RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 NUDT11Q96G61 164 aa6.39□□□□□ -1.39
NUP54-207ENST00000508583 TPPP3Q9BW30 176 aa6.39□□□□□ -1.39
NUP54-207ENST00000508583 RYR3Q15413 4870 aa6.39□□□□□ -1.39
NUP54-207ENST00000508583 PLECQ15149 4684 aaKnown RBP6.38□□□□□ -1.39
NUP54-207ENST00000508583 TRGC1P0CF51 173 aa6.38□□□□□ -1.39
NUP54-207ENST00000508583 FAM74A4Q5TZK3 123 aa6.38□□□□□ -1.39
NUP54-207ENST00000508583 WDR73Q6P4I2 378 aa6.38□□□□□ -1.39
NUP54-207ENST00000508583 UQCC3Q6UW78 93 aa6.38□□□□□ -1.39
NUP54-207ENST00000508583 NEGR1Q7Z3B1 354 aa6.38□□□□□ -1.39
NUP54-207ENST00000508583 SFRP2Q96HF1 295 aa6.38□□□□□ -1.39
NUP54-207ENST00000508583 VSIG2Q96IQ7 327 aa6.38□□□□□ -1.39
NUP54-207ENST00000508583 RNASE7Q9H1E1 156 aaKnown RBP6.38□□□□□ -1.39
NUP54-207ENST00000508583 OSTCQ9NRP0 149 aa6.38□□□□□ -1.39
NUP54-207ENST00000508583 A0A096LPF7 62 aa6.37□□□□□ -1.39
NUP54-207ENST00000508583 FAM231BA6NCW3 169 aa6.37□□□□□ -1.39
NUP54-207ENST00000508583 IGLC6P0CF74 106 aa6.37□□□□□ -1.39
NUP54-207ENST00000508583 GYPEP15421 78 aa6.37□□□□□ -1.39
NUP54-207ENST00000508583 CTRLP40313 264 aa6.37□□□□□ -1.39
NUP54-207ENST00000508583 PNRC1Q12796 327 aaPredicted RBP6.37□□□□□ -1.39
NUP54-207ENST00000508583 ADIRFQ15847 76 aa6.37□□□□□ -1.39
NUP54-207ENST00000508583 SMIM15Q7Z3B0 74 aa6.37□□□□□ -1.39
NUP54-207ENST00000508583 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.37□□□□□ -1.39
NUP54-207ENST00000508583 OR10AG1Q8NH19 301 aa6.37□□□□□ -1.39
NUP54-207ENST00000508583 GFRA4Q9GZZ7 299 aa6.37□□□□□ -1.39
NUP54-207ENST00000508583 ALMS1Q8TCU4 4167 aa6.36□□□□□ -1.39
NUP54-207ENST00000508583 IGHV3-73A0A0B4J1V6 119 aa6.36□□□□□ -1.39
NUP54-207ENST00000508583 TRBV10-1A0A0K0K1A3 114 aa6.36□□□□□ -1.39
NUP54-207ENST00000508583 K7EQD1 137 aa6.36□□□□□ -1.39
NUP54-207ENST00000508583 RAB4BP61018 213 aa6.36□□□□□ -1.39
NUP54-207ENST00000508583 IFITM2Q01629 132 aa6.36□□□□□ -1.39
NUP54-207ENST00000508583 ZNF575Q86XF7 245 aa6.36□□□□□ -1.39
NUP54-207ENST00000508583 SLC25A29Q8N8R3 303 aa6.36□□□□□ -1.39
NUP54-207ENST00000508583 ISOC2Q96AB3 205 aa6.36□□□□□ -1.39
NUP54-207ENST00000508583 CNFNQ9BYD5 112 aa6.36□□□□□ -1.39
NUP54-207ENST00000508583 NACAE9PAV3 2078 aa6.36□□□□□ -1.39
NUP54-207ENST00000508583 A0A087WWL8 130 aa6.35□□□□□ -1.39
NUP54-207ENST00000508583 C9JQL5 133 aa6.35□□□□□ -1.39
NUP54-207ENST00000508583 H7C1H1 209 aa6.35□□□□□ -1.39
NUP54-207ENST00000508583 GZMBP10144 247 aa6.35□□□□□ -1.39
NUP54-207ENST00000508583 RPL23P62829 140 aaKnown RBP6.35□□□□□ -1.39
NUP54-207ENST00000508583 ZNF56Q15929 161 aa6.35□□□□□ -1.39
NUP54-207ENST00000508583 LCE3BQ5TA77 95 aa6.35□□□□□ -1.39
NUP54-207ENST00000508583 UFSP1Q6NVU6 142 aa6.35□□□□□ -1.39
NUP54-207ENST00000508583 LYZL1Q6UWQ5 148 aa6.35□□□□□ -1.39
NUP54-207ENST00000508583 OR10G8Q8NGN5 311 aa6.35□□□□□ -1.39
NUP54-207ENST00000508583 TSKUQ8WUA8 353 aa6.35□□□□□ -1.39
NUP54-207ENST00000508583 KRTAP4-12Q9BQ66 201 aa6.35□□□□□ -1.39
NUP54-207ENST00000508583 UPK3BQ9BT76 320 aa6.35□□□□□ -1.39
NUP54-207ENST00000508583 KRTAP9-9Q9BYP9 154 aa6.35□□□□□ -1.39
NUP54-207ENST00000508583 KRTAP9-4Q9BYQ2 154 aa6.35□□□□□ -1.39
NUP54-207ENST00000508583 MRPS16Q9Y3D3 137 aaKnown RBP6.35□□□□□ -1.39
NUP54-207ENST00000508583 SACSQ9NZJ4 4579 aa6.35□□□□□ -1.39
NUP54-207ENST00000508583 RYR2Q92736 4967 aa6.35□□□□□ -1.39
NUP54-207ENST00000508583 A6NJY4 79 aa6.34□□□□□ -1.39
NUP54-207ENST00000508583 F5H697 171 aa6.34□□□□□ -1.39
NUP54-207ENST00000508583 PPP1R2P9O14990 202 aa6.34□□□□□ -1.39
NUP54-207ENST00000508583 CRYGDP07320 174 aa6.34□□□□□ -1.39
NUP54-207ENST00000508583 TIRAPP58753 221 aa6.34□□□□□ -1.39
NUP54-207ENST00000508583 RPL36AP83881 106 aaKnown RBP6.34□□□□□ -1.39
NUP54-207ENST00000508583 SRSF3P84103 164 aaKnown RBP6.34□□□□□ -1.39
NUP54-207ENST00000508583 TWIST1Q15672 202 aa6.34□□□□□ -1.39
NUP54-207ENST00000508583 TTC32Q5I0X7 151 aa6.34□□□□□ -1.39
NUP54-207ENST00000508583 RPL36ALQ969Q0 106 aaKnown RBP6.34□□□□□ -1.39
NUP54-207ENST00000508583 SAMD10Q9BYL1 202 aa6.34□□□□□ -1.39
NUP54-207ENST00000508583 JPT2Q9H910 190 aa6.34□□□□□ -1.39
NUP54-207ENST00000508583 LINC00588Q9Y4M8 146 aa6.34□□□□□ -1.39
NUP54-207ENST00000508583 MUC21A0A0G2JKD1 596 aa6.33□□□□□ -1.4
NUP54-207ENST00000508583 MUC21A0A140T8X8 626 aa6.33□□□□□ -1.4
NUP54-207ENST00000508583 HIGD1CA8MV81 97 aa6.33□□□□□ -1.4
NUP54-207ENST00000508583 K7EP13 123 aa6.33□□□□□ -1.4
NUP54-207ENST00000508583 NTF3P20783 257 aa6.33□□□□□ -1.4
NUP54-207ENST00000508583 FOXA3P55318 350 aaPredicted RBP6.33□□□□□ -1.4
NUP54-207ENST00000508583 SSTP61278 116 aa6.33□□□□□ -1.4
NUP54-207ENST00000508583 ESRGQ1W209 222 aa6.33□□□□□ -1.4
NUP54-207ENST00000508583 C14orf178Q8N769 122 aaPredicted RBP6.33□□□□□ -1.4
NUP54-207ENST00000508583 ATP6V0E2Q8NHE4 81 aa6.33□□□□□ -1.4
NUP54-207ENST00000508583 DPH3P1Q9H4G8 78 aa6.33□□□□□ -1.4
NUP54-207ENST00000508583 NAT8BQ9UHF3 227 aa6.33□□□□□ -1.4
NUP54-207ENST00000508583 DNAH1Q9P2D7 4330 aa6.33□□□□□ -1.4
NUP54-207ENST00000508583 TRBV7-3A0A075B6L6 115 aa6.32□□□□□ -1.4
NUP54-207ENST00000508583 TRAV9-2A0A087WT02 112 aa6.32□□□□□ -1.4
NUP54-207ENST00000508583 A0A087WWC5 75 aa6.32□□□□□ -1.4
NUP54-207ENST00000508583 TRAV8-6A0A0B4J262 113 aa6.32□□□□□ -1.4
NUP54-207ENST00000508583 A0A1B0GUT8 65 aa6.32□□□□□ -1.4
NUP54-207ENST00000508583 MT-ND4LP03901 98 aa6.32□□□□□ -1.4
NUP54-207ENST00000508583 MGPP08493 103 aa6.32□□□□□ -1.4
NUP54-207ENST00000508583 RIGQ13278 110 aa6.32□□□□□ -1.4
NUP54-207ENST00000508583 LYPD5Q6UWN5 251 aa6.32□□□□□ -1.4
NUP54-207ENST00000508583 COMMD7Q86VX2 200 aa6.32□□□□□ -1.4
NUP54-207ENST00000508583 GTSF1Q8WW33 167 aa6.32□□□□□ -1.4
NUP54-207ENST00000508583 PGLYRP4Q96LB8 373 aa6.32□□□□□ -1.4
NUP54-207ENST00000508583 GTSF1LQ9H1H1 148 aa6.32□□□□□ -1.4
NUP54-207ENST00000508583 Q9H8V8 135 aa6.32□□□□□ -1.4
NUP54-207ENST00000508583 V9GYV3 84 aa6.32□□□□□ -1.4
NUP54-207ENST00000508583 HYDINQ4G0P3 5121 aa6.32□□□□□ -1.4
NUP54-207ENST00000508583 A0A1B0GW15 77 aa6.31□□□□□ -1.4
NUP54-207ENST00000508583 GAGE12JA6NER3 117 aa6.31□□□□□ -1.4
NUP54-207ENST00000508583 SIVA1O15304 175 aa6.31□□□□□ -1.4
NUP54-207ENST00000508583 S100A8P05109 93 aa6.31□□□□□ -1.4
NUP54-207ENST00000508583 BTF3P20290 206 aaKnown RBP6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms