RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 SMIM17P0DL12 118 aa11.05□□□□□ -0.64
USP4-203ENST00000415188 FXYD7P58549 80 aa11.05□□□□□ -0.64
USP4-203ENST00000415188 SNRPD3P62318 126 aaKnown RBP11.05□□□□□ -0.64
USP4-203ENST00000415188 F6UB75 175 aa11.04□□□□□ -0.64
USP4-203ENST00000415188 J3KRW8 73 aa11.04□□□□□ -0.64
USP4-203ENST00000415188 PRSS1P07477 247 aa11.04□□□□□ -0.64
USP4-203ENST00000415188 HLA-DRB4P13762 266 aa11.04□□□□□ -0.64
USP4-203ENST00000415188 RPL32P62910 135 aaKnown RBP11.04□□□□□ -0.64
USP4-203ENST00000415188 SEC11AP67812 179 aa11.04□□□□□ -0.64
USP4-203ENST00000415188 UBE2E2Q96LR5 201 aa11.04□□□□□ -0.64
USP4-203ENST00000415188 HLA-DRB4X5D2U9 266 aa11.04□□□□□ -0.64
USP4-203ENST00000415188 K7EQG2 157 aa11.03□□□□□ -0.64
USP4-203ENST00000415188 RNASE3P12724 160 aaKnown RBP11.03□□□□□ -0.64
USP4-203ENST00000415188 ZNF124Q15973 351 aa11.03□□□□□ -0.64
USP4-203ENST00000415188 FAM159AQ6UWV7 190 aa11.03□□□□□ -0.64
USP4-203ENST00000415188 C18orf15Q96N68 181 aa11.03□□□□□ -0.64
USP4-203ENST00000415188 IGKV3-7A0A075B6H7 116 aa11.02□□□□□ -0.65
USP4-203ENST00000415188 TRAV26-2A0A0B4J265 109 aa11.02□□□□□ -0.65
USP4-203ENST00000415188 C7orf71A4D174 169 aa11.02□□□□□ -0.65
USP4-203ENST00000415188 DPM2O94777 84 aa11.02□□□□□ -0.65
USP4-203ENST00000415188 DUSP14O95147 198 aaKnown RBP11.02□□□□□ -0.65
USP4-203ENST00000415188 IGKCP01834 107 aa11.02□□□□□ -0.65
USP4-203ENST00000415188 NPSP0C0P6 89 aa11.02□□□□□ -0.65
USP4-203ENST00000415188 SUMO2P61956 95 aaKnown RBP11.02□□□□□ -0.65
USP4-203ENST00000415188 Q8N2B8 174 aa11.02□□□□□ -0.65
USP4-203ENST00000415188 DKK2Q9UBU2 259 aa11.02□□□□□ -0.65
USP4-203ENST00000415188 TRAV12-1A0A0B4J245 112 aa11.01□□□□□ -0.65
USP4-203ENST00000415188 A0A0J9YX75 114 aa11.01□□□□□ -0.65
USP4-203ENST00000415188 LINC01549A6NIU2 74 aa11.01□□□□□ -0.65
USP4-203ENST00000415188 CD28P10747 220 aa11.01□□□□□ -0.65
USP4-203ENST00000415188 DEFB1P60022 68 aa11.01□□□□□ -0.65
USP4-203ENST00000415188 HSD52Q0P140 79 aa11.01□□□□□ -0.65
USP4-203ENST00000415188 TMEM97Q5BJF2 176 aa11.01□□□□□ -0.65
USP4-203ENST00000415188 RASL10AQ92737 203 aa11.01□□□□□ -0.65
USP4-203ENST00000415188 TP73-AS1Q9UF72 201 aa11.01□□□□□ -0.65
USP4-203ENST00000415188 G3V4G9 280 aa11□□□□□ -0.65
USP4-203ENST00000415188 NSUN5P1Q3KNT7 163 aa11□□□□□ -0.65
USP4-203ENST00000415188 WFDC3Q8IUB2 231 aa11□□□□□ -0.65
USP4-203ENST00000415188 IGHV4OR15-8A0A075B7B6 117 aa11□□□□□ -0.65
USP4-203ENST00000415188 A0A087WW49 117 aa11□□□□□ -0.65
USP4-203ENST00000415188 A0A087WX48 190 aa11□□□□□ -0.65
USP4-203ENST00000415188 TAX1BP3O14907 124 aa11□□□□□ -0.65
USP4-203ENST00000415188 GNRH2O43555 120 aa11□□□□□ -0.65
USP4-203ENST00000415188 UBE2V1Q13404 147 aa11□□□□□ -0.65
USP4-203ENST00000415188 C14orf178Q8N769 122 aaPredicted RBP11□□□□□ -0.65
USP4-203ENST00000415188 TOMM6Q96B49 74 aa11□□□□□ -0.65
USP4-203ENST00000415188 HIGD1BQ9P298 99 aa11□□□□□ -0.65
USP4-203ENST00000415188 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.99□□□□□ -0.65
USP4-203ENST00000415188 MGPP08493 103 aa10.99□□□□□ -0.65
USP4-203ENST00000415188 EDN2P20800 178 aa10.99□□□□□ -0.65
USP4-203ENST00000415188 PLNP26678 52 aa10.99□□□□□ -0.65
USP4-203ENST00000415188 C10orf99Q6UWK7 81 aa10.99□□□□□ -0.65
USP4-203ENST00000415188 KIF25-AS1Q9Y6Z4 181 aa10.99□□□□□ -0.65
USP4-203ENST00000415188 TRAV2A0A0B4J234 112 aa10.98□□□□□ -0.65
USP4-203ENST00000415188 A6NDN8 102 aa10.98□□□□□ -0.65
USP4-203ENST00000415188 ZNF688P0C7X2 276 aa10.98□□□□□ -0.65
USP4-203ENST00000415188 HOXD3P31249 432 aaPredicted RBP10.98□□□□□ -0.65
USP4-203ENST00000415188 SYNJ2BPP57105 145 aa10.98□□□□□ -0.65
USP4-203ENST00000415188 BEAN1Q3B7T3 259 aa10.98□□□□□ -0.65
USP4-203ENST00000415188 FOXI2Q6ZQN5 318 aa10.98□□□□□ -0.65
USP4-203ENST00000415188 C9orf85Q96MD7 179 aa10.98□□□□□ -0.65
USP4-203ENST00000415188 CITED2Q99967 270 aaPredicted RBP10.98□□□□□ -0.65
USP4-203ENST00000415188 HHLA3Q9XRX5 114 aa10.98□□□□□ -0.65
USP4-203ENST00000415188 ADARB2-AS1A8MUL3 147 aa10.97□□□□□ -0.65
USP4-203ENST00000415188 PRB2P02812 416 aaPredicted RBP10.97□□□□□ -0.65
USP4-203ENST00000415188 NMUP48645 174 aa10.97□□□□□ -0.65
USP4-203ENST00000415188 PTTG1IPP53801 180 aa10.97□□□□□ -0.65
USP4-203ENST00000415188 SAMD5Q5TGI4 173 aa10.97□□□□□ -0.65
USP4-203ENST00000415188 SYT8Q8NBV8 401 aa10.97□□□□□ -0.65
USP4-203ENST00000415188 H7C1H1 209 aa10.96□□□□□ -0.65
USP4-203ENST00000415188 CDKN1BP46527 198 aa10.96□□□□□ -0.65
USP4-203ENST00000415188 ADAMTSL5Q6ZMM2 481 aa10.96□□□□□ -0.65
USP4-203ENST00000415188 NOTCH3Q9UM47 2321 aa10.95□□□□□ -0.66
USP4-203ENST00000415188 TRAV12-3A0A0B4J271 114 aa10.95□□□□□ -0.66
USP4-203ENST00000415188 IGHV3-16A0A0C4DH30 117 aa10.95□□□□□ -0.66
USP4-203ENST00000415188 CD7P09564 240 aa10.95□□□□□ -0.66
USP4-203ENST00000415188 LINC00315P59091 139 aa10.95□□□□□ -0.66
USP4-203ENST00000415188 NDUFA11Q86Y39 141 aa10.95□□□□□ -0.66
USP4-203ENST00000415188 RPL39LQ96EH5 51 aaKnown RBP10.95□□□□□ -0.66
USP4-203ENST00000415188 SCGB3A1Q96QR1 104 aa10.95□□□□□ -0.66
USP4-203ENST00000415188 MRPL35Q9NZE8 188 aaKnown RBP10.95□□□□□ -0.66
USP4-203ENST00000415188 DNAH3Q8TD57 4116 aa10.95□□□□□ -0.66
USP4-203ENST00000415188 MUC4Q99102 2169 aa10.95□□□□□ -0.66
USP4-203ENST00000415188 IGHV1OR15-1A0A075B7D0 117 aa10.94□□□□□ -0.66
USP4-203ENST00000415188 A0A1W2PRX2 142 aa10.94□□□□□ -0.66
USP4-203ENST00000415188 F8VRH5 84 aa10.94□□□□□ -0.66
USP4-203ENST00000415188 OXLD1Q5BKU9 147 aa10.94□□□□□ -0.66
USP4-203ENST00000415188 KPRPQ5T749 579 aaPredicted RBP10.94□□□□□ -0.66
USP4-203ENST00000415188 TRGV11A0A075B6L2 103 aa10.93□□□□□ -0.66
USP4-203ENST00000415188 TRBV6-5A0A0K0K1A5 114 aa10.93□□□□□ -0.66
USP4-203ENST00000415188 A8MTW9 85 aa10.93□□□□□ -0.66
USP4-203ENST00000415188 H3BRM9 83 aa10.93□□□□□ -0.66
USP4-203ENST00000415188 CCL25O15444 150 aa10.93□□□□□ -0.66
USP4-203ENST00000415188 VAMP3Q15836 100 aa10.93□□□□□ -0.66
USP4-203ENST00000415188 ZC2HC1BQ5TFG8 222 aa10.93□□□□□ -0.66
USP4-203ENST00000415188 PCP2Q8IVA1 136 aa10.93□□□□□ -0.66
USP4-203ENST00000415188 CSTL1Q9H114 145 aa10.93□□□□□ -0.66
USP4-203ENST00000415188 PEMTQ9UBM1 199 aa10.93□□□□□ -0.66
USP4-203ENST00000415188 TCTEX1D4Q5JR98 221 aa10.93□□□□□ -0.66
USP4-203ENST00000415188 C2orf66Q6UXQ4 117 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms