RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 MDFICQ9P1T7 246 aa12.57□□□□□ -0.4
SHKBP1-216ENST00000598201 IGHV3-16A0A0C4DH30 117 aa12.57□□□□□ -0.4
SHKBP1-216ENST00000598201 Q8N1Y9 231 aa12.57□□□□□ -0.4
SHKBP1-216ENST00000598201 SPAG8Q99932 426 aaPredicted RBP12.57□□□□□ -0.4
SHKBP1-216ENST00000598201 ZNF747Q9BV97 191 aa12.57□□□□□ -0.4
SHKBP1-216ENST00000598201 IGHV1OR15-1A0A075B7D0 117 aa12.56□□□□□ -0.4
SHKBP1-216ENST00000598201 MAJINQ3KP22 176 aa12.56□□□□□ -0.4
SHKBP1-216ENST00000598201 HSPB8Q9UJY1 196 aa12.56□□□□□ -0.4
SHKBP1-216ENST00000598201 OR4C46A6NHA9 309 aa12.55□□□□□ -0.4
SHKBP1-216ENST00000598201 C20orf144Q9BQM9 153 aa12.55□□□□□ -0.4
SHKBP1-216ENST00000598201 MCRIP2Q9BUT9 160 aaKnown RBP12.55□□□□□ -0.4
SHKBP1-216ENST00000598201 DPH3P1Q9H4G8 78 aa12.55□□□□□ -0.4
SHKBP1-216ENST00000598201 JPT2Q9H910 190 aa12.55□□□□□ -0.4
SHKBP1-216ENST00000598201 IGLV2-18A0A075B6J9 118 aa12.55□□□□□ -0.4
SHKBP1-216ENST00000598201 LINC01546A6NGU7 62 aa12.55□□□□□ -0.4
SHKBP1-216ENST00000598201 KRTAP10-3P60369 221 aa12.55□□□□□ -0.4
SHKBP1-216ENST00000598201 MRAP2Q96G30 205 aa12.55□□□□□ -0.4
SHKBP1-216ENST00000598201 C9orf85Q96MD7 179 aa12.55□□□□□ -0.4
SHKBP1-216ENST00000598201 NSUN5P1Q3KNT7 163 aa12.54□□□□□ -0.4
SHKBP1-216ENST00000598201 ODF3L2Q3SX64 289 aa12.54□□□□□ -0.4
SHKBP1-216ENST00000598201 AP1S3Q96PC3 154 aa12.54□□□□□ -0.4
SHKBP1-216ENST00000598201 MAP1LC3CQ9BXW4 147 aa12.54□□□□□ -0.4
SHKBP1-216ENST00000598201 TRAV25A0A0B4J276 109 aa12.53□□□□□ -0.4
SHKBP1-216ENST00000598201 H0Y8G0 127 aa12.53□□□□□ -0.4
SHKBP1-216ENST00000598201 NXT2Q9NPJ8 142 aaKnown RBP12.53□□□□□ -0.4
SHKBP1-216ENST00000598201 KIF25-AS1Q9Y6Z4 181 aa12.53□□□□□ -0.4
SHKBP1-216ENST00000598201 HBDP02042 147 aa12.53□□□□□ -0.4
SHKBP1-216ENST00000598201 MGPP08493 103 aa12.53□□□□□ -0.4
SHKBP1-216ENST00000598201 LINC00315P59091 139 aa12.53□□□□□ -0.4
SHKBP1-216ENST00000598201 SPATA45Q537H7 98 aa12.53□□□□□ -0.4
SHKBP1-216ENST00000598201 RASL10AQ92737 203 aa12.53□□□□□ -0.4
SHKBP1-216ENST00000598201 MDFIQ99750 246 aa12.53□□□□□ -0.4
SHKBP1-216ENST00000598201 COL6A5A8TX70 2615 aa12.52□□□□□ -0.4
SHKBP1-216ENST00000598201 PRSS47A8MTI9 375 aa12.52□□□□□ -0.4
SHKBP1-216ENST00000598201 Q8N8P6 123 aa12.52□□□□□ -0.4
SHKBP1-216ENST00000598201 CIDEAO60543 219 aa12.52□□□□□ -0.41
SHKBP1-216ENST00000598201 DEFB125Q8N687 156 aa12.52□□□□□ -0.41
SHKBP1-216ENST00000598201 RPL39LQ96EH5 51 aaKnown RBP12.52□□□□□ -0.41
SHKBP1-216ENST00000598201 K7EP13 123 aa12.51□□□□□ -0.41
SHKBP1-216ENST00000598201 PET117Q6UWS5 81 aa12.51□□□□□ -0.41
SHKBP1-216ENST00000598201 PRM2P04554 102 aa12.5□□□□□ -0.41
SHKBP1-216ENST00000598201 PMCHL2Q9BQD1 86 aa12.5□□□□□ -0.41
SHKBP1-216ENST00000598201 A0A087WWL8 130 aa12.5□□□□□ -0.41
SHKBP1-216ENST00000598201 SAP30O75446 220 aa12.5□□□□□ -0.41
SHKBP1-216ENST00000598201 ZNF705AQ6ZN79 300 aaPredicted RBP12.5□□□□□ -0.41
SHKBP1-216ENST00000598201 POM121L12Q8N7R1 296 aa12.5□□□□□ -0.41
SHKBP1-216ENST00000598201 TRAV9-2A0A087WT02 112 aa12.49□□□□□ -0.41
SHKBP1-216ENST00000598201 CBY3A6NI87 242 aa12.49□□□□□ -0.41
SHKBP1-216ENST00000598201 HSBP1L1C9JCN9 74 aa12.49□□□□□ -0.41
SHKBP1-216ENST00000598201 HTN1P15515 57 aa12.49□□□□□ -0.41
SHKBP1-216ENST00000598201 KRTAP21-3Q3LHN1 58 aa12.49□□□□□ -0.41
SHKBP1-216ENST00000598201 C20orf202A1L168 122 aa12.49□□□□□ -0.41
SHKBP1-216ENST00000598201 FCER1GP30273 86 aa12.49□□□□□ -0.41
SHKBP1-216ENST00000598201 LINC01545Q5VT33 79 aa12.49□□□□□ -0.41
SHKBP1-216ENST00000598201 C12orf54Q6X4T0 127 aa12.49□□□□□ -0.41
SHKBP1-216ENST00000598201 MIEN1Q9BRT3 115 aa12.48□□□□□ -0.41
SHKBP1-216ENST00000598201 TRGV11A0A075B6L2 103 aa12.47□□□□□ -0.41
SHKBP1-216ENST00000598201 SMIM17P0DL12 118 aa12.47□□□□□ -0.41
SHKBP1-216ENST00000598201 IGLL1P15814 213 aa12.47□□□□□ -0.41
SHKBP1-216ENST00000598201 RNASE8Q8TDE3 154 aaKnown RBP12.47□□□□□ -0.41
SHKBP1-216ENST00000598201 SMIM2Q9BVW6 85 aa12.47□□□□□ -0.41
SHKBP1-216ENST00000598201 TENM1Q9UKZ4 2725 aa12.47□□□□□ -0.41
SHKBP1-216ENST00000598201 SUMO2P61956 95 aaKnown RBP12.47□□□□□ -0.41
SHKBP1-216ENST00000598201 C3orf56Q8N813 242 aa12.47□□□□□ -0.41
SHKBP1-216ENST00000598201 C18orf15Q96N68 181 aa12.47□□□□□ -0.41
SHKBP1-216ENST00000598201 hDV102S1A0JD36 115 aa12.46□□□□□ -0.41
SHKBP1-216ENST00000598201 OR11H12B2RN74 326 aa12.46□□□□□ -0.41
SHKBP1-216ENST00000598201 IGLV1-51P01701 117 aa12.46□□□□□ -0.41
SHKBP1-216ENST00000598201 COL5A1-AS1Q5SY13 56 aa12.46□□□□□ -0.41
SHKBP1-216ENST00000598201 IFI27L1Q96BM0 104 aa12.46□□□□□ -0.41
SHKBP1-216ENST00000598201 IGLC3P0DOY3 106 aa12.46□□□□□ -0.42
SHKBP1-216ENST00000598201 LAGE3Q14657 143 aa12.46□□□□□ -0.42
SHKBP1-216ENST00000598201 FAM74A4Q5TZK3 123 aa12.46□□□□□ -0.42
SHKBP1-216ENST00000598201 SUMO4Q6EEV6 95 aa12.46□□□□□ -0.42
SHKBP1-216ENST00000598201 NDUFA11Q86Y39 141 aa12.46□□□□□ -0.42
SHKBP1-216ENST00000598201 SYT8Q8NBV8 401 aa12.46□□□□□ -0.42
SHKBP1-216ENST00000598201 C20orf78Q9BR46 151 aa12.46□□□□□ -0.42
SHKBP1-216ENST00000598201 CRYGDP07320 174 aa12.45□□□□□ -0.42
SHKBP1-216ENST00000598201 ZNF876PQ49A33 203 aa12.45□□□□□ -0.42
SHKBP1-216ENST00000598201 CLUHP3Q96NS8 147 aa12.45□□□□□ -0.42
SHKBP1-216ENST00000598201 TRPT1Q86TN4 253 aaKnown RBP12.44□□□□□ -0.42
SHKBP1-216ENST00000598201 STHQ8IWL8 128 aa12.44□□□□□ -0.42
SHKBP1-216ENST00000598201 F5H697 171 aa12.44□□□□□ -0.42
SHKBP1-216ENST00000598201 CITED1Q99966 193 aa12.44□□□□□ -0.42
SHKBP1-216ENST00000598201 XCL2Q9UBD3 114 aa12.44□□□□□ -0.42
SHKBP1-216ENST00000598201 ORAOV1Q8WV07 137 aa12.43□□□□□ -0.42
SHKBP1-216ENST00000598201 LINC01587Q99440 93 aa12.43□□□□□ -0.42
SHKBP1-216ENST00000598201 STAB1Q9NY15 2570 aa12.43□□□□□ -0.42
SHKBP1-216ENST00000598201 INSP01308 110 aa12.42□□□□□ -0.42
SHKBP1-216ENST00000598201 WFDC10AQ9H1F0 79 aa12.42□□□□□ -0.42
SHKBP1-216ENST00000598201 NEGR1Q7Z3B1 354 aa12.42□□□□□ -0.42
SHKBP1-216ENST00000598201 CSTL1Q9H114 145 aa12.42□□□□□ -0.42
SHKBP1-216ENST00000598201 LGALS9BQ3B8N2 356 aa12.41□□□□□ -0.42
SHKBP1-216ENST00000598201 LGALS9CQ6DKI2 356 aa12.41□□□□□ -0.42
SHKBP1-216ENST00000598201 UQCR10Q9UDW1 63 aa12.41□□□□□ -0.42
SHKBP1-216ENST00000598201 PPP1R17O96001 155 aa12.41□□□□□ -0.42
SHKBP1-216ENST00000598201 BEAN1Q3B7T3 259 aa12.41□□□□□ -0.42
SHKBP1-216ENST00000598201 SHISA2Q6UWI4 295 aa12.41□□□□□ -0.42
SHKBP1-216ENST00000598201 C19orf73Q9NVV2 129 aa12.41□□□□□ -0.42
SHKBP1-216ENST00000598201 NUDT3O95989 172 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 147.7 ms