKnown RBP10.75□□□□□ -0.69
CCDC47-201ENST00000225726 BVES-AS1Q5T3Y7 98 aa10.75□□□□□ -0.69
CCDC47-201ENST00000225726 CFAP126Q5VTH2 177 aa10.75□□□□□ -0.69
CCDC47-201ENST00000225726 H7C1H1 209 aa10.75□□□□□ -0.69
CCDC47-201ENST00000225726 RHODO00212 210 aa10.75□□□□□ -0.69
CCDC47-201ENST00000225726 RS1O15537 224 aa10.75□□□□□ -0.69
CCDC47-201ENST00000225726 LINC01545Q5VT33 79 aa10.75□□□□□ -0.69
CCDC47-201ENST00000225726 C16orf74Q96GX8 76 aa10.75□□□□□ -0.69
CCDC47-201ENST00000225726 NIPBLQ6KC79 2804 aaeCLIP10.75□□□□□ -0.696e-8■□□□□ 9.1
CCDC47-201ENST00000225726 G3V4G9 280 aa10.74□□□□□ -0.69
CCDC47-201ENST00000225726 TEP1Q99973 2627 aaKnown RBP10.74□□□□□ -0.69
CCDC47-201ENST00000225726 TENM1Q9UKZ4 2725 aa10.74□□□□□ -0.69
CCDC47-201ENST00000225726 VCYO14598 125 aa10.74□□□□□ -0.69
CCDC47-201ENST00000225726 SMIM20Q8N5G0 67 aa10.74□□□□□ -0.69
CCDC47-201ENST00000225726 C3orf56Q8N813 242 aa10.74□□□□□ -0.69
CCDC47-201ENST00000225726 PRIMA1Q86XR5 153 aa10.74□□□□□ -0.69
CCDC47-201ENST00000225726 TRAV9-2A0A087WT02 112 aa10.73□□□□□ -0.69
CCDC47-201ENST00000225726 SDHAF1A6NFY7 115 aa10.73□□□□□ -0.69
CCDC47-201ENST00000225726 SFTA2Q6UW10 78 aa10.73□□□□□ -0.69
CCDC47-201ENST00000225726 SLC25A34Q6PIV7 304 aa10.73□□□□□ -0.69
CCDC47-201ENST00000225726 MRPL52Q86TS9 123 aaKnown RBP10.73□□□□□ -0.69
CCDC47-201ENST00000225726 SPCS1Q9Y6A9 102 aa10.73□□□□□ -0.69
CCDC47-201ENST00000225726 IGHV3-73A0A0B4J1V6 119 aa10.72□□□□□ -0.69
CCDC47-201ENST00000225726 ATP5LO75964 103 aa10.72□□□□□ -0.69
CCDC47-201ENST00000225726 DAZ2Q13117 558 aaKnown RBP10.72□□□□□ -0.69
CCDC47-201ENST00000225726 SH2D6Q7Z4S9 175 aa10.72□□□□□ -0.69
CCDC47-201ENST00000225726 TRBV27A0A0K0K1C4 114 aa10.72□□□□□ -0.69
CCDC47-201ENST00000225726 LGALS9BQ3B8N2 356 aa10.72□□□□□ -0.69
CCDC47-201ENST00000225726 LGALS9CQ6DKI2 356 aa10.72□□□□□ -0.69
CCDC47-201ENST00000225726 ZFP2Q6ZN57 461 aa10.72□□□□□ -0.69
CCDC47-201ENST00000225726 C18orf15Q96N68 181 aa10.72□□□□□ -0.69
CCDC47-201ENST00000225726 MRPS16Q9Y3D3 137 aaKnown RBP10.72□□□□□ -0.69
CCDC47-201ENST00000225726 TRGV1A0A0A0MS02 117 aa10.72□□□□□ -0.69
CCDC47-201ENST00000225726 B5MCH6 92 aa10.72□□□□□ -0.69
CCDC47-201ENST00000225726 RRN3P1Q2M238 152 aa10.72□□□□□ -0.69
CCDC47-201ENST00000225726 NEGR1Q7Z3B1 354 aa10.72□□□□□ -0.69
CCDC47-201ENST00000225726 TOMM6Q96B49 74 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 220.7 ms