RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 LPAR5Q9H1C0 372 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 JPT1Q9UK76 154 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 MGAQ8IWI9 3026 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 HECTD4Q9Y4D8 3996 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 WNK1Q9H4A3 2382 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 SACSQ9NZJ4 4579 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 UNC13BO14795 1591 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 TNS1Q9HBL0 1735 aaKnown RBP0.43□□□□□ -2.34
CPSF3-205ENST00000489629 ADGRG4Q8IZF6 3080 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 CPS1P31327 1500 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 ZC3H13Q5T200 1668 aaKnown RBP0.43□□□□□ -2.34
CPSF3-205ENST00000489629 DYNC2H1Q8NCM8 4307 aaKnown RBP0.42□□□□□ -2.34
CPSF3-205ENST00000489629 PREX2Q70Z35 1606 aa0.42□□□□□ -2.34
CPSF3-205ENST00000489629 TJP1Q07157 1748 aa0.42□□□□□ -2.34
CPSF3-205ENST00000489629 MARF1Q9Y4F3 1742 aaKnown RBP0.42□□□□□ -2.34
CPSF3-205ENST00000489629 CENPEQ02224 2701 aa0.42□□□□□ -2.34
CPSF3-205ENST00000489629 CEP170BQ9Y4F5 1589 aaPredicted RBP0.42□□□□□ -2.34
CPSF3-205ENST00000489629 OVOS2A0A0G2JMS6 1433 aa0.42□□□□□ -2.34
CPSF3-205ENST00000489629 FGD6Q6ZV73 1430 aa0.42□□□□□ -2.34
CPSF3-205ENST00000489629 IGLV3-32A0A0A0MS00 114 aa0.42□□□□□ -2.34
CPSF3-205ENST00000489629 J3KT08 172 aa0.42□□□□□ -2.34
CPSF3-205ENST00000489629 CDC42EP2O14613 210 aa0.42□□□□□ -2.34
CPSF3-205ENST00000489629 DEGS1O15121 323 aa0.42□□□□□ -2.34
CPSF3-205ENST00000489629 TNFSF15O95150 251 aa0.42□□□□□ -2.34
CPSF3-205ENST00000489629 PDE6GP18545 87 aa0.42□□□□□ -2.34
CPSF3-205ENST00000489629 SPATA45Q537H7 98 aa0.42□□□□□ -2.34
CPSF3-205ENST00000489629 TMEM244Q5VVB8 128 aa0.42□□□□□ -2.34
CPSF3-205ENST00000489629 CASC2Q6XLA1 102 aa0.42□□□□□ -2.34
CPSF3-205ENST00000489629 OR5AK2Q8NH90 309 aa0.42□□□□□ -2.34
CPSF3-205ENST00000489629 SKA2Q8WVK7 121 aaPredicted RBP0.42□□□□□ -2.34
CPSF3-205ENST00000489629 COMMD3Q9UBI1 195 aa0.42□□□□□ -2.34
CPSF3-205ENST00000489629 HSPB11Q9Y547 144 aa0.42□□□□□ -2.34
CPSF3-205ENST00000489629 MAP1AP78559 2803 aaPredicted RBP0.42□□□□□ -2.34
CPSF3-205ENST00000489629 RREB1Q92766 1687 aa0.42□□□□□ -2.34
CPSF3-205ENST00000489629 CDK13Q14004 1512 aaKnown RBP0.42□□□□□ -2.34
CPSF3-205ENST00000489629 MYH6P13533 1939 aa0.42□□□□□ -2.34
CPSF3-205ENST00000489629 CHD9Q3L8U1 2897 aa0.42□□□□□ -2.34
CPSF3-205ENST00000489629 COL7A1Q02388 2944 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 DSPPQ9NZW4 1301 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 ABCA8O94911 1581 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 DIP2AQ14689 1571 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 AFDNP55196 1824 aaKnown RBP0.41□□□□□ -2.34
CPSF3-205ENST00000489629 PRKDCP78527 4128 aaKnown RBP0.41□□□□□ -2.34
CPSF3-205ENST00000489629 SHPRHQ149N8 1683 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 TNRC6CQ9HCJ0 1690 aaKnown RBP0.41□□□□□ -2.34
CPSF3-205ENST00000489629 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.41□□□□□ -2.34
CPSF3-205ENST00000489629 A0A1B0GX51 115 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 A6NN06 94 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 ZNF727A8MUV8 499 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 C9JAW5 83 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 ARPC5O15511 151 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 SAA1P0DJI8 122 aaPredicted RBP0.41□□□□□ -2.34
CPSF3-205ENST00000489629 QRFPP83859 136 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 OR5A2Q8NGI9 324 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 OTOSQ8NHW6 89 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 CIB3Q96Q77 187 aaPredicted RBP0.41□□□□□ -2.34
CPSF3-205ENST00000489629 HIGD1AQ9Y241 93 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 MPC1Q9Y5U8 109 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 ZMYM4Q5VZL5 1548 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 KIDINS220Q9ULH0 1771 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 WDR97A6NE52 1622 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 PLXNA2O75051 1894 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 MED23Q9ULK4 1368 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 LRRC37A2A6NM11 1700 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 ITSN1Q15811 1721 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 AKAP9Q99996 3911 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 PTPRQQ9UMZ3 2332 aa0.41□□□□□ -2.34
CPSF3-205ENST00000489629 EIF4G3O43432 1585 aaKnown RBP0.4□□□□□ -2.34
CPSF3-205ENST00000489629 MUC12Q9UKN1 5478 aa0.4□□□□□ -2.34
CPSF3-205ENST00000489629 ZNF469Q96JG9 3925 aaPredicted RBP0.4□□□□□ -2.34
CPSF3-205ENST00000489629 SCN11AQ9UI33 1791 aa0.4□□□□□ -2.35
CPSF3-205ENST00000489629 MED13LQ71F56 2210 aa0.4□□□□□ -2.35
CPSF3-205ENST00000489629 CACNA1EQ15878 2313 aa0.4□□□□□ -2.35
CPSF3-205ENST00000489629 LOC107986453A0A1B0GWG9 222 aa0.4□□□□□ -2.35
CPSF3-205ENST00000489629 NUPR2A6NF83 97 aa0.4□□□□□ -2.35
CPSF3-205ENST00000489629 UQCRQO14949 82 aa0.4□□□□□ -2.35
CPSF3-205ENST00000489629 IGHV3-30P01768 117 aa0.4□□□□□ -2.35
CPSF3-205ENST00000489629 IGKCP01834 107 aa0.4□□□□□ -2.35
CPSF3-205ENST00000489629 CD3DP04234 171 aa0.4□□□□□ -2.35
CPSF3-205ENST00000489629 PAEPP09466 180 aa0.4□□□□□ -2.35
CPSF3-205ENST00000489629 IGHV3-30-5P0DP03 117 aa0.4□□□□□ -2.35
CPSF3-205ENST00000489629 RPL37AP61513 92 aaKnown RBP0.4□□□□□ -2.35
CPSF3-205ENST00000489629 SNRPD3P62318 126 aaKnown RBP0.4□□□□□ -2.35
CPSF3-205ENST00000489629 IZUMO2Q6UXV1 221 aa0.4□□□□□ -2.35
CPSF3-205ENST00000489629 OR8I2Q8N0Y5 310 aa0.4□□□□□ -2.35
CPSF3-205ENST00000489629 C19orf12Q9NSK7 152 aa0.4□□□□□ -2.35
CPSF3-205ENST00000489629 DNAJC15Q9Y5T4 150 aa0.4□□□□□ -2.35
CPSF3-205ENST00000489629 ACANP16112 2415 aa0.4□□□□□ -2.35
CPSF3-205ENST00000489629 PKD1L3Q7Z443 1732 aa0.4□□□□□ -2.35
CPSF3-205ENST00000489629 DNAH1Q9P2D7 4330 aa0.4□□□□□ -2.35
CPSF3-205ENST00000489629 ANK2Q01484 3957 aa0.4□□□□□ -2.35
CPSF3-205ENST00000489629 WDR7Q9Y4E6 1490 aa0.4□□□□□ -2.35
CPSF3-205ENST00000489629 CSMD3Q7Z407 3707 aa0.4□□□□□ -2.35
CPSF3-205ENST00000489629 TACC2O95359 2948 aa0.4□□□□□ -2.35
CPSF3-205ENST00000489629 TTC37Q6PGP7 1564 aa0.4□□□□□ -2.35
CPSF3-205ENST00000489629 APC2O95996 2303 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.39□□□□□ -2.35
CPSF3-205ENST00000489629 DYNC1H1Q14204 4646 aaKnown RBP0.39□□□□□ -2.35
CPSF3-205ENST00000489629 MAP3K1Q13233 1512 aa0.39□□□□□ -2.35
CPSF3-205ENST00000489629 LRP1BQ9NZR2 4599 aa0.39□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms