RNA–Protein interactions for RNA: ENST00000642041.1

PHGDH-234, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 943 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-234ENST00000642041 AMTP48728 403 aa12.6□□□□□ -0.39
PHGDH-234ENST00000642041 JOSD1Q15040 202 aaPredicted RBP12.6□□□□□ -0.39
PHGDH-234ENST00000642041 IQCJQ1A5X6 159 aa12.6□□□□□ -0.39
PHGDH-234ENST00000642041 ODF3L2Q3SX64 289 aa12.6□□□□□ -0.39
PHGDH-234ENST00000642041 MRPL51Q4U2R6 128 aaKnown RBP12.6□□□□□ -0.39
PHGDH-234ENST00000642041 MUC21Q5SSG8 566 aa12.6□□□□□ -0.39
PHGDH-234ENST00000642041 TRPT1Q86TN4 253 aaKnown RBP12.6□□□□□ -0.39
PHGDH-234ENST00000642041 SBSPONQ8IVN8 264 aa12.6□□□□□ -0.39
PHGDH-234ENST00000642041 OR10AG1Q8NH19 301 aa12.6□□□□□ -0.39
PHGDH-234ENST00000642041 C9orf85Q96MD7 179 aa12.6□□□□□ -0.39
PHGDH-234ENST00000642041 AP5S1Q9NUS5 200 aa12.6□□□□□ -0.39
PHGDH-234ENST00000642041 KNCNA6PVL3 124 aa12.59□□□□□ -0.39
PHGDH-234ENST00000642041 RNASE3P12724 160 aaKnown RBP12.59□□□□□ -0.39
PHGDH-234ENST00000642041 ZNF415Q09FC8 603 aa12.59□□□□□ -0.39
PHGDH-234ENST00000642041 AMN1Q8IY45 258 aa12.59□□□□□ -0.39
PHGDH-234ENST00000642041 C20orf78Q9BR46 151 aa12.59□□□□□ -0.39
PHGDH-234ENST00000642041 IGHV3-16A0A0C4DH30 117 aa12.58□□□□□ -0.4
PHGDH-234ENST00000642041 CBY3A6NI87 242 aa12.58□□□□□ -0.4
PHGDH-234ENST00000642041 D6R8Y8 96 aa12.58□□□□□ -0.4
PHGDH-234ENST00000642041 M0R2Z0 102 aa12.58□□□□□ -0.4
PHGDH-234ENST00000642041 TCAPO15273 167 aa12.58□□□□□ -0.4
PHGDH-234ENST00000642041 CIDEAO60543 219 aa12.58□□□□□ -0.4
PHGDH-234ENST00000642041 IGKV3-20P01619 116 aa12.58□□□□□ -0.4
PHGDH-234ENST00000642041 DEFB1P60022 68 aa12.58□□□□□ -0.4
PHGDH-234ENST00000642041 S100A12P80511 92 aa12.58□□□□□ -0.4
PHGDH-234ENST00000642041 PDZD11Q5EBL8 140 aa12.58□□□□□ -0.4
PHGDH-234ENST00000642041 C12orf57Q99622 126 aa12.58□□□□□ -0.4
PHGDH-234ENST00000642041 ALMS1Q8TCU4 4167 aa12.58□□□□□ -0.4
PHGDH-234ENST00000642041 IFITM10A6NMD0 228 aa12.57□□□□□ -0.4
PHGDH-234ENST00000642041 GNRH2O43555 120 aa12.57□□□□□ -0.4
PHGDH-234ENST00000642041 PRB4P10163 310 aaPredicted RBP12.57□□□□□ -0.4
PHGDH-234ENST00000642041 POM121L12Q8N7R1 296 aa12.57□□□□□ -0.4
PHGDH-234ENST00000642041 ZMAT4Q9H898 229 aa12.57□□□□□ -0.4
PHGDH-234ENST00000642041 HSPB8Q9UJY1 196 aa12.57□□□□□ -0.4
PHGDH-234ENST00000642041 GOLT1BQ9Y3E0 138 aa12.57□□□□□ -0.4
PHGDH-234ENST00000642041 SELENOKQ9Y6D0 94 aa12.57□□□□□ -0.4
PHGDH-234ENST00000642041 SORL1Q92673 2214 aa12.56□□□□□ -0.4
PHGDH-234ENST00000642041 A8MWV9 139 aa12.56□□□□□ -0.4
PHGDH-234ENST00000642041 CRXO43186 299 aaPredicted RBP12.56□□□□□ -0.4
PHGDH-234ENST00000642041 RNASEKQ6P5S7 137 aaKnown RBP12.56□□□□□ -0.4
PHGDH-234ENST00000642041 Q8N1Y9 231 aa12.56□□□□□ -0.4
PHGDH-234ENST00000642041 LINC01587Q99440 93 aa12.56□□□□□ -0.4
PHGDH-234ENST00000642041 TRAV12-2A0A075B6T6 113 aa12.55□□□□□ -0.4
PHGDH-234ENST00000642041 H7C1H1 209 aa12.55□□□□□ -0.4
PHGDH-234ENST00000642041 EVI2AP22794 236 aa12.55□□□□□ -0.4
PHGDH-234ENST00000642041 RPL32P62910 135 aaKnown RBP12.55□□□□□ -0.4
PHGDH-234ENST00000642041 RNF185Q96GF1 192 aa12.55□□□□□ -0.4
PHGDH-234ENST00000642041 TMEM208Q9BTX3 173 aa12.55□□□□□ -0.4
PHGDH-234ENST00000642041 M0R2P5 195 aa12.54□□□□□ -0.4
PHGDH-234ENST00000642041 EDA2RQ9HAV5 297 aa12.54□□□□□ -0.4
PHGDH-234ENST00000642041 MSRB1Q9NZV6 116 aa12.54□□□□□ -0.4
PHGDH-234ENST00000642041 KIAA1109Q2LD37 5005 aa12.53□□□□□ -0.4
PHGDH-234ENST00000642041 LINC01546A6NGU7 62 aa12.53□□□□□ -0.4
PHGDH-234ENST00000642041 RHODO00212 210 aa12.53□□□□□ -0.4
PHGDH-234ENST00000642041 TNFRSF6BO95407 300 aa12.53□□□□□ -0.4
PHGDH-234ENST00000642041 C20orf202A1L168 122 aa12.52□□□□□ -0.41
PHGDH-234ENST00000642041 LEPROTL1O95214 131 aa12.52□□□□□ -0.41
PHGDH-234ENST00000642041 KIR3DS1Q14943 382 aa12.52□□□□□ -0.41
PHGDH-234ENST00000642041 PMCHL1Q16048 86 aa12.52□□□□□ -0.41
PHGDH-234ENST00000642041 Q8N8P6 123 aa12.52□□□□□ -0.41
PHGDH-234ENST00000642041 TIMM8BQ9Y5J9 83 aaPredicted RBP12.52□□□□□ -0.41
PHGDH-234ENST00000642041 LINC00310P59036 64 aa12.51□□□□□ -0.41
PHGDH-234ENST00000642041 SSTP61278 116 aa12.51□□□□□ -0.41
PHGDH-234ENST00000642041 LGALS9BQ3B8N2 356 aa12.51□□□□□ -0.41
PHGDH-234ENST00000642041 ZNF876PQ49A33 203 aa12.51□□□□□ -0.41
PHGDH-234ENST00000642041 PYY3Q5JQD4 70 aa12.51□□□□□ -0.41
PHGDH-234ENST00000642041 MUC21A0A0G2JKD1 596 aa12.5□□□□□ -0.41
PHGDH-234ENST00000642041 KIR2DL5BA0A0G2JN68 375 aa12.5□□□□□ -0.41
PHGDH-234ENST00000642041 KIR2DL5BA0A0G2JPC4 375 aa12.5□□□□□ -0.41
PHGDH-234ENST00000642041 MUC21A0A140T8X8 626 aa12.5□□□□□ -0.41
PHGDH-234ENST00000642041 NUPR1O60356 82 aa12.5□□□□□ -0.41
PHGDH-234ENST00000642041 ORMDL2Q53FV1 153 aa12.5□□□□□ -0.41
PHGDH-234ENST00000642041 KIR2DL5AQ8N109 375 aa12.5□□□□□ -0.41
PHGDH-234ENST00000642041 KIR2DL5BQ8NHK3 375 aa12.5□□□□□ -0.41
PHGDH-234ENST00000642041 MAP1LC3CQ9BXW4 147 aa12.5□□□□□ -0.41
PHGDH-234ENST00000642041 C19orf73Q9NVV2 129 aa12.5□□□□□ -0.41
PHGDH-234ENST00000642041 SMIM9A6NGZ8 99 aa12.49□□□□□ -0.41
PHGDH-234ENST00000642041 HBDP02042 147 aa12.49□□□□□ -0.41
PHGDH-234ENST00000642041 BTF3P20290 206 aaKnown RBP12.49□□□□□ -0.41
PHGDH-234ENST00000642041 C14orf178Q8N769 122 aaPredicted RBP12.49□□□□□ -0.41
PHGDH-234ENST00000642041 TMEM263Q8WUH6 116 aaKnown RBP12.49□□□□□ -0.41
PHGDH-234ENST00000642041 NIT2Q9NQR4 276 aa12.49□□□□□ -0.41
PHGDH-234ENST00000642041 SCGB1D1O95968 90 aa12.48□□□□□ -0.41
PHGDH-234ENST00000642041 NPYP01303 97 aa12.48□□□□□ -0.41
PHGDH-234ENST00000642041 Q6ZQT7 251 aa12.48□□□□□ -0.41
PHGDH-234ENST00000642041 C16orf74Q96GX8 76 aa12.48□□□□□ -0.41
PHGDH-234ENST00000642041 TMEM70Q9BUB7 260 aa12.48□□□□□ -0.41
PHGDH-234ENST00000642041 CSTL1Q9H114 145 aa12.48□□□□□ -0.41
PHGDH-234ENST00000642041 TRBV6-5A0A0K0K1A5 114 aa12.47□□□□□ -0.41
PHGDH-234ENST00000642041 IFI27P40305 119 aaPredicted RBP12.47□□□□□ -0.41
PHGDH-234ENST00000642041 SUMO2P61956 95 aaKnown RBP12.47□□□□□ -0.41
PHGDH-234ENST00000642041 PET117Q6UWS5 81 aa12.47□□□□□ -0.41
PHGDH-234ENST00000642041 ZFP2Q6ZN57 461 aa12.47□□□□□ -0.41
PHGDH-234ENST00000642041 SPATA12Q7Z6I5 190 aa12.47□□□□□ -0.41
PHGDH-234ENST00000642041 RASL10AQ92737 203 aa12.47□□□□□ -0.41
PHGDH-234ENST00000642041 MDFICQ9P1T7 246 aa12.47□□□□□ -0.41
PHGDH-234ENST00000642041 KIF25-AS1Q9Y6Z4 181 aa12.47□□□□□ -0.41
PHGDH-234ENST00000642041 HECTD4Q9Y4D8 3996 aa12.46□□□□□ -0.41
PHGDH-234ENST00000642041 AGRNO00468 2067 aa12.46□□□□□ -0.41
PHGDH-234ENST00000642041 IGHV1-24A0A0C4DH33 117 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms