RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 CRYGDP07320 174 aa16.42■□□□□ 0.22
CPSF4-204ENST00000436336 RAB4AP20338 218 aa16.42■□□□□ 0.22
CPSF4-204ENST00000436336 LINC00612Q8N6U2 182 aa16.42■□□□□ 0.22
CPSF4-204ENST00000436336 ZMAT4Q9H898 229 aa16.42■□□□□ 0.22
CPSF4-204ENST00000436336 A0A087WWL8 130 aa16.42■□□□□ 0.22
CPSF4-204ENST00000436336 GAGE12BA1L429 117 aa16.42■□□□□ 0.22
CPSF4-204ENST00000436336 GAGE7O76087 117 aa16.42■□□□□ 0.22
CPSF4-204ENST00000436336 GAGE12FP0CL80 117 aa16.42■□□□□ 0.22
CPSF4-204ENST00000436336 GAGE12GP0CL81 117 aa16.42■□□□□ 0.22
CPSF4-204ENST00000436336 GAGE12IP0CL82 117 aa16.42■□□□□ 0.22
CPSF4-204ENST00000436336 FAM222AQ5U5X8 452 aa16.42■□□□□ 0.22
CPSF4-204ENST00000436336 CFAP126Q5VTH2 177 aa16.42■□□□□ 0.22
CPSF4-204ENST00000436336 RNF185Q96GF1 192 aa16.42■□□□□ 0.22
CPSF4-204ENST00000436336 SAMD10Q9BYL1 202 aa16.42■□□□□ 0.22
CPSF4-204ENST00000436336 C11orf68Q9H3H3 251 aaKnown RBP16.42■□□□□ 0.22
CPSF4-204ENST00000436336 DKK2Q9UBU2 259 aa16.42■□□□□ 0.22
CPSF4-204ENST00000436336 FAM74A4Q5TZK3 123 aa16.41■□□□□ 0.22
CPSF4-204ENST00000436336 LINC00315P59091 139 aa16.4■□□□□ 0.22
CPSF4-204ENST00000436336 TRAV4A0A0B4J268 109 aa16.39■□□□□ 0.21
CPSF4-204ENST00000436336 PHOX2AO14813 284 aa16.39■□□□□ 0.21
CPSF4-204ENST00000436336 MRPL51Q4U2R6 128 aaKnown RBP16.39■□□□□ 0.21
CPSF4-204ENST00000436336 POM121L12Q8N7R1 296 aa16.39■□□□□ 0.21
CPSF4-204ENST00000436336 C18orf15Q96N68 181 aa16.39■□□□□ 0.21
CPSF4-204ENST00000436336 TRGV2A0A075B6R0 118 aa16.39■□□□□ 0.21
CPSF4-204ENST00000436336 RHODO00212 210 aa16.39■□□□□ 0.21
CPSF4-204ENST00000436336 MGPP08493 103 aa16.39■□□□□ 0.21
CPSF4-204ENST00000436336 SPART-AS1P0CW21 52 aa16.39■□□□□ 0.21
CPSF4-204ENST00000436336 KIAA1644Q3SXP7 199 aa16.39■□□□□ 0.21
CPSF4-204ENST00000436336 OR4C5Q8NGB2 326 aa16.39■□□□□ 0.21
CPSF4-204ENST00000436336 TEX48A0A1B0GUV7 120 aa16.38■□□□□ 0.21
CPSF4-204ENST00000436336 UFSP1Q6NVU6 142 aa16.38■□□□□ 0.21
CPSF4-204ENST00000436336 ZFP2Q6ZN57 461 aa16.38■□□□□ 0.21
CPSF4-204ENST00000436336 DEFB130BP0DP73 79 aa16.37■□□□□ 0.21
CPSF4-204ENST00000436336 DEFB130AP0DP74 79 aa16.37■□□□□ 0.21
CPSF4-204ENST00000436336 C1orf196B1AJZ1 125 aa16.36■□□□□ 0.21
CPSF4-204ENST00000436336 CIDEAO60543 219 aa16.36■□□□□ 0.21
CPSF4-204ENST00000436336 CELA1Q9UNI1 258 aa16.36■□□□□ 0.21
CPSF4-204ENST00000436336 ZNF56Q15929 161 aa16.36■□□□□ 0.21
CPSF4-204ENST00000436336 MRAP2Q96G30 205 aa16.36■□□□□ 0.21
CPSF4-204ENST00000436336 HUWE1Q7Z6Z7 4374 aaKnown RBP16.35■□□□□ 0.21
CPSF4-204ENST00000436336 F5H697 171 aa16.35■□□□□ 0.21
CPSF4-204ENST00000436336 PPBPP02775 128 aa16.35■□□□□ 0.21
CPSF4-204ENST00000436336 CKS2P33552 79 aa16.35■□□□□ 0.21
CPSF4-204ENST00000436336 ZNF479Q96JC4 524 aa16.35■□□□□ 0.21
CPSF4-204ENST00000436336 DNAH9Q9NYC9 4486 aa16.35■□□□□ 0.21
CPSF4-204ENST00000436336 IGHV3-73A0A0B4J1V6 119 aa16.34■□□□□ 0.21
CPSF4-204ENST00000436336 D6R8Y8 96 aa16.34■□□□□ 0.21
CPSF4-204ENST00000436336 ORMDL3Q8N138 153 aa16.34■□□□□ 0.21
CPSF4-204ENST00000436336 U3KQK5 164 aa16.34■□□□□ 0.21
CPSF4-204ENST00000436336 A0A0J9YWU9 116 aa16.33■□□□□ 0.21
CPSF4-204ENST00000436336 DAD1P61803 113 aa16.33■□□□□ 0.21
CPSF4-204ENST00000436336 TRAV26-2A0A0B4J265 109 aa16.33■□□□□ 0.2
CPSF4-204ENST00000436336 IGHV3-53P01767 116 aa16.33■□□□□ 0.2
CPSF4-204ENST00000436336 SRIP30626 198 aa16.33■□□□□ 0.2
CPSF4-204ENST00000436336 SUMO4Q6EEV6 95 aa16.33■□□□□ 0.2
CPSF4-204ENST00000436336 ALKBH7Q9BT30 221 aaPredicted RBP16.33■□□□□ 0.2
CPSF4-204ENST00000436336 NHLRC4P0CG21 123 aaPredicted RBP16.32■□□□□ 0.2
CPSF4-204ENST00000436336 TENM3Q9P273 2699 aa16.31■□□□□ 0.2
CPSF4-204ENST00000436336 SMKR1H3BMG3 65 aa16.31■□□□□ 0.2
CPSF4-204ENST00000436336 NCR2O95944 276 aa16.31■□□□□ 0.2
CPSF4-204ENST00000436336 RAB5BP61020 215 aa16.31■□□□□ 0.2
CPSF4-204ENST00000436336 PRELID3AQ96N28 172 aa16.31■□□□□ 0.2
CPSF4-204ENST00000436336 EDA2RQ9HAV5 297 aa16.31■□□□□ 0.2
CPSF4-204ENST00000436336 HIST1H2BKO60814 126 aa16.29■□□□□ 0.2
CPSF4-204ENST00000436336 GAS8-AS1O95177 125 aa16.29■□□□□ 0.2
CPSF4-204ENST00000436336 HIST1H2BJP06899 126 aa16.29■□□□□ 0.2
CPSF4-204ENST00000436336 HIST1H2BOP23527 126 aa16.29■□□□□ 0.2
CPSF4-204ENST00000436336 HIST1H2BBP33778 126 aa16.29■□□□□ 0.2
CPSF4-204ENST00000436336 HIST1H2BDP58876 126 aa16.29■□□□□ 0.2
CPSF4-204ENST00000436336 HIST1H2BCP62807 126 aa16.29■□□□□ 0.2
CPSF4-204ENST00000436336 HIST2H2BEQ16778 126 aa16.29■□□□□ 0.2
CPSF4-204ENST00000436336 HIST2H2BFQ5QNW6 126 aaPredicted RBP16.29■□□□□ 0.2
CPSF4-204ENST00000436336 HIST1H2BHQ93079 126 aa16.29■□□□□ 0.2
CPSF4-204ENST00000436336 HIST1H2BNQ99877 126 aa16.29■□□□□ 0.2
CPSF4-204ENST00000436336 HIST1H2BMQ99879 126 aa16.29■□□□□ 0.2
CPSF4-204ENST00000436336 LAMTOR2Q9Y2Q5 125 aa16.29■□□□□ 0.2
CPSF4-204ENST00000436336 H7C1H1 209 aa16.28■□□□□ 0.2
CPSF4-204ENST00000436336 M0QY20 66 aa16.28■□□□□ 0.2
CPSF4-204ENST00000436336 TRGV4A0A0C4DH28 118 aa16.28■□□□□ 0.2
CPSF4-204ENST00000436336 PPP1R17O96001 155 aa16.28■□□□□ 0.2
CPSF4-204ENST00000436336 GATA1P15976 413 aaPredicted RBP16.28■□□□□ 0.2
CPSF4-204ENST00000436336 FHL2Q14192 279 aa16.28■□□□□ 0.2
CPSF4-204ENST00000436336 Q6ZSN1 163 aa16.28■□□□□ 0.2
CPSF4-204ENST00000436336 ATP5G1P05496 136 aa16.27■□□□□ 0.19
CPSF4-204ENST00000436336 C12orf74Q32Q52 190 aa16.27■□□□□ 0.19
CPSF4-204ENST00000436336 NRACQ8N912 160 aa16.27■□□□□ 0.19
CPSF4-204ENST00000436336 MEGF8Q7Z7M0 2845 aa16.27■□□□□ 0.19
CPSF4-204ENST00000436336 TNFRSF6BO95407 300 aa16.26■□□□□ 0.19
CPSF4-204ENST00000436336 NPYP01303 97 aa16.26■□□□□ 0.19
CPSF4-204ENST00000436336 C11orf45Q8TAV5 145 aa16.25■□□□□ 0.19
CPSF4-204ENST00000436336 C18orf32Q8TCD1 76 aa16.25■□□□□ 0.19
CPSF4-204ENST00000436336 RPL39LQ96EH5 51 aaKnown RBP16.25■□□□□ 0.19
CPSF4-204ENST00000436336 OR10J3Q5JRS4 329 aa16.25■□□□□ 0.19
CPSF4-204ENST00000436336 TRBV6-4A0A1B0GX49 114 aa16.24■□□□□ 0.19
CPSF4-204ENST00000436336 NIT2Q9NQR4 276 aa16.24■□□□□ 0.19
CPSF4-204ENST00000436336 K7EQD1 137 aa16.23■□□□□ 0.19
CPSF4-204ENST00000436336 HOXA5P20719 270 aa16.23■□□□□ 0.19
CPSF4-204ENST00000436336 SLC25A29Q8N8R3 303 aa16.23■□□□□ 0.19
CPSF4-204ENST00000436336 Q0VG73 95 aa16.22■□□□□ 0.19
CPSF4-204ENST00000436336 PRKDCP78527 4128 aaKnown RBP16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 1299.9 ms