RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 CDK2AP2O75956 126 aa13.69□□□□□ -0.22
CLK3-225ENST00000569063 ERVFC1-1P60608 527 aa13.69□□□□□ -0.22
CLK3-225ENST00000569063 GAGE1Q13065 139 aa13.69□□□□□ -0.22
CLK3-225ENST00000569063 GAGE4Q13068 117 aa13.69□□□□□ -0.22
CLK3-225ENST00000569063 GAGE5Q13069 117 aa13.69□□□□□ -0.22
CLK3-225ENST00000569063 GAGE13Q4V321 117 aa13.69□□□□□ -0.22
CLK3-225ENST00000569063 FAM74A4Q5TZK3 123 aa13.69□□□□□ -0.22
CLK3-225ENST00000569063 A0A087WWL8 130 aa13.68□□□□□ -0.22
CLK3-225ENST00000569063 RPL19P84098 196 aaKnown RBP13.68□□□□□ -0.22
CLK3-225ENST00000569063 AKAP14Q86UN6 197 aa13.68□□□□□ -0.22
CLK3-225ENST00000569063 DERL1Q9BUN8 251 aa13.68□□□□□ -0.22
CLK3-225ENST00000569063 IBA57-AS1B1ANH7 110 aa13.67□□□□□ -0.22
CLK3-225ENST00000569063 EREGO14944 169 aa13.67□□□□□ -0.22
CLK3-225ENST00000569063 PRR27Q6MZM9 219 aa13.67□□□□□ -0.22
CLK3-225ENST00000569063 SSBP4Q9BWG4 385 aaPredicted RBP13.67□□□□□ -0.22
CLK3-225ENST00000569063 SNAI2O43623 268 aa13.66□□□□□ -0.22
CLK3-225ENST00000569063 MEF2BQ02080 365 aaPredicted RBP13.66□□□□□ -0.22
CLK3-225ENST00000569063 PGPEP1Q9NXJ5 209 aa13.66□□□□□ -0.22
CLK3-225ENST00000569063 A0A087WTM6 91 aa13.65□□□□□ -0.22
CLK3-225ENST00000569063 PDE6DO43924 150 aa13.65□□□□□ -0.22
CLK3-225ENST00000569063 IFNA1P01562 189 aa13.65□□□□□ -0.22
CLK3-225ENST00000569063 OR5AL1P0C617 328 aa13.65□□□□□ -0.22
CLK3-225ENST00000569063 CENPWQ5EE01 88 aa13.65□□□□□ -0.22
CLK3-225ENST00000569063 C9orf62Q8N4C0 152 aa13.65□□□□□ -0.22
CLK3-225ENST00000569063 A0A087WWC5 75 aa13.64□□□□□ -0.23
CLK3-225ENST00000569063 TRBV10-1A0A0K0K1A3 114 aa13.64□□□□□ -0.23
CLK3-225ENST00000569063 IGLV2-8P01709 118 aa13.64□□□□□ -0.23
CLK3-225ENST00000569063 IGHV3-30P01768 117 aa13.64□□□□□ -0.23
CLK3-225ENST00000569063 IGHV3-33P01772 117 aa13.64□□□□□ -0.23
CLK3-225ENST00000569063 IGHV3-30-3P0DP02 117 aa13.64□□□□□ -0.23
CLK3-225ENST00000569063 IGHV3-30-5P0DP03 117 aa13.64□□□□□ -0.23
CLK3-225ENST00000569063 OR10AG1Q8NH19 301 aa13.64□□□□□ -0.23
CLK3-225ENST00000569063 SMIM12Q96EX1 92 aa13.64□□□□□ -0.23
CLK3-225ENST00000569063 LRP1BQ9NZR2 4599 aa13.63□□□□□ -0.23
CLK3-225ENST00000569063 hCG_2014768A0A024R1R8 64 aa13.63□□□□□ -0.23
CLK3-225ENST00000569063 BCL2P10415 239 aa13.63□□□□□ -0.23
CLK3-225ENST00000569063 KRTAP17-1Q9BYP8 105 aa13.63□□□□□ -0.23
CLK3-225ENST00000569063 VAX2Q9UIW0 290 aa13.63□□□□□ -0.23
CLK3-225ENST00000569063 RAB4BP61018 213 aa13.62□□□□□ -0.23
CLK3-225ENST00000569063 CDPF1Q6NVV7 123 aa13.62□□□□□ -0.23
CLK3-225ENST00000569063 RYR1P21817 5038 aa13.62□□□□□ -0.23
CLK3-225ENST00000569063 RAB19A4D1S5 217 aa13.61□□□□□ -0.23
CLK3-225ENST00000569063 TAGLN2P37802 199 aaKnown RBP13.61□□□□□ -0.23
CLK3-225ENST00000569063 GNG4P50150 75 aa13.61□□□□□ -0.23
CLK3-225ENST00000569063 LAGE3Q14657 143 aa13.61□□□□□ -0.23
CLK3-225ENST00000569063 SPANXN1Q5VSR9 72 aa13.61□□□□□ -0.23
CLK3-225ENST00000569063 MED9Q9NWA0 146 aa13.61□□□□□ -0.23
CLK3-225ENST00000569063 C19orf71A6NCJ1 209 aa13.6□□□□□ -0.23
CLK3-225ENST00000569063 DAZAP1Q96EP5 407 aaKnown RBP13.6□□□□□ -0.23
CLK3-225ENST00000569063 TRBV20OR9-2A0A075B6H5 130 aa13.59□□□□□ -0.23
CLK3-225ENST00000569063 TRBV7-3A0A075B6L6 115 aa13.59□□□□□ -0.23
CLK3-225ENST00000569063 MUC21A0A0G2JKD1 596 aa13.59□□□□□ -0.23
CLK3-225ENST00000569063 MUC21A0A140T8X8 626 aa13.59□□□□□ -0.23
CLK3-225ENST00000569063 RPL36AP83881 106 aaKnown RBP13.59□□□□□ -0.23
CLK3-225ENST00000569063 OR10G8Q8NGN5 311 aa13.59□□□□□ -0.23
CLK3-225ENST00000569063 RPL36ALQ969Q0 106 aaKnown RBP13.59□□□□□ -0.23
CLK3-225ENST00000569063 HSPG2P98160 4391 aa13.58□□□□□ -0.23
CLK3-225ENST00000569063 PSCAO43653 123 aa13.58□□□□□ -0.24
CLK3-225ENST00000569063 RPS20P60866 119 aaKnown RBP13.58□□□□□ -0.24
CLK3-225ENST00000569063 UBE2D3P61077 147 aa13.58□□□□□ -0.24
CLK3-225ENST00000569063 UBE2D2P62837 147 aa13.58□□□□□ -0.24
CLK3-225ENST00000569063 Q8N3U1 123 aa13.58□□□□□ -0.24
CLK3-225ENST00000569063 Q9HAA7 133 aa13.58□□□□□ -0.24
CLK3-225ENST00000569063 LRCOL1A6NCL2 159 aa13.57□□□□□ -0.24
CLK3-225ENST00000569063 IGLC6P0CF74 106 aa13.57□□□□□ -0.24
CLK3-225ENST00000569063 FUSP35637 526 aaKnown RBP eCLIP13.57□□□□□ -0.24
CLK3-225ENST00000569063 ZNF56Q15929 161 aa13.57□□□□□ -0.24
CLK3-225ENST00000569063 OR2D3Q8NGH3 330 aa13.57□□□□□ -0.24
CLK3-225ENST00000569063 BIN3Q9NQY0 253 aa13.57□□□□□ -0.24
CLK3-225ENST00000569063 PCLOQ9Y6V0 5065 aa13.57□□□□□ -0.24
CLK3-225ENST00000569063 ALKAL2Q6UX46 152 aa13.56□□□□□ -0.24
CLK3-225ENST00000569063 FER1L6-AS1Q8NA97 138 aa13.56□□□□□ -0.24
CLK3-225ENST00000569063 KIF25-AS1Q9Y6Z4 181 aa13.56□□□□□ -0.24
CLK3-225ENST00000569063 P01737 135 aa13.55□□□□□ -0.24
CLK3-225ENST00000569063 GZMBP10144 247 aa13.55□□□□□ -0.24
CLK3-225ENST00000569063 SSTP61278 116 aa13.55□□□□□ -0.24
CLK3-225ENST00000569063 BLOC1S1P78537 153 aa13.55□□□□□ -0.24
CLK3-225ENST00000569063 DAZ4Q86SG3 579 aaKnown RBP13.55□□□□□ -0.24
CLK3-225ENST00000569063 NIT1Q86X76 327 aa13.55□□□□□ -0.24
CLK3-225ENST00000569063 NEXN-AS1Q8NBZ9 246 aa13.55□□□□□ -0.24
CLK3-225ENST00000569063 DAZ3Q9NR90 486 aaKnown RBP13.55□□□□□ -0.24
CLK3-225ENST00000569063 DNAH5Q8TE73 4624 aa13.54□□□□□ -0.24
CLK3-225ENST00000569063 TRAV8-3A0A0A6YYJ7 113 aa13.54□□□□□ -0.24
CLK3-225ENST00000569063 XKRY2A2RUG3 117 aa13.54□□□□□ -0.24
CLK3-225ENST00000569063 SMIM17P0DL12 118 aa13.54□□□□□ -0.24
CLK3-225ENST00000569063 TOR2AQ5JU69 321 aa13.54□□□□□ -0.24
CLK3-225ENST00000569063 MAPKAPK5-AS1Q8N8E1 139 aa13.54□□□□□ -0.24
CLK3-225ENST00000569063 LYPD6BQ8NI32 183 aa13.54□□□□□ -0.24
CLK3-225ENST00000569063 AP1S3Q96PC3 154 aa13.54□□□□□ -0.24
CLK3-225ENST00000569063 TM2D2Q9BX73 214 aa13.54□□□□□ -0.24
CLK3-225ENST00000569063 URGCP-MRPS24S4R325 110 aa13.54□□□□□ -0.24
CLK3-225ENST00000569063 F2Z2F3 143 aa13.53□□□□□ -0.24
CLK3-225ENST00000569063 F5H697 171 aa13.53□□□□□ -0.24
CLK3-225ENST00000569063 CACNG7P62955 275 aa13.53□□□□□ -0.24
CLK3-225ENST00000569063 TPPP3Q9BW30 176 aa13.53□□□□□ -0.24
CLK3-225ENST00000569063 KRTAP4-5Q9BYR2 181 aa13.53□□□□□ -0.24
CLK3-225ENST00000569063 RBFOX3A6NFN3 312 aa13.52□□□□□ -0.25
CLK3-225ENST00000569063 CHCHD7Q9BUK0 85 aa13.52□□□□□ -0.25
CLK3-225ENST00000569063 APOBP04114 4563 aaKnown RBP13.51□□□□□ -0.25
CLK3-225ENST00000569063 TRBV6-8A0A0A6YYG3 113 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms