RNA–Protein interactions for RNA: ENST00000461047.2

NUP98-208, Transcript of nucleoporin 98, human

TSL 3

Gene NUP98, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP98-208	ENST00000461047	SPINK4	O60575	86 aa		4.24	□□□□□ -1.73
NUP98-208	ENST00000461047	GAGE7	O76087	117 aa		4.24	□□□□□ -1.73
NUP98-208	ENST00000461047	APOC3	P02656	99 aa		4.24	□□□□□ -1.73
NUP98-208	ENST00000461047	TRGC1	P0CF51	173 aa		4.24	□□□□□ -1.73
NUP98-208	ENST00000461047	GAGE12F	P0CL80	117 aa		4.24	□□□□□ -1.73
NUP98-208	ENST00000461047	GAGE12G	P0CL81	117 aa		4.24	□□□□□ -1.73
NUP98-208	ENST00000461047	GAGE12I	P0CL82	117 aa		4.24	□□□□□ -1.73
NUP98-208	ENST00000461047	RIG	Q13278	110 aa		4.24	□□□□□ -1.73
NUP98-208	ENST00000461047	RHEB	Q15382	184 aa		4.24	□□□□□ -1.73
NUP98-208	ENST00000461047	TWIST1	Q15672	202 aa		4.24	□□□□□ -1.73
NUP98-208	ENST00000461047	KCNIP4	Q6PIL6	250 aa		4.24	□□□□□ -1.73
NUP98-208	ENST00000461047	C11orf72	Q8NBR9	251 aa		4.24	□□□□□ -1.73
NUP98-208	ENST00000461047	OR4C5	Q8NGB2	326 aa		4.24	□□□□□ -1.73
NUP98-208	ENST00000461047	RASL10A	Q92737	203 aa		4.24	□□□□□ -1.73
NUP98-208	ENST00000461047	C9orf85	Q96MD7	179 aa		4.24	□□□□□ -1.73
NUP98-208	ENST00000461047	C18orf15	Q96N68	181 aa		4.24	□□□□□ -1.73
NUP98-208	ENST00000461047	NAT8B	Q9UHF3	227 aa		4.24	□□□□□ -1.73
NUP98-208	ENST00000461047	CARHSP1	Q9Y2V2	147 aa	Known RBP	4.24	□□□□□ -1.73
NUP98-208	ENST00000461047	PKD1L1	Q8TDX9	2849 aa		4.24	□□□□□ -1.73
NUP98-208	ENST00000461047	TRGV4	A0A0C4DH28	118 aa		4.23	□□□□□ -1.73
NUP98-208	ENST00000461047		A0A1B0GUT8	65 aa		4.23	□□□□□ -1.73
NUP98-208	ENST00000461047	NUPR2	A6NF83	97 aa		4.23	□□□□□ -1.73
NUP98-208	ENST00000461047		M0R381	172 aa		4.23	□□□□□ -1.73
NUP98-208	ENST00000461047	RHOD	O00212	210 aa		4.23	□□□□□ -1.73
NUP98-208	ENST00000461047	PRM2	P04554	102 aa		4.23	□□□□□ -1.73
NUP98-208	ENST00000461047	RNASE3	P12724	160 aa	Known RBP	4.23	□□□□□ -1.73
NUP98-208	ENST00000461047	FOXA3	P55318	350 aa	Predicted RBP	4.23	□□□□□ -1.73
NUP98-208	ENST00000461047	C10orf91	Q5T1B1	145 aa		4.23	□□□□□ -1.73
NUP98-208	ENST00000461047	LYZL1	Q6UWQ5	148 aa		4.23	□□□□□ -1.73
NUP98-208	ENST00000461047		Q6ZQT7	251 aa		4.23	□□□□□ -1.73
NUP98-208	ENST00000461047	SLC7A5P1	Q8MH63	180 aa		4.23	□□□□□ -1.73
NUP98-208	ENST00000461047	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	4.23	□□□□□ -1.73
NUP98-208	ENST00000461047	FAM210B	Q96KR6	192 aa		4.23	□□□□□ -1.73
NUP98-208	ENST00000461047	AP1S3	Q96PC3	154 aa		4.23	□□□□□ -1.73
NUP98-208	ENST00000461047	IMMP2L	Q96T52	175 aa		4.23	□□□□□ -1.73
NUP98-208	ENST00000461047	RPS10P5	Q9NQ39	176 aa		4.23	□□□□□ -1.73
NUP98-208	ENST00000461047	TMEM242	Q9NWH2	141 aa		4.23	□□□□□ -1.73
NUP98-208	ENST00000461047	MRPL16	Q9NX20	251 aa	Known RBP	4.23	□□□□□ -1.73
NUP98-208	ENST00000461047		V9GYV3	84 aa		4.23	□□□□□ -1.73
NUP98-208	ENST00000461047		A0A087WWC5	75 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047	DEFB131B	A0A096LNP1	70 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047	TRAV4	A0A0B4J268	109 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047	SMIM27	A0A1W2PRY6	76 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047	PLAC8L1	A1L4L8	177 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047	HIGD1C	A8MV81	97 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047		F5H768	121 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047		H7C1H1	209 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047	SNAI2	O43623	268 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047	IGLC6	P0CF74	106 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047	GZMB	P10144	247 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047	HTN3	P15516	51 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047	NTF3	P20783	257 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047	TCTA	P57738	103 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047	NANOS2	P60321	138 aa	Known RBP	4.22	□□□□□ -1.73
NUP98-208	ENST00000461047	SST	P61278	116 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047	C12orf74	Q32Q52	190 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047	RNF212	Q495C1	297 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047	ZFP2	Q6ZN57	461 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047		Q6ZTI0	123 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047	PGLYRP4	Q96LB8	373 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047	C1orf43	Q9BWL3	253 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047	EDA2R	Q9HAV5	297 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047	SCRT2	Q9NQ03	307 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047	NBEAL1	Q6ZS30	2694 aa		4.22	□□□□□ -1.73
NUP98-208	ENST00000461047	ANK2	Q01484	3957 aa		4.21	□□□□□ -1.74
NUP98-208	ENST00000461047	IGHV4-4	A0A075B6R2	117 aa		4.21	□□□□□ -1.74
NUP98-208	ENST00000461047	TRAV9-1	A0A075B6T8	112 aa		4.21	□□□□□ -1.74
NUP98-208	ENST00000461047	C7orf77	A4D0Y5	90 aa		4.21	□□□□□ -1.74
NUP98-208	ENST00000461047	C3orf84	H3BNL1	204 aa		4.21	□□□□□ -1.74
NUP98-208	ENST00000461047	RS1	O15537	224 aa		4.21	□□□□□ -1.74
NUP98-208	ENST00000461047	S100A1	P23297	94 aa		4.21	□□□□□ -1.74
NUP98-208	ENST00000461047	CTRL	P40313	264 aa		4.21	□□□□□ -1.74
NUP98-208	ENST00000461047	COX19	Q49B96	90 aa		4.21	□□□□□ -1.74
NUP98-208	ENST00000461047	FAM74A4	Q5TZK3	123 aa		4.21	□□□□□ -1.74
NUP98-208	ENST00000461047	CEMP1	Q6PRD7	247 aa	Predicted RBP	4.21	□□□□□ -1.74
NUP98-208	ENST00000461047	SH2D6	Q7Z4S9	175 aa		4.21	□□□□□ -1.74
NUP98-208	ENST00000461047	ATP5L2	Q7Z4Y8	100 aa		4.21	□□□□□ -1.74
NUP98-208	ENST00000461047	LINC00612	Q8N6U2	182 aa		4.21	□□□□□ -1.74
NUP98-208	ENST00000461047	OR10AG1	Q8NH19	301 aa		4.21	□□□□□ -1.74
NUP98-208	ENST00000461047	MUC7	Q8TAX7	377 aa		4.21	□□□□□ -1.74
NUP98-208	ENST00000461047	PHLDA1	Q8WV24	401 aa	Predicted RBP	4.21	□□□□□ -1.74
NUP98-208	ENST00000461047	FRZB	Q92765	325 aa		4.21	□□□□□ -1.74
NUP98-208	ENST00000461047	PRADC1	Q9BSG0	188 aa		4.21	□□□□□ -1.74
NUP98-208	ENST00000461047	PRO0255	Q9UI72	69 aa		4.21	□□□□□ -1.74
NUP98-208	ENST00000461047	HHLA3	Q9XRX5	114 aa		4.21	□□□□□ -1.74
NUP98-208	ENST00000461047	AGRN	O00468	2067 aa		4.21	□□□□□ -1.74
NUP98-208	ENST00000461047	TRBV6-4	A0A1B0GX49	114 aa		4.2	□□□□□ -1.74
NUP98-208	ENST00000461047		H3BNG1	76 aa		4.2	□□□□□ -1.74
NUP98-208	ENST00000461047	NXPH4	O95158	308 aa		4.2	□□□□□ -1.74
NUP98-208	ENST00000461047	PPP1R17	O96001	155 aa		4.2	□□□□□ -1.74
NUP98-208	ENST00000461047	IGHV3-53	P01767	116 aa		4.2	□□□□□ -1.74
NUP98-208	ENST00000461047	ADCYAP1	P18509	176 aa		4.2	□□□□□ -1.74
NUP98-208	ENST00000461047	RAB4B	P61018	213 aa		4.2	□□□□□ -1.74
NUP98-208	ENST00000461047	CFAP126	Q5VTH2	177 aa		4.2	□□□□□ -1.74
NUP98-208	ENST00000461047	RASL11A	Q6T310	242 aa		4.2	□□□□□ -1.74
NUP98-208	ENST00000461047		Q6ZTC4	211 aa		4.2	□□□□□ -1.74
NUP98-208	ENST00000461047	C14orf178	Q8N769	122 aa	Predicted RBP	4.2	□□□□□ -1.74
NUP98-208	ENST00000461047	C15orf53	Q8NAA6	179 aa		4.2	□□□□□ -1.74
NUP98-208	ENST00000461047	NUP35	Q8NFH5	326 aa		4.2	□□□□□ -1.74
NUP98-208	ENST00000461047	GTSF1	Q8WW33	167 aa		4.2	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 119.9 ms