RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 A0A1B0GXF2 115 aa6.03□□□□□ -1.44
VPS13D-211ENST00000543710 MP68P56378 58 aa6.03□□□□□ -1.44
VPS13D-211ENST00000543710 SPINK13Q1W4C9 94 aa6.03□□□□□ -1.44
VPS13D-211ENST00000543710 LINC00479Q96M42 142 aa6.03□□□□□ -1.44
VPS13D-211ENST00000543710 PSMG3-AS1Q96PY0 264 aa6.03□□□□□ -1.44
VPS13D-211ENST00000543710 IGKV1OR2-108A0A075B7D4 117 aa6.03□□□□□ -1.44
VPS13D-211ENST00000543710 A0A0U1RQV1 116 aa6.03□□□□□ -1.44
VPS13D-211ENST00000543710 SPTSSBQ8NFR3 76 aa6.03□□□□□ -1.44
VPS13D-211ENST00000543710 WFDC12Q8WWY7 111 aa6.03□□□□□ -1.44
VPS13D-211ENST00000543710 ODF3BA8MYP8 253 aa6.03□□□□□ -1.44
VPS13D-211ENST00000543710 TEX22C9J3V5 150 aa6.03□□□□□ -1.44
VPS13D-211ENST00000543710 C3orf84H3BNL1 204 aa6.03□□□□□ -1.44
VPS13D-211ENST00000543710 DOPEY2Q9Y3R5 2298 aa6.03□□□□□ -1.44
VPS13D-211ENST00000543710 SPG11Q96JI7 2443 aa6.03□□□□□ -1.44
VPS13D-211ENST00000543710 COX7A2LO14548 114 aa6.03□□□□□ -1.44
VPS13D-211ENST00000543710 TDRG1Q3Y452 100 aa6.03□□□□□ -1.44
VPS13D-211ENST00000543710 FAM167A-AS1Q96KT0 104 aa6.03□□□□□ -1.44
VPS13D-211ENST00000543710 AGPAT4-IT1Q9H0P7 198 aa6.03□□□□□ -1.44
VPS13D-211ENST00000543710 KLK9Q9UKQ9 250 aa6.03□□□□□ -1.44
VPS13D-211ENST00000543710 IGHV3OR16-8A0A075B7F1 116 aa6.03□□□□□ -1.44
VPS13D-211ENST00000543710 BRK1Q8WUW1 75 aa6.03□□□□□ -1.44
VPS13D-211ENST00000543710 F8WDY8 70 aa6.02□□□□□ -1.45
VPS13D-211ENST00000543710 NDUFB1O75438 58 aa6.02□□□□□ -1.45
VPS13D-211ENST00000543710 FXYD7P58549 80 aa6.02□□□□□ -1.45
VPS13D-211ENST00000543710 MIAQ16674 131 aa6.02□□□□□ -1.45
VPS13D-211ENST00000543710 FAM222AQ5U5X8 452 aa6.02□□□□□ -1.45
VPS13D-211ENST00000543710 ZNF503-AS2A6NEH8 195 aa6.02□□□□□ -1.45
VPS13D-211ENST00000543710 NDUFC1O43677 76 aa6.02□□□□□ -1.45
VPS13D-211ENST00000543710 IMUPQ9GZP8 106 aa6.02□□□□□ -1.45
VPS13D-211ENST00000543710 DKK2Q9UBU2 259 aa6.02□□□□□ -1.45
VPS13D-211ENST00000543710 CACNA1AO00555 2505 aa6.02□□□□□ -1.45
VPS13D-211ENST00000543710 FAM229AH3BQW9 127 aa6.02□□□□□ -1.45
VPS13D-211ENST00000543710 PI4KAP42356 2102 aa6.02□□□□□ -1.45
VPS13D-211ENST00000543710 FOXI1Q12951 378 aa6.02□□□□□ -1.45
VPS13D-211ENST00000543710 EIF4EBP1Q13541 118 aaPredicted RBP6.02□□□□□ -1.45
VPS13D-211ENST00000543710 Q6YL49 198 aa6.02□□□□□ -1.45
VPS13D-211ENST00000543710 OPRPNQ99935 248 aaPredicted RBP6.02□□□□□ -1.45
VPS13D-211ENST00000543710 Q9HAA7 133 aa6.02□□□□□ -1.45
VPS13D-211ENST00000543710 ZNRD1Q9P1U0 126 aa6.02□□□□□ -1.45
VPS13D-211ENST00000543710 A0A1B0GX51 115 aa6.01□□□□□ -1.45
VPS13D-211ENST00000543710 NDUFA1O15239 70 aa6.01□□□□□ -1.45
VPS13D-211ENST00000543710 LINC00643Q86TS7 51 aa6.01□□□□□ -1.45
VPS13D-211ENST00000543710 PCNX2A6NKB5 2137 aa6.01□□□□□ -1.45
VPS13D-211ENST00000543710 IGHV4-38-2P0DP08 117 aa6.01□□□□□ -1.45
VPS13D-211ENST00000543710 IGHV7-81A0A0B4J1V7 117 aa6.01□□□□□ -1.45
VPS13D-211ENST00000543710 TRAV26-2A0A0B4J265 109 aa6.01□□□□□ -1.45
VPS13D-211ENST00000543710 IGHV3-53P01767 116 aa6.01□□□□□ -1.45
VPS13D-211ENST00000543710 CKAP5Q14008 2032 aa6.01□□□□□ -1.45
VPS13D-211ENST00000543710 NDUFC2-KCTD14E9PQ53 114 aa6.01□□□□□ -1.45
VPS13D-211ENST00000543710 PSMB8P28062 276 aa6.01□□□□□ -1.45
VPS13D-211ENST00000543710 ZNF503Q96F45 646 aa6.01□□□□□ -1.45
VPS13D-211ENST00000543710 IGLV2-14P01704 120 aa6.01□□□□□ -1.45
VPS13D-211ENST00000543710 MLANAQ16655 118 aa6.01□□□□□ -1.45
VPS13D-211ENST00000543710 TMEM263Q8WUH6 116 aaKnown RBP6.01□□□□□ -1.45
VPS13D-211ENST00000543710 Q9H8V8 135 aa6.01□□□□□ -1.45
VPS13D-211ENST00000543710 PRB3Q04118 309 aaPredicted RBP6□□□□□ -1.45
VPS13D-211ENST00000543710 CLUHP3Q96NS8 147 aa6□□□□□ -1.45
VPS13D-211ENST00000543710 TRBV7-3A0A075B6L6 115 aa6□□□□□ -1.45
VPS13D-211ENST00000543710 SIRPDQ9H106 197 aa6□□□□□ -1.45
VPS13D-211ENST00000543710 SPTBP11277 2137 aa6□□□□□ -1.45
VPS13D-211ENST00000543710 NBASA2RRP1 2371 aa6□□□□□ -1.45
VPS13D-211ENST00000543710 A0A0J9YX75 114 aa6□□□□□ -1.45
VPS13D-211ENST00000543710 NTN5Q8WTR8 489 aaPredicted RBP6□□□□□ -1.45
VPS13D-211ENST00000543710 A6NDX4 124 aa5.99□□□□□ -1.45
VPS13D-211ENST00000543710 LYRM9A8MSI8 78 aa5.99□□□□□ -1.45
VPS13D-211ENST00000543710 TAX1BP3O14907 124 aa5.99□□□□□ -1.45
VPS13D-211ENST00000543710 MUSTN1Q8IVN3 82 aa5.99□□□□□ -1.45
VPS13D-211ENST00000543710 TPSG1Q9NRR2 321 aa5.99□□□□□ -1.45
VPS13D-211ENST00000543710 COL4A3Q01955 1670 aa5.99□□□□□ -1.45
VPS13D-211ENST00000543710 DEFB131BA0A096LNP1 70 aa5.99□□□□□ -1.45
VPS13D-211ENST00000543710 DENND4CQ5VZ89 1909 aa5.99□□□□□ -1.45
VPS13D-211ENST00000543710 NUP214P35658 2090 aaPredicted RBP5.99□□□□□ -1.45
VPS13D-211ENST00000543710 ETDCA0A1B0GVM5 59 aa5.99□□□□□ -1.45
VPS13D-211ENST00000543710 IGFL4Q6B9Z1 124 aa5.99□□□□□ -1.45
VPS13D-211ENST00000543710 DIRC1Q969H9 104 aa5.99□□□□□ -1.45
VPS13D-211ENST00000543710 CTSGP08311 255 aa5.99□□□□□ -1.45
VPS13D-211ENST00000543710 TIRAPP58753 221 aa5.99□□□□□ -1.45
VPS13D-211ENST00000543710 CTSZQ9UBR2 303 aa5.99□□□□□ -1.45
VPS13D-211ENST00000543710 PYGO1Q9Y3Y4 419 aa5.99□□□□□ -1.45
VPS13D-211ENST00000543710 TNRC6AQ8NDV7 1962 aaKnown RBP5.99□□□□□ -1.45
VPS13D-211ENST00000543710 CADP27708 2225 aa5.99□□□□□ -1.45
VPS13D-211ENST00000543710 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.99□□□□□ -1.457e-8■■■□□ 16.4
VPS13D-211ENST00000543710 DEFB135Q30KP9 77 aa5.99□□□□□ -1.45
VPS13D-211ENST00000543710 PATE2Q6UY27 113 aa5.99□□□□□ -1.45
VPS13D-211ENST00000543710 COL5A1P20908 1838 aaPredicted RBP5.98□□□□□ -1.45
VPS13D-211ENST00000543710 SND1-IT1Q9HBX3 110 aa5.98□□□□□ -1.45
VPS13D-211ENST00000543710 PTPN13Q12923 2485 aa5.98□□□□□ -1.45
VPS13D-211ENST00000543710 MRPS36P82909 103 aaKnown RBP5.98□□□□□ -1.45
VPS13D-211ENST00000543710 Q8N9W7 124 aa5.98□□□□□ -1.45
VPS13D-211ENST00000543710 TP73-AS1Q9UF72 201 aa5.98□□□□□ -1.45
VPS13D-211ENST00000543710 M0QXV9 152 aa5.98□□□□□ -1.45
VPS13D-211ENST00000543710 CRYGBP07316 175 aa5.98□□□□□ -1.45
VPS13D-211ENST00000543710 IGLC6P0CF74 106 aa5.98□□□□□ -1.45
VPS13D-211ENST00000543710 SPRY4Q9C004 299 aa5.98□□□□□ -1.45
VPS13D-211ENST00000543710 TRBV30A0A0K0K1B3 111 aa5.97□□□□□ -1.45
VPS13D-211ENST00000543710 IGLV1-47P01700 117 aa5.97□□□□□ -1.45
VPS13D-211ENST00000543710 EBI3Q14213 229 aa5.97□□□□□ -1.45
VPS13D-211ENST00000543710 FGF23Q9GZV9 251 aaPredicted RBP5.97□□□□□ -1.45
VPS13D-211ENST00000543710 ARID1AO14497 2285 aa5.97□□□□□ -1.45
VPS13D-211ENST00000543710 G3V318 75 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms