RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 DUX3Q96PT4 197 aa13.73□□□□□ -0.21
PRPF40B-208ENST00000548436 TLN2Q9Y4G6 2542 aa13.73□□□□□ -0.21
PRPF40B-208ENST00000548436 ITPR3Q14573 2671 aa13.72□□□□□ -0.21
PRPF40B-208ENST00000548436 IGHV1OR15-1A0A075B7D0 117 aa13.72□□□□□ -0.21
PRPF40B-208ENST00000548436 DUSP14O95147 198 aaKnown RBP13.72□□□□□ -0.21
PRPF40B-208ENST00000548436 C2orf66Q6UXQ4 117 aa13.72□□□□□ -0.21
PRPF40B-208ENST00000548436 TRAV12-1A0A0B4J245 112 aa13.71□□□□□ -0.21
PRPF40B-208ENST00000548436 SEC11AP67812 179 aa13.71□□□□□ -0.21
PRPF40B-208ENST00000548436 HIST2H2BDQ6DRA6 164 aa13.71□□□□□ -0.21
PRPF40B-208ENST00000548436 OR11H1Q8NG94 326 aa13.71□□□□□ -0.21
PRPF40B-208ENST00000548436 LINC01619G3V211 115 aa13.71□□□□□ -0.21
PRPF40B-208ENST00000548436 HSD52Q0P140 79 aa13.71□□□□□ -0.21
PRPF40B-208ENST00000548436 NEXN-AS1Q8NBZ9 246 aa13.7□□□□□ -0.22
PRPF40B-208ENST00000548436 WFDC11Q8NEX6 87 aa13.7□□□□□ -0.22
PRPF40B-208ENST00000548436 MYO9AB2RTY4 2548 aa13.7□□□□□ -0.22
PRPF40B-208ENST00000548436 KNCNA6PVL3 124 aa13.7□□□□□ -0.22
PRPF40B-208ENST00000548436 F5H697 171 aa13.7□□□□□ -0.22
PRPF40B-208ENST00000548436 H7C1H1 209 aa13.7□□□□□ -0.22
PRPF40B-208ENST00000548436 POLR2KP53803 58 aaKnown RBP13.7□□□□□ -0.22
PRPF40B-208ENST00000548436 VAMP3Q15836 100 aa13.7□□□□□ -0.22
PRPF40B-208ENST00000548436 F8VRH5 84 aa13.69□□□□□ -0.22
PRPF40B-208ENST00000548436 RPL32P62910 135 aaKnown RBP13.69□□□□□ -0.22
PRPF40B-208ENST00000548436 FAM74A4Q5TZK3 123 aa13.69□□□□□ -0.22
PRPF40B-208ENST00000548436 DEFB104AQ8WTQ1 72 aa13.69□□□□□ -0.22
PRPF40B-208ENST00000548436 C4orf3Q8WVX3 66 aa13.69□□□□□ -0.22
PRPF40B-208ENST00000548436 RBMY1A1P0DJD3 496 aaKnown RBP13.68□□□□□ -0.22
PRPF40B-208ENST00000548436 RBMY1CP0DJD4 496 aa13.68□□□□□ -0.22
PRPF40B-208ENST00000548436 PLNP26678 52 aa13.68□□□□□ -0.22
PRPF40B-208ENST00000548436 DEFB131AP59861 70 aa13.68□□□□□ -0.22
PRPF40B-208ENST00000548436 RBMY1FQ15415 496 aaKnown RBP13.68□□□□□ -0.22
PRPF40B-208ENST00000548436 HIST2H2BCQ6DN03 193 aa13.68□□□□□ -0.22
PRPF40B-208ENST00000548436 BAALCQ8WXS3 180 aa13.68□□□□□ -0.22
PRPF40B-208ENST00000548436 KHDC1LQ5JSQ8 128 aa13.68□□□□□ -0.22
PRPF40B-208ENST00000548436 CHTOPQ9Y3Y2 248 aaKnown RBP13.68□□□□□ -0.22
PRPF40B-208ENST00000548436 CRYGDP07320 174 aa13.67□□□□□ -0.22
PRPF40B-208ENST00000548436 SYT8Q8NBV8 401 aa13.67□□□□□ -0.22
PRPF40B-208ENST00000548436 SONP18583 2426 aaKnown RBP13.67□□□□□ -0.22
PRPF40B-208ENST00000548436 HLA-DRB4P13762 266 aa13.67□□□□□ -0.22
PRPF40B-208ENST00000548436 TMEM61Q8N0U2 210 aa13.67□□□□□ -0.22
PRPF40B-208ENST00000548436 DLX4Q92988 240 aaPredicted RBP13.67□□□□□ -0.22
PRPF40B-208ENST00000548436 HIGD1BQ9P298 99 aa13.67□□□□□ -0.22
PRPF40B-208ENST00000548436 HLA-DRB4X5D2U9 266 aa13.67□□□□□ -0.22
PRPF40B-208ENST00000548436 TRBV25-1A0A075B6N4 114 aa13.66□□□□□ -0.22
PRPF40B-208ENST00000548436 TRAV8-6A0A0B4J262 113 aa13.66□□□□□ -0.22
PRPF40B-208ENST00000548436 ZFP2Q6ZN57 461 aa13.66□□□□□ -0.22
PRPF40B-208ENST00000548436 Q6ZSV7 163 aa13.66□□□□□ -0.22
PRPF40B-208ENST00000548436 MAPKAPK5-AS1Q8N8E1 139 aa13.66□□□□□ -0.22
PRPF40B-208ENST00000548436 PEMTQ9UBM1 199 aa13.66□□□□□ -0.22
PRPF40B-208ENST00000548436 SDHAF1A6NFY7 115 aa13.65□□□□□ -0.22
PRPF40B-208ENST00000548436 AMMECR1LQ6DCA0 310 aa13.65□□□□□ -0.22
PRPF40B-208ENST00000548436 MORN3Q6PF18 240 aaPredicted RBP13.65□□□□□ -0.22
PRPF40B-208ENST00000548436 KLHL30-AS1Q8NEE0 82 aa13.65□□□□□ -0.22
PRPF40B-208ENST00000548436 CUBNO60494 3623 aa13.65□□□□□ -0.22
PRPF40B-208ENST00000548436 A6NDN8 102 aa13.65□□□□□ -0.22
PRPF40B-208ENST00000548436 VCYO14598 125 aa13.65□□□□□ -0.22
PRPF40B-208ENST00000548436 TMEM86BQ8N661 226 aa13.65□□□□□ -0.22
PRPF40B-208ENST00000548436 TRBV6-5A0A0K0K1A5 114 aa13.64□□□□□ -0.23
PRPF40B-208ENST00000548436 RBMY1BA6NDE4 496 aaKnown RBP13.64□□□□□ -0.23
PRPF40B-208ENST00000548436 RBMY1EA6NEQ0 496 aaKnown RBP13.64□□□□□ -0.23
PRPF40B-208ENST00000548436 PRSS29PA6NIE9 313 aa13.64□□□□□ -0.23
PRPF40B-208ENST00000548436 A8MTW9 85 aa13.64□□□□□ -0.23
PRPF40B-208ENST00000548436 H3BMM0 161 aa13.64□□□□□ -0.23
PRPF40B-208ENST00000548436 M0QY20 66 aa13.64□□□□□ -0.23
PRPF40B-208ENST00000548436 RBMY1DP0C7P1 496 aaKnown RBP13.64□□□□□ -0.23
PRPF40B-208ENST00000548436 ZNF56Q15929 161 aa13.64□□□□□ -0.23
PRPF40B-208ENST00000548436 CHAC1Q9BUX1 264 aa13.64□□□□□ -0.23
PRPF40B-208ENST00000548436 CYSLTR1Q9Y271 337 aa13.64□□□□□ -0.23
PRPF40B-208ENST00000548436 TSHBP01222 138 aa13.63□□□□□ -0.23
PRPF40B-208ENST00000548436 ZNF876PQ49A33 203 aa13.63□□□□□ -0.23
PRPF40B-208ENST00000548436 TP53TG1Q9Y2A0 90 aa13.63□□□□□ -0.23
PRPF40B-208ENST00000548436 TRGV11A0A075B6L2 103 aa13.63□□□□□ -0.23
PRPF40B-208ENST00000548436 TRBV27A0A0K0K1C4 114 aa13.63□□□□□ -0.23
PRPF40B-208ENST00000548436 DNAJC9-AS1A6NH13 148 aa13.63□□□□□ -0.23
PRPF40B-208ENST00000548436 H3BRM9 83 aa13.63□□□□□ -0.23
PRPF40B-208ENST00000548436 KIR2DL4Q99706 377 aa13.63□□□□□ -0.23
PRPF40B-208ENST00000548436 TRAV2A0A0B4J234 112 aa13.62□□□□□ -0.23
PRPF40B-208ENST00000548436 RPL39P62891 51 aaKnown RBP13.62□□□□□ -0.23
PRPF40B-208ENST00000548436 FLNAP21333 2647 aaKnown RBP13.62□□□□□ -0.23
PRPF40B-208ENST00000548436 IGIPA6NJ69 53 aa13.62□□□□□ -0.23
PRPF40B-208ENST00000548436 K7EP13 123 aa13.62□□□□□ -0.23
PRPF40B-208ENST00000548436 HTN1P15515 57 aa13.62□□□□□ -0.23
PRPF40B-208ENST00000548436 OR4C5Q8NGB2 326 aa13.62□□□□□ -0.23
PRPF40B-208ENST00000548436 PRM2P04554 102 aa13.61□□□□□ -0.23
PRPF40B-208ENST00000548436 FXYD2P54710 66 aa13.6□□□□□ -0.23
PRPF40B-208ENST00000548436 DEFB114Q30KQ6 69 aa13.6□□□□□ -0.23
PRPF40B-208ENST00000548436 DYNLRB2Q8TF09 96 aa13.6□□□□□ -0.23
PRPF40B-208ENST00000548436 MAP6D1Q9H9H5 199 aa13.6□□□□□ -0.23
PRPF40B-208ENST00000548436 ESM1Q9NQ30 184 aa13.6□□□□□ -0.23
PRPF40B-208ENST00000548436 ZNF256Q9Y2P7 627 aaPredicted RBP13.6□□□□□ -0.23
PRPF40B-208ENST00000548436 CCDC168Q8NDH2 2452 aa13.6□□□□□ -0.23
PRPF40B-208ENST00000548436 C9orf118A6NHY6 69 aa13.6□□□□□ -0.23
PRPF40B-208ENST00000548436 GCSHP23434 173 aa13.6□□□□□ -0.23
PRPF40B-208ENST00000548436 NF1P21359 2839 aa13.6□□□□□ -0.23
PRPF40B-208ENST00000548436 RIPPLY3P57055 190 aa13.59□□□□□ -0.23
PRPF40B-208ENST00000548436 PDZD2O15018 2839 aa13.59□□□□□ -0.23
PRPF40B-208ENST00000548436 NACAE9PAV3 2078 aa13.59□□□□□ -0.23
PRPF40B-208ENST00000548436 CD300EQ496F6 205 aaPredicted RBP13.59□□□□□ -0.23
PRPF40B-208ENST00000548436 TRPT1Q86TN4 253 aaKnown RBP13.59□□□□□ -0.23
PRPF40B-208ENST00000548436 RAB37Q96AX2 223 aa13.59□□□□□ -0.23
PRPF40B-208ENST00000548436 JMJD8Q96S16 334 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms