RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 IGLL5B9A064 214 aa12.73□□□□□ -0.37
PCDHA1-203ENST00000504120 MSMPQ1L6U9 139 aa12.73□□□□□ -0.37
PCDHA1-203ENST00000504120 MRPL36Q9P0J6 103 aaKnown RBP12.73□□□□□ -0.37
PCDHA1-203ENST00000504120 ZGRF1Q86YA3 2104 aa12.73□□□□□ -0.37
PCDHA1-203ENST00000504120 MED13LQ71F56 2210 aa12.72□□□□□ -0.37
PCDHA1-203ENST00000504120 CGB7P0DN87 165 aa12.72□□□□□ -0.37
PCDHA1-203ENST00000504120 PKIGQ9Y2B9 76 aa12.72□□□□□ -0.37
PCDHA1-203ENST00000504120 ZFHX2Q9C0A1 2572 aaPredicted RBP12.72□□□□□ -0.37
PCDHA1-203ENST00000504120 TOMM6Q96B49 74 aa12.72□□□□□ -0.37
PCDHA1-203ENST00000504120 ZNF503Q96F45 646 aa12.72□□□□□ -0.37
PCDHA1-203ENST00000504120 KIAA1549LQ6ZVL6 1849 aa12.72□□□□□ -0.37
PCDHA1-203ENST00000504120 C15orf53Q8NAA6 179 aa12.71□□□□□ -0.37
PCDHA1-203ENST00000504120 EP400Q96L91 3159 aa12.71□□□□□ -0.37
PCDHA1-203ENST00000504120 H0YGX0 51 aa12.71□□□□□ -0.37
PCDHA1-203ENST00000504120 COX7A2LO14548 114 aa12.71□□□□□ -0.37
PCDHA1-203ENST00000504120 ACYP1P07311 99 aa12.71□□□□□ -0.37
PCDHA1-203ENST00000504120 UBE2BP63146 152 aa12.71□□□□□ -0.37
PCDHA1-203ENST00000504120 TIMM17AQ99595 171 aa12.71□□□□□ -0.37
PCDHA1-203ENST00000504120 MUSTN1Q8IVN3 82 aa12.71□□□□□ -0.38
PCDHA1-203ENST00000504120 KMT2EQ8IZD2 1858 aa12.71□□□□□ -0.38
PCDHA1-203ENST00000504120 P0C879 139 aa12.7□□□□□ -0.38
PCDHA1-203ENST00000504120 HIGD1BQ9P298 99 aa12.7□□□□□ -0.38
PCDHA1-203ENST00000504120 SND1-IT1Q9HBX3 110 aa12.7□□□□□ -0.38
PCDHA1-203ENST00000504120 TRBV7-3A0A075B6L6 115 aa12.7□□□□□ -0.38
PCDHA1-203ENST00000504120 CRYBA4P53673 196 aa12.7□□□□□ -0.38
PCDHA1-203ENST00000504120 FANCD2OSQ96PS1 177 aa12.7□□□□□ -0.38
PCDHA1-203ENST00000504120 Q9HAA7 133 aa12.7□□□□□ -0.38
PCDHA1-203ENST00000504120 TMEM131Q92545 1883 aa12.7□□□□□ -0.38
PCDHA1-203ENST00000504120 PRB1P04280 392 aa12.69□□□□□ -0.38
PCDHA1-203ENST00000504120 CAMK2N2Q96S95 79 aa12.69□□□□□ -0.38
PCDHA1-203ENST00000504120 COX7B2Q8TF08 81 aa12.69□□□□□ -0.38
PCDHA1-203ENST00000504120 C4orf3Q8WVX3 66 aa12.69□□□□□ -0.38
PCDHA1-203ENST00000504120 A4D1N5 150 aa12.69□□□□□ -0.38
PCDHA1-203ENST00000504120 MYCNOSP40205 109 aa12.69□□□□□ -0.38
PCDHA1-203ENST00000504120 LINC00574Q9H8X3 128 aa12.69□□□□□ -0.38
PCDHA1-203ENST00000504120 BAALCQ8WXS3 180 aa12.69□□□□□ -0.38
PCDHA1-203ENST00000504120 C19orf71A6NCJ1 209 aa12.68□□□□□ -0.38
PCDHA1-203ENST00000504120 TRACP01848 142 aa12.68□□□□□ -0.38
PCDHA1-203ENST00000504120 TDRG1Q3Y452 100 aa12.68□□□□□ -0.38
PCDHA1-203ENST00000504120 NRGNQ92686 78 aa12.68□□□□□ -0.38
PCDHA1-203ENST00000504120 RPL39P62891 51 aaKnown RBP12.68□□□□□ -0.38
PCDHA1-203ENST00000504120 MRAPQ8TCY5 172 aa12.68□□□□□ -0.38
PCDHA1-203ENST00000504120 HIST2H2BCQ6DN03 193 aa12.68□□□□□ -0.38
PCDHA1-203ENST00000504120 Q8NA96 180 aa12.68□□□□□ -0.38
PCDHA1-203ENST00000504120 A6NDX4 124 aa12.67□□□□□ -0.38
PCDHA1-203ENST00000504120 CITED1Q99966 193 aa12.67□□□□□ -0.38
PCDHA1-203ENST00000504120 E9PLD3 99 aa12.67□□□□□ -0.38
PCDHA1-203ENST00000504120 WISP2O76076 250 aa12.67□□□□□ -0.38
PCDHA1-203ENST00000504120 MUC6Q6W4X9 2439 aa12.67□□□□□ -0.38
PCDHA1-203ENST00000504120 hADV29S1A0JD25 119 aa12.67□□□□□ -0.38
PCDHA1-203ENST00000504120 NCKAP5O14513 1909 aa12.66□□□□□ -0.38
PCDHA1-203ENST00000504120 IGKV1D-37A0A075B6S9 117 aa12.66□□□□□ -0.38
PCDHA1-203ENST00000504120 IGLV10-54A0A075B6I4 117 aa12.66□□□□□ -0.38
PCDHA1-203ENST00000504120 ETDCA0A1B0GVM5 59 aa12.66□□□□□ -0.38
PCDHA1-203ENST00000504120 CCL18P55774 89 aa12.66□□□□□ -0.38
PCDHA1-203ENST00000504120 HHLA3Q9XRX5 114 aa12.66□□□□□ -0.38
PCDHA1-203ENST00000504120 C11orf86A6NJI1 115 aa12.65□□□□□ -0.38
PCDHA1-203ENST00000504120 A0A0J9YX75 114 aa12.65□□□□□ -0.38
PCDHA1-203ENST00000504120 RPL18AQ02543 176 aaKnown RBP12.65□□□□□ -0.38
PCDHA1-203ENST00000504120 MUC22E2RYF6 1773 aaPredicted RBP12.65□□□□□ -0.38
PCDHA1-203ENST00000504120 UNQ9165/PRO28630Q6UXU0 137 aa12.65□□□□□ -0.39
PCDHA1-203ENST00000504120 DEFB105AQ8NG35 78 aa12.64□□□□□ -0.39
PCDHA1-203ENST00000504120 ODF3BA8MYP8 253 aa12.64□□□□□ -0.39
PCDHA1-203ENST00000504120 FXYD2P54710 66 aa12.64□□□□□ -0.39
PCDHA1-203ENST00000504120 OPRPNQ99935 248 aaPredicted RBP12.64□□□□□ -0.39
PCDHA1-203ENST00000504120 IGHV3-30P01768 117 aa12.63□□□□□ -0.39
PCDHA1-203ENST00000504120 IGHV3-33P01772 117 aa12.63□□□□□ -0.39
PCDHA1-203ENST00000504120 IGHV3-30-3P0DP02 117 aa12.63□□□□□ -0.39
PCDHA1-203ENST00000504120 IGHV3-30-5P0DP03 117 aa12.63□□□□□ -0.39
PCDHA1-203ENST00000504120 DENND4AQ7Z401 1863 aa12.63□□□□□ -0.39
PCDHA1-203ENST00000504120 C10orf142B7Z368 130 aa12.63□□□□□ -0.39
PCDHA1-203ENST00000504120 FUSP35637 526 aaKnown RBP eCLIP12.63□□□□□ -0.39
PCDHA1-203ENST00000504120 VSIG2Q96IQ7 327 aa12.63□□□□□ -0.39
PCDHA1-203ENST00000504120 SPANXCQ9NY87 97 aa12.63□□□□□ -0.39
PCDHA1-203ENST00000504120 H3BQ85 93 aa12.62□□□□□ -0.39
PCDHA1-203ENST00000504120 ODF1Q14990 250 aa12.62□□□□□ -0.39
PCDHA1-203ENST00000504120 ADAMTS9Q9P2N4 1935 aa12.62□□□□□ -0.39
PCDHA1-203ENST00000504120 TNFRSF13BO14836 293 aaPredicted RBP12.62□□□□□ -0.39
PCDHA1-203ENST00000504120 TRBV12-3P01733 135 aa12.62□□□□□ -0.39
PCDHA1-203ENST00000504120 CXCL5P42830 114 aa12.62□□□□□ -0.39
PCDHA1-203ENST00000504120 PROP1O75360 226 aa12.62□□□□□ -0.39
PCDHA1-203ENST00000504120 LINC01620Q4KN68 170 aa12.62□□□□□ -0.39
PCDHA1-203ENST00000504120 DEFB1P60022 68 aa12.61□□□□□ -0.39
PCDHA1-203ENST00000504120 CLPSL1A2RUU4 121 aa12.61□□□□□ -0.39
PCDHA1-203ENST00000504120 FRMD6-AS1P0C7T7 363 aa12.61□□□□□ -0.39
PCDHA1-203ENST00000504120 TMEM61Q8N0U2 210 aa12.61□□□□□ -0.39
PCDHA1-203ENST00000504120 NDUFA1O15239 70 aa12.61□□□□□ -0.39
PCDHA1-203ENST00000504120 C20orf203Q8NBC4 194 aa12.61□□□□□ -0.39
PCDHA1-203ENST00000504120 TTTY13Q9BZ97 58 aa12.61□□□□□ -0.39
PCDHA1-203ENST00000504120 BRWD1-AS2P59051 145 aa12.61□□□□□ -0.39
PCDHA1-203ENST00000504120 CCDC140Q96MF4 163 aa12.61□□□□□ -0.39
PCDHA1-203ENST00000504120 MDFICQ9P1T7 246 aa12.61□□□□□ -0.39
PCDHA1-203ENST00000504120 TMEM263Q8WUH6 116 aaKnown RBP12.6□□□□□ -0.39
PCDHA1-203ENST00000504120 A0A1B0GXF2 115 aa12.6□□□□□ -0.39
PCDHA1-203ENST00000504120 LMO4P61968 165 aa12.6□□□□□ -0.39
PCDHA1-203ENST00000504120 TEN1Q86WV5 123 aa12.6□□□□□ -0.39
PCDHA1-203ENST00000504120 FAM208BQ5VWN6 2430 aa12.6□□□□□ -0.39
PCDHA1-203ENST00000504120 IGHV4-4A0A075B6R2 117 aa12.59□□□□□ -0.39
PCDHA1-203ENST00000504120 FSTL3O95633 263 aa12.59□□□□□ -0.39
PCDHA1-203ENST00000504120 TRBV10-1A0A0K0K1A3 114 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms