RNA–Protein interactions for RNA: ENST00000396345.1

HOXA9-202, Transcript of homeobox A9, humanhuman

TSL 2 BASIC

Gene HOXA9, Length 797 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-202ENST00000396345 FAM74A4Q5TZK3 123 aa13.36□□□□□ -0.27
HOXA9-202ENST00000396345 COMMD7Q86VX2 200 aa13.36□□□□□ -0.27
HOXA9-202ENST00000396345 ICOSQ9Y6W8 199 aa13.36□□□□□ -0.27
HOXA9-202ENST00000396345 A0A096LPF7 62 aa13.35□□□□□ -0.27
HOXA9-202ENST00000396345 TRBV6-4A0A1B0GX49 114 aa13.35□□□□□ -0.27
HOXA9-202ENST00000396345 CRYGDP07320 174 aa13.35□□□□□ -0.27
HOXA9-202ENST00000396345 GYPEP15421 78 aa13.35□□□□□ -0.27
HOXA9-202ENST00000396345 CTRLP40313 264 aa13.35□□□□□ -0.27
HOXA9-202ENST00000396345 SLC25A29Q8N8R3 303 aa13.35□□□□□ -0.27
HOXA9-202ENST00000396345 OR10G8Q8NGN5 311 aa13.35□□□□□ -0.27
HOXA9-202ENST00000396345 GTSF1Q8WW33 167 aa13.35□□□□□ -0.27
HOXA9-202ENST00000396345 LINC00862A6NCI5 91 aa13.34□□□□□ -0.27
HOXA9-202ENST00000396345 MRPL23Q16540 153 aaKnown RBP13.34□□□□□ -0.27
HOXA9-202ENST00000396345 WDR73Q6P4I2 378 aa13.34□□□□□ -0.27
HOXA9-202ENST00000396345 Q6ZSN1 163 aa13.34□□□□□ -0.27
HOXA9-202ENST00000396345 UBE2DNLQ8IWF7 75 aa13.34□□□□□ -0.27
HOXA9-202ENST00000396345 PRADC1Q9BSG0 188 aa13.34□□□□□ -0.27
HOXA9-202ENST00000396345 V9GYV3 84 aa13.34□□□□□ -0.27
HOXA9-202ENST00000396345 VPS13DQ5THJ4 4388 aa13.34□□□□□ -0.27
HOXA9-202ENST00000396345 K7EQD1 137 aa13.33□□□□□ -0.28
HOXA9-202ENST00000396345 RHOHQ15669 191 aa13.33□□□□□ -0.28
HOXA9-202ENST00000396345 RNF212Q495C1 297 aa13.33□□□□□ -0.28
HOXA9-202ENST00000396345 TSKUQ8WUA8 353 aa13.33□□□□□ -0.28
HOXA9-202ENST00000396345 AP1S3Q96PC3 154 aa13.33□□□□□ -0.28
HOXA9-202ENST00000396345 MSRB1Q9NZV6 116 aa13.33□□□□□ -0.28
HOXA9-202ENST00000396345 LOC100131303A0A0U1RQF7 123 aa13.32□□□□□ -0.28
HOXA9-202ENST00000396345 SMIM17P0DL12 118 aa13.32□□□□□ -0.28
HOXA9-202ENST00000396345 C14orf178Q8N769 122 aaPredicted RBP13.32□□□□□ -0.28
HOXA9-202ENST00000396345 PGLYRP4Q96LB8 373 aa13.32□□□□□ -0.28
HOXA9-202ENST00000396345 CNFNQ9BYD5 112 aa13.32□□□□□ -0.28
HOXA9-202ENST00000396345 GFRA4Q9GZZ7 299 aa13.32□□□□□ -0.28
HOXA9-202ENST00000396345 TMEM218A2RU14 115 aa13.31□□□□□ -0.28
HOXA9-202ENST00000396345 FAM231BA6NCW3 169 aa13.31□□□□□ -0.28
HOXA9-202ENST00000396345 NTF3P20783 257 aa13.31□□□□□ -0.28
HOXA9-202ENST00000396345 SRIP30626 198 aa13.31□□□□□ -0.28
HOXA9-202ENST00000396345 FOXA3P55318 350 aaPredicted RBP13.31□□□□□ -0.28
HOXA9-202ENST00000396345 CCL18P55774 89 aa13.31□□□□□ -0.28
HOXA9-202ENST00000396345 PNRC1Q12796 327 aaPredicted RBP13.3□□□□□ -0.28
HOXA9-202ENST00000396345 TWIST1Q15672 202 aa13.3□□□□□ -0.28
HOXA9-202ENST00000396345 HIGD1CA8MV81 97 aa13.29□□□□□ -0.28
HOXA9-202ENST00000396345 F8W036 122 aa13.29□□□□□ -0.28
HOXA9-202ENST00000396345 TRGC1P0CF51 173 aa13.29□□□□□ -0.28
HOXA9-202ENST00000396345 RAB4BP61018 213 aa13.29□□□□□ -0.28
HOXA9-202ENST00000396345 ZNF56Q15929 161 aa13.29□□□□□ -0.28
HOXA9-202ENST00000396345 ESRGQ1W209 222 aa13.29□□□□□ -0.28
HOXA9-202ENST00000396345 NEGR1Q7Z3B1 354 aa13.29□□□□□ -0.28
HOXA9-202ENST00000396345 BORCS7Q96B45 105 aa13.29□□□□□ -0.28
HOXA9-202ENST00000396345 LINC00588Q9Y4M8 146 aa13.29□□□□□ -0.28
HOXA9-202ENST00000396345 KIF25-AS1Q9Y6Z4 181 aa13.29□□□□□ -0.28
HOXA9-202ENST00000396345 F5H697 171 aa13.27□□□□□ -0.29
HOXA9-202ENST00000396345 ADCYAP1P18509 176 aa13.27□□□□□ -0.29
HOXA9-202ENST00000396345 EVI2AP22794 236 aa13.27□□□□□ -0.29
HOXA9-202ENST00000396345 FAM3BP58499 235 aaPredicted RBP13.27□□□□□ -0.29
HOXA9-202ENST00000396345 SH2D6Q7Z4S9 175 aa13.27□□□□□ -0.29
HOXA9-202ENST00000396345 A0A1B0GUT8 65 aa13.26□□□□□ -0.29
HOXA9-202ENST00000396345 PPP1R2P9O14990 202 aa13.26□□□□□ -0.29
HOXA9-202ENST00000396345 MGPP08493 103 aa13.26□□□□□ -0.29
HOXA9-202ENST00000396345 LINC00315P59091 139 aa13.26□□□□□ -0.29
HOXA9-202ENST00000396345 LYPD5Q6UWN5 251 aa13.26□□□□□ -0.29
HOXA9-202ENST00000396345 DPH3P1Q9H4G8 78 aa13.26□□□□□ -0.29
HOXA9-202ENST00000396345 NAT8BQ9UHF3 227 aa13.26□□□□□ -0.29
HOXA9-202ENST00000396345 SMIM27A0A1W2PRY6 76 aa13.25□□□□□ -0.29
HOXA9-202ENST00000396345 GAGE12JA6NER3 117 aa13.25□□□□□ -0.29
HOXA9-202ENST00000396345 GAGE1Q13065 139 aa13.25□□□□□ -0.29
HOXA9-202ENST00000396345 GAGE4Q13068 117 aa13.25□□□□□ -0.29
HOXA9-202ENST00000396345 GAGE5Q13069 117 aa13.25□□□□□ -0.29
HOXA9-202ENST00000396345 GAGE13Q4V321 117 aa13.25□□□□□ -0.29
HOXA9-202ENST00000396345 SMIM15Q7Z3B0 74 aa13.25□□□□□ -0.29
HOXA9-202ENST00000396345 NUP35Q8NFH5 326 aa13.25□□□□□ -0.29
HOXA9-202ENST00000396345 SEC11CQ9BY50 192 aa13.25□□□□□ -0.29
HOXA9-202ENST00000396345 Q9UF83 564 aa13.25□□□□□ -0.29
HOXA9-202ENST00000396345 MT-ND4LP03901 98 aa13.24□□□□□ -0.29
HOXA9-202ENST00000396345 MRPS16Q9Y3D3 137 aaKnown RBP13.24□□□□□ -0.29
HOXA9-202ENST00000396345 TRBV10-1A0A0K0K1A3 114 aa13.23□□□□□ -0.29
HOXA9-202ENST00000396345 ANAPC16Q96DE5 110 aa13.23□□□□□ -0.29
HOXA9-202ENST00000396345 DNAH6Q9C0G6 4158 aa13.23□□□□□ -0.29
HOXA9-202ENST00000396345 LINC00694P0DN24 101 aa13.22□□□□□ -0.29
HOXA9-202ENST00000396345 RIGQ13278 110 aa13.22□□□□□ -0.29
HOXA9-202ENST00000396345 ATP6V0E2Q8NHE4 81 aa13.22□□□□□ -0.29
HOXA9-202ENST00000396345 ZNRF2Q8NHG8 242 aa13.22□□□□□ -0.29
HOXA9-202ENST00000396345 HYDINQ4G0P3 5121 aa13.22□□□□□ -0.29
HOXA9-202ENST00000396345 KMT2AQ03164 3969 aa13.22□□□□□ -0.29
HOXA9-202ENST00000396345 RPL36AP83881 106 aaKnown RBP13.21□□□□□ -0.29
HOXA9-202ENST00000396345 RPL36ALQ969Q0 106 aaKnown RBP13.21□□□□□ -0.29
HOXA9-202ENST00000396345 UPK3BQ9BT76 320 aa13.21□□□□□ -0.29
HOXA9-202ENST00000396345 EPPK1P58107 5090 aaKnown RBP13.21□□□□□ -0.3
HOXA9-202ENST00000396345 H7C1H1 209 aa13.2□□□□□ -0.3
HOXA9-202ENST00000396345 TIRAPP58753 221 aa13.2□□□□□ -0.3
HOXA9-202ENST00000396345 SUMO4Q6EEV6 95 aa13.2□□□□□ -0.3
HOXA9-202ENST00000396345 NEXN-AS1Q8NBZ9 246 aa13.2□□□□□ -0.3
HOXA9-202ENST00000396345 GTSF1LQ9H1H1 148 aa13.2□□□□□ -0.3
HOXA9-202ENST00000396345 IGLV2-18A0A075B6J9 118 aa13.19□□□□□ -0.3
HOXA9-202ENST00000396345 TRBV7-3A0A075B6L6 115 aa13.19□□□□□ -0.3
HOXA9-202ENST00000396345 M0QY20 66 aa13.19□□□□□ -0.3
HOXA9-202ENST00000396345 C10orf91Q5T1B1 145 aa13.19□□□□□ -0.3
HOXA9-202ENST00000396345 Q9H8V8 135 aa13.19□□□□□ -0.3
HOXA9-202ENST00000396345 TMEM191AQ9H0A3 160 aa13.18□□□□□ -0.3
HOXA9-202ENST00000396345 UBE2D3P61077 147 aa13.17□□□□□ -0.3
HOXA9-202ENST00000396345 UBE2D2P62837 147 aa13.17□□□□□ -0.3
HOXA9-202ENST00000396345 CARHSP1Q9Y2V2 147 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms