RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 WFDC1Q9HC57 220 aa12.92□□□□□ -0.34
SQSTM1-215ENST00000514093 GRIFINA4D1Z8 144 aa12.91□□□□□ -0.34
SQSTM1-215ENST00000514093 RPL36AP83881 106 aaKnown RBP12.91□□□□□ -0.34
SQSTM1-215ENST00000514093 RPL19P84098 196 aaKnown RBP12.91□□□□□ -0.34
SQSTM1-215ENST00000514093 SAPCD1Q5SSQ6 148 aa12.91□□□□□ -0.34
SQSTM1-215ENST00000514093 RPL36ALQ969Q0 106 aaKnown RBP12.91□□□□□ -0.34
SQSTM1-215ENST00000514093 EPDR1Q9UM22 224 aa12.91□□□□□ -0.34
SQSTM1-215ENST00000514093 TRBV6-8A0A0A6YYG3 113 aa12.9□□□□□ -0.34
SQSTM1-215ENST00000514093 TRAV34A0A0B4J273 112 aa12.9□□□□□ -0.34
SQSTM1-215ENST00000514093 FABP5P3A8MUU1 101 aa12.9□□□□□ -0.34
SQSTM1-215ENST00000514093 B4DEV8 164 aa12.9□□□□□ -0.34
SQSTM1-215ENST00000514093 CHTF8P0CG12 524 aa12.9□□□□□ -0.34
SQSTM1-215ENST00000514093 CLPSL2Q6UWE3 100 aa12.9□□□□□ -0.34
SQSTM1-215ENST00000514093 HSD17B11Q8NBQ5 300 aa12.9□□□□□ -0.34
SQSTM1-215ENST00000514093 OR11H4Q8NGC9 324 aa12.9□□□□□ -0.34
SQSTM1-215ENST00000514093 TRBV7-3A0A075B6L6 115 aa12.89□□□□□ -0.35
SQSTM1-215ENST00000514093 MIAQ16674 131 aa12.89□□□□□ -0.35
SQSTM1-215ENST00000514093 PPP1R1CQ8WVI7 109 aa12.89□□□□□ -0.35
SQSTM1-215ENST00000514093 SFRP2Q96HF1 295 aa12.89□□□□□ -0.35
SQSTM1-215ENST00000514093 A0A087WYN8 130 aa12.88□□□□□ -0.35
SQSTM1-215ENST00000514093 TRBV10-1A0A0K0K1A3 114 aa12.88□□□□□ -0.35
SQSTM1-215ENST00000514093 M0R036 132 aa12.88□□□□□ -0.35
SQSTM1-215ENST00000514093 M0R381 172 aa12.88□□□□□ -0.35
SQSTM1-215ENST00000514093 RPL12P30050 165 aaKnown RBP12.88□□□□□ -0.35
SQSTM1-215ENST00000514093 CDC34P49427 236 aaPredicted RBP12.88□□□□□ -0.35
SQSTM1-215ENST00000514093 CIRBPQ14011 172 aaKnown RBP12.88□□□□□ -0.35
SQSTM1-215ENST00000514093 KRTAP26-1Q6PEX3 210 aa12.88□□□□□ -0.35
SQSTM1-215ENST00000514093 CHCHD5Q9BSY4 110 aa12.88□□□□□ -0.35
SQSTM1-215ENST00000514093 GAS8-AS1O95177 125 aa12.87□□□□□ -0.35
SQSTM1-215ENST00000514093 STAG3L2P0CL84 134 aa12.87□□□□□ -0.35
SQSTM1-215ENST00000514093 STAG3L3P0CL85 134 aa12.87□□□□□ -0.35
SQSTM1-215ENST00000514093 GCHFRP30047 84 aa12.87□□□□□ -0.35
SQSTM1-215ENST00000514093 CYCSP99999 105 aaKnown RBP12.87□□□□□ -0.35
SQSTM1-215ENST00000514093 LINC01600Q96MT4 127 aa12.87□□□□□ -0.35
SQSTM1-215ENST00000514093 ARL2-SNX15V9GYD0 113 aa12.87□□□□□ -0.35
SQSTM1-215ENST00000514093 KRBOX1C9JBD0 128 aa12.86□□□□□ -0.35
SQSTM1-215ENST00000514093 PHOX2AO14813 284 aa12.86□□□□□ -0.35
SQSTM1-215ENST00000514093 PTTG1O95997 202 aa12.86□□□□□ -0.35
SQSTM1-215ENST00000514093 H2BFSP57053 126 aa12.86□□□□□ -0.35
SQSTM1-215ENST00000514093 SUN5Q8TC36 379 aa12.86□□□□□ -0.35
SQSTM1-215ENST00000514093 PHLDA3Q9Y5J5 127 aa12.86□□□□□ -0.35
SQSTM1-215ENST00000514093 CRIP1P50238 77 aa12.85□□□□□ -0.35
SQSTM1-215ENST00000514093 LINC00269Q8N2A0 174 aa12.85□□□□□ -0.35
SQSTM1-215ENST00000514093 RAB24Q969Q5 203 aa12.85□□□□□ -0.35
SQSTM1-215ENST00000514093 hDV102S1A0JD36 115 aa12.84□□□□□ -0.35
SQSTM1-215ENST00000514093 MPC2O95563 127 aa12.84□□□□□ -0.35
SQSTM1-215ENST00000514093 TMSB15BA0A087X1C1 80 aa12.83□□□□□ -0.36
SQSTM1-215ENST00000514093 DNLZQ5SXM8 178 aa12.83□□□□□ -0.36
SQSTM1-215ENST00000514093 CLRN3Q8NCR9 226 aa12.83□□□□□ -0.36
SQSTM1-215ENST00000514093 OR10G8Q8NGN5 311 aa12.83□□□□□ -0.36
SQSTM1-215ENST00000514093 PRR34Q9NV39 138 aa12.83□□□□□ -0.36
SQSTM1-215ENST00000514093 IGLV10-54A0A075B6I4 117 aa12.82□□□□□ -0.36
SQSTM1-215ENST00000514093 IGHV3-64A0A075B6Q5 118 aa12.82□□□□□ -0.36
SQSTM1-215ENST00000514093 SLPIP03973 132 aa12.82□□□□□ -0.36
SQSTM1-215ENST00000514093 TPT1P13693 172 aaKnown RBP12.82□□□□□ -0.36
SQSTM1-215ENST00000514093 CNBPP62633 177 aaKnown RBP12.82□□□□□ -0.36
SQSTM1-215ENST00000514093 RBX1P62877 108 aa12.82□□□□□ -0.36
SQSTM1-215ENST00000514093 MZT2BQ6NZ67 158 aa12.82□□□□□ -0.36
SQSTM1-215ENST00000514093 NEXN-AS1Q8NBZ9 246 aa12.82□□□□□ -0.36
SQSTM1-215ENST00000514093 SPACA4Q8TDM5 124 aa12.82□□□□□ -0.36
SQSTM1-215ENST00000514093 KIF25-AS1Q9Y6Z4 181 aa12.82□□□□□ -0.36
SQSTM1-215ENST00000514093 SH2D1AO60880 128 aa12.81□□□□□ -0.36
SQSTM1-215ENST00000514093 GAGE6Q13070 117 aa12.81□□□□□ -0.36
SQSTM1-215ENST00000514093 NTM-AS1Q6ZSK4 140 aa12.81□□□□□ -0.36
SQSTM1-215ENST00000514093 RNF185Q96GF1 192 aa12.81□□□□□ -0.36
SQSTM1-215ENST00000514093 Q86TA4 180 aa12.8□□□□□ -0.36
SQSTM1-215ENST00000514093 C7orf33Q8WU49 177 aa12.8□□□□□ -0.36
SQSTM1-215ENST00000514093 TMEM167BQ9NRX6 74 aa12.8□□□□□ -0.36
SQSTM1-215ENST00000514093 ZNF56Q15929 161 aa12.79□□□□□ -0.36
SQSTM1-215ENST00000514093 ZFP82Q8N141 532 aa12.79□□□□□ -0.36
SQSTM1-215ENST00000514093 GTSF1Q8WW33 167 aa12.79□□□□□ -0.36
SQSTM1-215ENST00000514093 CCDC32Q9BV29 185 aa12.79□□□□□ -0.36
SQSTM1-215ENST00000514093 PLAC8Q9NZF1 115 aa12.79□□□□□ -0.36
SQSTM1-215ENST00000514093 LPAP08519 4548 aa12.78□□□□□ -0.36
SQSTM1-215ENST00000514093 A0A0J9YXV3 536 aa12.78□□□□□ -0.36
SQSTM1-215ENST00000514093 CXorf1O96002 111 aa12.78□□□□□ -0.36
SQSTM1-215ENST00000514093 IFNA7P01567 189 aa12.78□□□□□ -0.36
SQSTM1-215ENST00000514093 PET100P0DJ07 73 aa12.78□□□□□ -0.36
SQSTM1-215ENST00000514093 RAB4BP61018 213 aa12.78□□□□□ -0.36
SQSTM1-215ENST00000514093 PKIAP61925 76 aa12.78□□□□□ -0.36
SQSTM1-215ENST00000514093 KRTAP10-8P60410 259 aa12.77□□□□□ -0.37
SQSTM1-215ENST00000514093 AP5S1Q9NUS5 200 aa12.77□□□□□ -0.37
SQSTM1-215ENST00000514093 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.76□□□□□ -0.37
SQSTM1-215ENST00000514093 RAB5CP51148 216 aa12.76□□□□□ -0.37
SQSTM1-215ENST00000514093 UBE2G2P60604 165 aa12.76□□□□□ -0.37
SQSTM1-215ENST00000514093 PRR27Q6MZM9 219 aa12.76□□□□□ -0.37
SQSTM1-215ENST00000514093 WDR73Q6P4I2 378 aa12.76□□□□□ -0.37
SQSTM1-215ENST00000514093 ENKURQ8TC29 256 aa12.76□□□□□ -0.37
SQSTM1-215ENST00000514093 A0A1W2PRE2 83 aa12.75□□□□□ -0.37
SQSTM1-215ENST00000514093 PEX7O00628 323 aa12.75□□□□□ -0.37
SQSTM1-215ENST00000514093 PRR3P79522 188 aaKnown RBP12.75□□□□□ -0.37
SQSTM1-215ENST00000514093 REG3AQ06141 175 aa12.75□□□□□ -0.37
SQSTM1-215ENST00000514093 FAM162BQ5T6X4 162 aa12.75□□□□□ -0.37
SQSTM1-215ENST00000514093 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.75□□□□□ -0.37
SQSTM1-215ENST00000514093 DERL1Q9BUN8 251 aa12.75□□□□□ -0.37
SQSTM1-215ENST00000514093 ATP6V0CP27449 155 aa12.74□□□□□ -0.37
SQSTM1-215ENST00000514093 MUC21A0A0G2JKD1 596 aa12.73□□□□□ -0.37
SQSTM1-215ENST00000514093 INMT-MINDY4F8WBC2 141 aa12.73□□□□□ -0.37
SQSTM1-215ENST00000514093 LINC01559Q495D7 138 aa12.73□□□□□ -0.37
SQSTM1-215ENST00000514093 LYPD6BQ8NI32 183 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms