RNA–Protein interactions for RNA: ENST00000585163.5

CDK5RAP3-237, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,519 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-237ENST00000585163 CHD8Q9HCK8 2581 aa10.61□□□□□ -0.71
CDK5RAP3-237ENST00000585163 COL12A1Q99715 3063 aa10.61□□□□□ -0.71
CDK5RAP3-237ENST00000585163 ZNF815PA8K554 130 aa10.61□□□□□ -0.71
CDK5RAP3-237ENST00000585163 H3BMG7 143 aa10.61□□□□□ -0.71
CDK5RAP3-237ENST00000585163 MSMBP08118 114 aa10.61□□□□□ -0.71
CDK5RAP3-237ENST00000585163 ATP5J2P56134 94 aa10.61□□□□□ -0.71
CDK5RAP3-237ENST00000585163 SMAGPQ0VAQ4 97 aa10.61□□□□□ -0.71
CDK5RAP3-237ENST00000585163 TP53TG1Q9Y2A0 90 aa10.61□□□□□ -0.71
CDK5RAP3-237ENST00000585163 IGLV4-69A0A075B6H9 119 aa10.6□□□□□ -0.71
CDK5RAP3-237ENST00000585163 IGHV4-30-2A0A087WSY4 118 aa10.6□□□□□ -0.71
CDK5RAP3-237ENST00000585163 WFDC2Q14508 124 aa10.6□□□□□ -0.71
CDK5RAP3-237ENST00000585163 SS18L2Q9UHA2 77 aa10.6□□□□□ -0.71
CDK5RAP3-237ENST00000585163 VCYO14598 125 aa10.6□□□□□ -0.71
CDK5RAP3-237ENST00000585163 CD7P09564 240 aa10.6□□□□□ -0.71
CDK5RAP3-237ENST00000585163 PAPPA-AS1Q5QFB9 102 aa10.6□□□□□ -0.71
CDK5RAP3-237ENST00000585163 VCX2Q9H322 139 aa10.6□□□□□ -0.71
CDK5RAP3-237ENST00000585163 TRAV12-3A0A0B4J271 114 aa10.59□□□□□ -0.71
CDK5RAP3-237ENST00000585163 C11orf86A6NJI1 115 aa10.59□□□□□ -0.71
CDK5RAP3-237ENST00000585163 HOXA3O43365 443 aaPredicted RBP10.59□□□□□ -0.71
CDK5RAP3-237ENST00000585163 MORN3Q6PF18 240 aaPredicted RBP10.59□□□□□ -0.71
CDK5RAP3-237ENST00000585163 KIR2DL4Q99706 377 aa10.59□□□□□ -0.71
CDK5RAP3-237ENST00000585163 GEMIN7Q9H840 131 aaKnown RBP10.59□□□□□ -0.71
CDK5RAP3-237ENST00000585163 SPANXB1Q9NS25 103 aaPredicted RBP10.59□□□□□ -0.71
CDK5RAP3-237ENST00000585163 ZNF580Q9UK33 172 aa10.59□□□□□ -0.71
CDK5RAP3-237ENST00000585163 A0A087WWL8 130 aa10.59□□□□□ -0.71
CDK5RAP3-237ENST00000585163 PMVKQ15126 192 aa10.59□□□□□ -0.71
CDK5RAP3-237ENST00000585163 AMTNQ6UX39 209 aa10.59□□□□□ -0.71
CDK5RAP3-237ENST00000585163 CD300EQ496F6 205 aaPredicted RBP10.58□□□□□ -0.72
CDK5RAP3-237ENST00000585163 SCGB1D4Q6XE38 83 aa10.58□□□□□ -0.72
CDK5RAP3-237ENST00000585163 PLEKHB2Q96CS7 222 aa10.58□□□□□ -0.72
CDK5RAP3-237ENST00000585163 TMEM141Q96I45 108 aa10.58□□□□□ -0.72
CDK5RAP3-237ENST00000585163 TIMM17AQ99595 171 aa10.58□□□□□ -0.72
CDK5RAP3-237ENST00000585163 TRBV27A0A0K0K1C4 114 aa10.58□□□□□ -0.72
CDK5RAP3-237ENST00000585163 SDHAF1A6NFY7 115 aa10.58□□□□□ -0.72
CDK5RAP3-237ENST00000585163 F5H697 171 aa10.58□□□□□ -0.72
CDK5RAP3-237ENST00000585163 LGALS9O00182 355 aa10.58□□□□□ -0.72
CDK5RAP3-237ENST00000585163 AVPP01185 164 aa10.58□□□□□ -0.72
CDK5RAP3-237ENST00000585163 PSMB8P28062 276 aa10.58□□□□□ -0.72
CDK5RAP3-237ENST00000585163 ODF3Q96PU9 254 aa10.58□□□□□ -0.72
CDK5RAP3-237ENST00000585163 TRBV6-5A0A0K0K1A5 114 aa10.57□□□□□ -0.72
CDK5RAP3-237ENST00000585163 RPL39P62891 51 aaKnown RBP10.57□□□□□ -0.72
CDK5RAP3-237ENST00000585163 KLHL30-AS1Q8NEE0 82 aa10.57□□□□□ -0.72
CDK5RAP3-237ENST00000585163 C9orf85Q96MD7 179 aa10.57□□□□□ -0.72
CDK5RAP3-237ENST00000585163 GTSF1LQ9H1H1 148 aa10.57□□□□□ -0.72
CDK5RAP3-237ENST00000585163 GAGE13Q4V321 117 aa10.57□□□□□ -0.72
CDK5RAP3-237ENST00000585163 PRO0461Q9UI25 63 aa10.57□□□□□ -0.72
CDK5RAP3-237ENST00000585163 IGHV3-16A0A0C4DH30 117 aa10.56□□□□□ -0.72
CDK5RAP3-237ENST00000585163 UBE2D1P51668 147 aa10.56□□□□□ -0.72
CDK5RAP3-237ENST00000585163 HERVK_113P61574 105 aa10.56□□□□□ -0.72
CDK5RAP3-237ENST00000585163 SRSF9Q13242 221 aaKnown RBP eCLIP10.56□□□□□ -0.722e-12■■□□□ 12.4
CDK5RAP3-237ENST00000585163 DEFB104AQ8WTQ1 72 aa10.56□□□□□ -0.72
CDK5RAP3-237ENST00000585163 EMP1P54849 157 aa10.56□□□□□ -0.72
CDK5RAP3-237ENST00000585163 A0A0J9YX75 114 aa10.55□□□□□ -0.72
CDK5RAP3-237ENST00000585163 ZNF688P0C7X2 276 aa10.55□□□□□ -0.72
CDK5RAP3-237ENST00000585163 ETDBQ3ZM63 59 aa10.55□□□□□ -0.72
CDK5RAP3-237ENST00000585163 B4DSR2 109 aa10.55□□□□□ -0.72
CDK5RAP3-237ENST00000585163 ZNF876PQ49A33 203 aa10.55□□□□□ -0.72
CDK5RAP3-237ENST00000585163 FAM74A4Q5TZK3 123 aa10.55□□□□□ -0.72
CDK5RAP3-237ENST00000585163 MRPL16Q9NX20 251 aaKnown RBP10.55□□□□□ -0.72
CDK5RAP3-237ENST00000585163 MDFICQ9P1T7 246 aa10.55□□□□□ -0.72
CDK5RAP3-237ENST00000585163 CELSR2Q9HCU4 2923 aa10.55□□□□□ -0.72
CDK5RAP3-237ENST00000585163 A0A0J9YY99 117 aa10.54□□□□□ -0.72
CDK5RAP3-237ENST00000585163 J3QR89 54 aa10.54□□□□□ -0.72
CDK5RAP3-237ENST00000585163 TGFAP01135 160 aa10.54□□□□□ -0.72
CDK5RAP3-237ENST00000585163 SH2D6Q7Z4S9 175 aa10.54□□□□□ -0.72
CDK5RAP3-237ENST00000585163 TRAV12-2A0A075B6T6 113 aa10.54□□□□□ -0.72
CDK5RAP3-237ENST00000585163 M0QY20 66 aa10.54□□□□□ -0.72
CDK5RAP3-237ENST00000585163 SNRPD3P62318 126 aaKnown RBP10.54□□□□□ -0.72
CDK5RAP3-237ENST00000585163 Q8N1Y9 231 aa10.54□□□□□ -0.72
CDK5RAP3-237ENST00000585163 MAP1AP78559 2803 aaPredicted RBP10.54□□□□□ -0.72
CDK5RAP3-237ENST00000585163 C10orf99Q6UWK7 81 aa10.53□□□□□ -0.72
CDK5RAP3-237ENST00000585163 SYT8Q8NBV8 401 aa10.53□□□□□ -0.72
CDK5RAP3-237ENST00000585163 ZNRF2Q8NHG8 242 aa10.53□□□□□ -0.72
CDK5RAP3-237ENST00000585163 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.53□□□□□ -0.723e-7■■■□□ 15.6
CDK5RAP3-237ENST00000585163 K7EQG2 157 aa10.53□□□□□ -0.72
CDK5RAP3-237ENST00000585163 TRAV25A0A0B4J276 109 aa10.52□□□□□ -0.72
CDK5RAP3-237ENST00000585163 IGKV3-20P01619 116 aa10.52□□□□□ -0.72
CDK5RAP3-237ENST00000585163 IGHV4-59P01825 116 aa10.52□□□□□ -0.72
CDK5RAP3-237ENST00000585163 TSPEAR-AS2P59090 65 aa10.52□□□□□ -0.72
CDK5RAP3-237ENST00000585163 TMEM170BQ5T4T1 132 aa10.52□□□□□ -0.72
CDK5RAP3-237ENST00000585163 ZNF256Q9Y2P7 627 aaPredicted RBP10.52□□□□□ -0.72
CDK5RAP3-237ENST00000585163 TMEM89A2RUT3 159 aa10.52□□□□□ -0.73
CDK5RAP3-237ENST00000585163 GATA3P23771 443 aa10.52□□□□□ -0.73
CDK5RAP3-237ENST00000585163 ZNF56Q15929 161 aa10.52□□□□□ -0.73
CDK5RAP3-237ENST00000585163 NSUN5P1Q3KNT7 163 aa10.52□□□□□ -0.73
CDK5RAP3-237ENST00000585163 SPAG8Q99932 426 aaPredicted RBP10.52□□□□□ -0.73
CDK5RAP3-237ENST00000585163 SPG11Q96JI7 2443 aa10.51□□□□□ -0.73
CDK5RAP3-237ENST00000585163 IGHV1OR15-1A0A075B7D0 117 aa10.51□□□□□ -0.73
CDK5RAP3-237ENST00000585163 CRYBG3Q68DQ2 2970 aa10.51□□□□□ -0.73
CDK5RAP3-237ENST00000585163 RHOHQ15669 191 aa10.51□□□□□ -0.73
CDK5RAP3-237ENST00000585163 DEFB112Q30KQ8 113 aa10.51□□□□□ -0.73
CDK5RAP3-237ENST00000585163 SMIM20Q8N5G0 67 aa10.51□□□□□ -0.73
CDK5RAP3-237ENST00000585163 SLC25A29Q8N8R3 303 aa10.51□□□□□ -0.73
CDK5RAP3-237ENST00000585163 DLX4Q92988 240 aaPredicted RBP10.51□□□□□ -0.73
CDK5RAP3-237ENST00000585163 RAX2Q96IS3 184 aa10.51□□□□□ -0.73
CDK5RAP3-237ENST00000585163 TSSC4Q9Y5U2 329 aaPredicted RBP10.51□□□□□ -0.73
CDK5RAP3-237ENST00000585163 GAGE12HA6NDE8 117 aa10.5□□□□□ -0.73
CDK5RAP3-237ENST00000585163 SPINK13Q1W4C9 94 aa10.5□□□□□ -0.73
CDK5RAP3-237ENST00000585163 TRPT1Q86TN4 253 aaKnown RBP10.5□□□□□ -0.73
CDK5RAP3-237ENST00000585163 NFE4Q86UQ8 179 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms