RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 PRADC1Q9BSG0 188 aa9.66□□□□□ -0.86
CCDC88A-214ENST00000621814 BEX4Q9NWD9 120 aaPredicted RBP9.66□□□□□ -0.86
CCDC88A-214ENST00000621814 IGHV3-73A0A0B4J1V6 119 aa9.65□□□□□ -0.86
CCDC88A-214ENST00000621814 MYMXA0A1B0GTQ4 84 aa9.65□□□□□ -0.86
CCDC88A-214ENST00000621814 KLLNB2CW77 178 aa9.65□□□□□ -0.86
CCDC88A-214ENST00000621814 SNRPD3P62318 126 aaKnown RBP9.65□□□□□ -0.86
CCDC88A-214ENST00000621814 DEFB136Q30KP8 78 aa9.65□□□□□ -0.86
CCDC88A-214ENST00000621814 ZNF815PA8K554 130 aa9.65□□□□□ -0.86
CCDC88A-214ENST00000621814 PRM2P04554 102 aa9.65□□□□□ -0.86
CCDC88A-214ENST00000621814 SLC25A16P16260 332 aa9.65□□□□□ -0.86
CCDC88A-214ENST00000621814 CFHR3Q02985 330 aa9.65□□□□□ -0.86
CCDC88A-214ENST00000621814 ZNF462Q96JM2 2506 aa9.65□□□□□ -0.86
CCDC88A-214ENST00000621814 SDHAF1A6NFY7 115 aa9.64□□□□□ -0.87
CCDC88A-214ENST00000621814 Q8N1Y9 231 aa9.64□□□□□ -0.87
CCDC88A-214ENST00000621814 KIR2DL4Q99706 377 aa9.64□□□□□ -0.87
CCDC88A-214ENST00000621814 OPRPNQ99935 248 aaPredicted RBP9.64□□□□□ -0.87
CCDC88A-214ENST00000621814 TLN2Q9Y4G6 2542 aa9.64□□□□□ -0.87
CCDC88A-214ENST00000621814 TRAV12-1A0A0B4J245 112 aa9.64□□□□□ -0.87
CCDC88A-214ENST00000621814 SRSF9Q13242 221 aaKnown RBP eCLIP9.64□□□□□ -0.87
CCDC88A-214ENST00000621814 C12orf74Q32Q52 190 aa9.64□□□□□ -0.87
CCDC88A-214ENST00000621814 DUX3Q96PT4 197 aa9.64□□□□□ -0.87
CCDC88A-214ENST00000621814 PTPN13Q12923 2485 aa9.64□□□□□ -0.87
CCDC88A-214ENST00000621814 LINC00315P59091 139 aa9.64□□□□□ -0.87
CCDC88A-214ENST00000621814 KHDC1LQ5JSQ8 128 aa9.64□□□□□ -0.87
CCDC88A-214ENST00000621814 TMEM170BQ5T4T1 132 aa9.64□□□□□ -0.87
CCDC88A-214ENST00000621814 ZFP2Q6ZN57 461 aa9.64□□□□□ -0.87
CCDC88A-214ENST00000621814 TM2D2Q9BX73 214 aa9.64□□□□□ -0.87
CCDC88A-214ENST00000621814 IGHV4OR15-8A0A075B7B6 117 aa9.63□□□□□ -0.87
CCDC88A-214ENST00000621814 A0A087WW49 117 aa9.63□□□□□ -0.87
CCDC88A-214ENST00000621814 ZNF479Q96JC4 524 aa9.63□□□□□ -0.87
CCDC88A-214ENST00000621814 H3BMG7 143 aa9.63□□□□□ -0.87
CCDC88A-214ENST00000621814 LINC01356Q8N9X3 169 aa9.63□□□□□ -0.87
CCDC88A-214ENST00000621814 PLEKHB2Q96CS7 222 aa9.63□□□□□ -0.87
CCDC88A-214ENST00000621814 KIF25-AS1Q9Y6Z4 181 aa9.63□□□□□ -0.87
CCDC88A-214ENST00000621814 K7EMT4 169 aa9.62□□□□□ -0.87
CCDC88A-214ENST00000621814 C18orf65Q6ZTR6 163 aa9.62□□□□□ -0.87
CCDC88A-214ENST00000621814 MYO9AB2RTY4 2548 aa9.62□□□□□ -0.87
CCDC88A-214ENST00000621814 IGHV3-64A0A075B6Q5 118 aa9.62□□□□□ -0.87
CCDC88A-214ENST00000621814 C11orf86A6NJI1 115 aa9.62□□□□□ -0.87
CCDC88A-214ENST00000621814 IGLL5B9A064 214 aa9.62□□□□□ -0.87
CCDC88A-214ENST00000621814 TSHBP01222 138 aa9.62□□□□□ -0.87
CCDC88A-214ENST00000621814 LGALS1P09382 135 aaKnown RBP9.62□□□□□ -0.87
CCDC88A-214ENST00000621814 APRG1Q8IVJ8 170 aa9.62□□□□□ -0.87
CCDC88A-214ENST00000621814 PHLDA1Q8WV24 401 aaPredicted RBP9.62□□□□□ -0.87
CCDC88A-214ENST00000621814 KNCNA6PVL3 124 aa9.62□□□□□ -0.87
CCDC88A-214ENST00000621814 PPP1R17O96001 155 aa9.62□□□□□ -0.87
CCDC88A-214ENST00000621814 CRYGDP07320 174 aa9.62□□□□□ -0.87
CCDC88A-214ENST00000621814 OR5A1Q8NGJ0 315 aa9.62□□□□□ -0.87
CCDC88A-214ENST00000621814 NAV2Q8IVL1 2488 aa9.61□□□□□ -0.87
CCDC88A-214ENST00000621814 A0A0J9YX75 114 aa9.61□□□□□ -0.87
CCDC88A-214ENST00000621814 VCYO14598 125 aa9.61□□□□□ -0.87
CCDC88A-214ENST00000621814 MED14OSP0DP75 135 aa9.61□□□□□ -0.87
CCDC88A-214ENST00000621814 HOXD3P31249 432 aaPredicted RBP9.61□□□□□ -0.87
CCDC88A-214ENST00000621814 ZNF876PQ49A33 203 aa9.61□□□□□ -0.87
CCDC88A-214ENST00000621814 TEX15Q9BXT5 2789 aa9.61□□□□□ -0.87
CCDC88A-214ENST00000621814 IGHV3-16A0A0C4DH30 117 aa9.6□□□□□ -0.87
CCDC88A-214ENST00000621814 HOXA3O43365 443 aaPredicted RBP9.6□□□□□ -0.87
CCDC88A-214ENST00000621814 BRI3O95415 125 aa9.6□□□□□ -0.87
CCDC88A-214ENST00000621814 SLURP1P55000 103 aa9.6□□□□□ -0.87
CCDC88A-214ENST00000621814 APOMO95445 188 aa9.59□□□□□ -0.87
CCDC88A-214ENST00000621814 SONP18583 2426 aaKnown RBP9.59□□□□□ -0.87
CCDC88A-214ENST00000621814 IGHV1OR15-1A0A075B7D0 117 aa9.59□□□□□ -0.87
CCDC88A-214ENST00000621814 E9PLD3 99 aa9.59□□□□□ -0.87
CCDC88A-214ENST00000621814 POLR2KP53803 58 aaKnown RBP9.59□□□□□ -0.87
CCDC88A-214ENST00000621814 WFDC2Q14508 124 aa9.59□□□□□ -0.87
CCDC88A-214ENST00000621814 TCTEX1D4Q5JR98 221 aa9.59□□□□□ -0.87
CCDC88A-214ENST00000621814 K7EQG2 157 aa9.59□□□□□ -0.87
CCDC88A-214ENST00000621814 PMVKQ15126 192 aa9.59□□□□□ -0.87
CCDC88A-214ENST00000621814 SYT8Q8NBV8 401 aa9.59□□□□□ -0.87
CCDC88A-214ENST00000621814 TRBV7-3A0A075B6L6 115 aa9.58□□□□□ -0.88
CCDC88A-214ENST00000621814 TRBV7-9A0A0J9YWB2 115 aa9.58□□□□□ -0.88
CCDC88A-214ENST00000621814 TEX48A0A1B0GUV7 120 aa9.58□□□□□ -0.88
CCDC88A-214ENST00000621814 IGIPA6NJ69 53 aa9.58□□□□□ -0.88
CCDC88A-214ENST00000621814 P0DMU3 169 aa9.58□□□□□ -0.88
CCDC88A-214ENST00000621814 FAM231AP0DMU4 169 aa9.58□□□□□ -0.88
CCDC88A-214ENST00000621814 FAM231CP0DMU5 169 aa9.58□□□□□ -0.88
CCDC88A-214ENST00000621814 MRPL16Q9NX20 251 aaKnown RBP9.58□□□□□ -0.88
CCDC88A-214ENST00000621814 NOTCH3Q9UM47 2321 aa9.58□□□□□ -0.88
CCDC88A-214ENST00000621814 PROK1P58294 105 aa9.58□□□□□ -0.88
CCDC88A-214ENST00000621814 PGPEP1Q9NXJ5 209 aa9.58□□□□□ -0.88
CCDC88A-214ENST00000621814 IGLV4-69A0A075B6H9 119 aa9.57□□□□□ -0.88
CCDC88A-214ENST00000621814 NXPH4O95158 308 aa9.57□□□□□ -0.88
CCDC88A-214ENST00000621814 GATA3P23771 443 aa9.57□□□□□ -0.88
CCDC88A-214ENST00000621814 DEFB131AP59861 70 aa9.57□□□□□ -0.88
CCDC88A-214ENST00000621814 KRTAP10-9P60411 292 aa9.57□□□□□ -0.88
CCDC88A-214ENST00000621814 FOXI2Q6ZQN5 318 aa9.57□□□□□ -0.88
CCDC88A-214ENST00000621814 SH2D6Q7Z4S9 175 aa9.57□□□□□ -0.88
CCDC88A-214ENST00000621814 LOC107984156A0A0G2JMH3 177 aa9.57□□□□□ -0.88
CCDC88A-214ENST00000621814 G3V4G9 280 aa9.57□□□□□ -0.88
CCDC88A-214ENST00000621814 ARL17AQ8IVW1 177 aa9.57□□□□□ -0.88
CCDC88A-214ENST00000621814 ZNRF2Q8NHG8 242 aa9.57□□□□□ -0.88
CCDC88A-214ENST00000621814 VPREB3Q9UKI3 123 aa9.57□□□□□ -0.88
CCDC88A-214ENST00000621814 SETD2Q9BYW2 2564 aaPredicted RBP9.57□□□□□ -0.88
CCDC88A-214ENST00000621814 M0QY20 66 aa9.57□□□□□ -0.88
CCDC88A-214ENST00000621814 C11orf44Q8N8P7 122 aa9.57□□□□□ -0.88
CCDC88A-214ENST00000621814 LINC01549A6NIU2 74 aa9.56□□□□□ -0.88
CCDC88A-214ENST00000621814 COX6B1P14854 86 aa9.56□□□□□ -0.88
CCDC88A-214ENST00000621814 HERVK_113P61574 105 aa9.56□□□□□ -0.88
CCDC88A-214ENST00000621814 TAL2Q16559 108 aa9.56□□□□□ -0.88
CCDC88A-214ENST00000621814 MORN3Q6PF18 240 aaPredicted RBP9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms