RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 CRYGDP07320 174 aa16.7■□□□□ 0.26
UPF3A-209ENST00000492270 MED14OSP0DP75 135 aa16.7■□□□□ 0.26
UPF3A-209ENST00000492270 BCL2P10415 239 aa16.7■□□□□ 0.26
UPF3A-209ENST00000492270 OR10J3Q5JRS4 329 aa16.7■□□□□ 0.26
UPF3A-209ENST00000492270 SPATA12Q7Z6I5 190 aa16.7■□□□□ 0.26
UPF3A-209ENST00000492270 OR10AG1Q8NH19 301 aa16.7■□□□□ 0.26
UPF3A-209ENST00000492270 IGHV3-38A0A0C4DH36 116 aa16.69■□□□□ 0.26
UPF3A-209ENST00000492270 C16orf90A8MZG2 172 aa16.69■□□□□ 0.26
UPF3A-209ENST00000492270 CXCL1P09341 107 aa16.69■□□□□ 0.26
UPF3A-209ENST00000492270 ALKAL2Q6UX46 152 aa16.69■□□□□ 0.26
UPF3A-209ENST00000492270 GTSF1LQ9H1H1 148 aa16.69■□□□□ 0.26
UPF3A-209ENST00000492270 MUC21A0A0G2JKD1 596 aa16.68■□□□□ 0.26
UPF3A-209ENST00000492270 MUC21A0A140T8X8 626 aa16.68■□□□□ 0.26
UPF3A-209ENST00000492270 LELP1Q5T871 98 aa16.68■□□□□ 0.26
UPF3A-209ENST00000492270 MSRB1Q9NZV6 116 aa16.68■□□□□ 0.26
UPF3A-209ENST00000492270 TRAV8-6A0A0B4J262 113 aa16.67■□□□□ 0.26
UPF3A-209ENST00000492270 SNAI2O43623 268 aa16.67■□□□□ 0.26
UPF3A-209ENST00000492270 PDE6DO43924 150 aa16.67■□□□□ 0.26
UPF3A-209ENST00000492270 NKX2-5P52952 324 aaPredicted RBP16.67■□□□□ 0.26
UPF3A-209ENST00000492270 KRTAP10-2P60368 255 aa16.67■□□□□ 0.26
UPF3A-209ENST00000492270 MED9Q9NWA0 146 aa16.67■□□□□ 0.26
UPF3A-209ENST00000492270 TRBV20OR9-2A0A075B6H5 130 aa16.66■□□□□ 0.26
UPF3A-209ENST00000492270 K7EP13 123 aa16.66■□□□□ 0.26
UPF3A-209ENST00000492270 LINC01556Q5JQF7 62 aa16.66■□□□□ 0.26
UPF3A-209ENST00000492270 VAX2Q9UIW0 290 aa16.66■□□□□ 0.26
UPF3A-209ENST00000492270 GNG4P50150 75 aa16.65■□□□□ 0.26
UPF3A-209ENST00000492270 SSBP4Q9BWG4 385 aaPredicted RBP16.65■□□□□ 0.26
UPF3A-209ENST00000492270 IGHV3-30P01768 117 aa16.64■□□□□ 0.25
UPF3A-209ENST00000492270 IGHV3-33P01772 117 aa16.64■□□□□ 0.25
UPF3A-209ENST00000492270 OR5AL1P0C617 328 aa16.64■□□□□ 0.25
UPF3A-209ENST00000492270 IGHV3-30-3P0DP02 117 aa16.64■□□□□ 0.25
UPF3A-209ENST00000492270 IGHV3-30-5P0DP03 117 aa16.64■□□□□ 0.25
UPF3A-209ENST00000492270 GZMBP10144 247 aa16.64■□□□□ 0.25
UPF3A-209ENST00000492270 SSTP61278 116 aa16.64■□□□□ 0.25
UPF3A-209ENST00000492270 NFE4Q86UQ8 179 aa16.64■□□□□ 0.25
UPF3A-209ENST00000492270 Q8N3U1 123 aa16.63■□□□□ 0.25
UPF3A-209ENST00000492270 C10orf126Q8N4M7 172 aa16.63■□□□□ 0.25
UPF3A-209ENST00000492270 C19orf71A6NCJ1 209 aa16.62■□□□□ 0.25
UPF3A-209ENST00000492270 BOLA1Q9Y3E2 137 aa16.62■□□□□ 0.25
UPF3A-209ENST00000492270 SPANXN1Q5VSR9 72 aa16.61■□□□□ 0.25
UPF3A-209ENST00000492270 DAZAP1Q96EP5 407 aaKnown RBP16.61■□□□□ 0.25
UPF3A-209ENST00000492270 LRP1BQ9NZR2 4599 aa16.61■□□□□ 0.25
UPF3A-209ENST00000492270 FUSP35637 526 aaKnown RBP eCLIP16.6■□□□□ 0.25
UPF3A-209ENST00000492270 ERVFC1-1P60608 527 aa16.6■□□□□ 0.25
UPF3A-209ENST00000492270 ZNF56Q15929 161 aa16.6■□□□□ 0.25
UPF3A-209ENST00000492270 OR2D3Q8NGH3 330 aa16.6■□□□□ 0.25
UPF3A-209ENST00000492270 SMIM12Q96EX1 92 aa16.6■□□□□ 0.25
UPF3A-209ENST00000492270 DNAH5Q8TE73 4624 aa16.59■□□□□ 0.25
UPF3A-209ENST00000492270 RBFOX3A6NFN3 312 aa16.59■□□□□ 0.25
UPF3A-209ENST00000492270 TAGLN2P37802 199 aaKnown RBP16.59■□□□□ 0.25
UPF3A-209ENST00000492270 BLOC1S1P78537 153 aa16.59■□□□□ 0.25
UPF3A-209ENST00000492270 RYR1P21817 5038 aa16.58■□□□□ 0.24
UPF3A-209ENST00000492270 IBA57-AS1B1ANH7 110 aa16.58■□□□□ 0.24
UPF3A-209ENST00000492270 IGLC6P0CF74 106 aa16.58■□□□□ 0.24
UPF3A-209ENST00000492270 TPPP3Q9BW30 176 aa16.58■□□□□ 0.24
UPF3A-209ENST00000492270 Q9HAA7 133 aa16.58■□□□□ 0.24
UPF3A-209ENST00000492270 A0A087WTM6 91 aa16.57■□□□□ 0.24
UPF3A-209ENST00000492270 TRBV10-1A0A0K0K1A3 114 aa16.57■□□□□ 0.24
UPF3A-209ENST00000492270 RAB4BP61018 213 aa16.57■□□□□ 0.24
UPF3A-209ENST00000492270 P01737 135 aa16.56■□□□□ 0.24
UPF3A-209ENST00000492270 RPS20P60866 119 aaKnown RBP16.56■□□□□ 0.24
UPF3A-209ENST00000492270 FER1L6-AS1Q8NA97 138 aa16.56■□□□□ 0.24
UPF3A-209ENST00000492270 LYPD6BQ8NI32 183 aa16.56■□□□□ 0.24
UPF3A-209ENST00000492270 UBE2D3P61077 147 aa16.55■□□□□ 0.24
UPF3A-209ENST00000492270 UBE2D2P62837 147 aa16.55■□□□□ 0.24
UPF3A-209ENST00000492270 RPL36AP83881 106 aaKnown RBP16.55■□□□□ 0.24
UPF3A-209ENST00000492270 RPL36ALQ969Q0 106 aaKnown RBP16.55■□□□□ 0.24
UPF3A-209ENST00000492270 KIF25-AS1Q9Y6Z4 181 aa16.55■□□□□ 0.24
UPF3A-209ENST00000492270 A0A087WWC5 75 aa16.54■□□□□ 0.24
UPF3A-209ENST00000492270 NEXN-AS1Q8NBZ9 246 aa16.54■□□□□ 0.24
UPF3A-209ENST00000492270 OR10G8Q8NGN5 311 aa16.54■□□□□ 0.24
UPF3A-209ENST00000492270 AP1S3Q96PC3 154 aa16.54■□□□□ 0.24
UPF3A-209ENST00000492270 TRBV7-3A0A075B6L6 115 aa16.53■□□□□ 0.24
UPF3A-209ENST00000492270 K7EN84 100 aa16.53■□□□□ 0.24
UPF3A-209ENST00000492270 EREGO14944 169 aa16.53■□□□□ 0.24
UPF3A-209ENST00000492270 DAZ4Q86SG3 579 aaKnown RBP16.53■□□□□ 0.24
UPF3A-209ENST00000492270 NUDT10Q8NFP7 164 aa16.53■□□□□ 0.24
UPF3A-209ENST00000492270 NUDT11Q96G61 164 aa16.53■□□□□ 0.24
UPF3A-209ENST00000492270 DAZ3Q9NR90 486 aaKnown RBP16.53■□□□□ 0.24
UPF3A-209ENST00000492270 HSPG2P98160 4391 aa16.52■□□□□ 0.24
UPF3A-209ENST00000492270 F5H697 171 aa16.52■□□□□ 0.24
UPF3A-209ENST00000492270 OCC1Q8TAD7 63 aa16.52■□□□□ 0.24
UPF3A-209ENST00000492270 BIN3Q9NQY0 253 aa16.52■□□□□ 0.24
UPF3A-209ENST00000492270 SMIM17P0DL12 118 aa16.51■□□□□ 0.23
UPF3A-209ENST00000492270 RNASE7Q9H1E1 156 aaKnown RBP16.51■□□□□ 0.23
UPF3A-209ENST00000492270 TMEM250H0YL14 139 aa16.5■□□□□ 0.23
UPF3A-209ENST00000492270 PSCAO43653 123 aa16.5■□□□□ 0.23
UPF3A-209ENST00000492270 CDK2AP2O75956 126 aa16.5■□□□□ 0.23
UPF3A-209ENST00000492270 LAGE3Q14657 143 aa16.5■□□□□ 0.23
UPF3A-209ENST00000492270 TOR2AQ5JU69 321 aa16.5■□□□□ 0.23
UPF3A-209ENST00000492270 LYZL1Q6UWQ5 148 aa16.5■□□□□ 0.23
UPF3A-209ENST00000492270 KRTAP17-1Q9BYP8 105 aa16.5■□□□□ 0.23
UPF3A-209ENST00000492270 XKRY2A2RUG3 117 aa16.49■□□□□ 0.23
UPF3A-209ENST00000492270 NIT1Q86X76 327 aa16.49■□□□□ 0.23
UPF3A-209ENST00000492270 APOBP04114 4563 aaKnown RBP16.48■□□□□ 0.23
UPF3A-209ENST00000492270 MGPP08493 103 aa16.48■□□□□ 0.23
UPF3A-209ENST00000492270 CEBPGP53567 150 aa16.48■□□□□ 0.23
UPF3A-209ENST00000492270 CACNG7P62955 275 aa16.48■□□□□ 0.23
UPF3A-209ENST00000492270 LRCOL1A6NCL2 159 aa16.47■□□□□ 0.23
UPF3A-209ENST00000492270 RPP21Q9H633 154 aaKnown RBP16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 229.3 ms