RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 CFC1BP0CG36 223 aa13.86□□□□□ -0.19
CCDC3-201ENST00000378825 CFC1P0CG37 223 aa13.86□□□□□ -0.19
CCDC3-201ENST00000378825 UBE2E1P51965 193 aa13.86□□□□□ -0.19
CCDC3-201ENST00000378825 ZNRF2Q8NHG8 242 aa13.86□□□□□ -0.19
CCDC3-201ENST00000378825 SOCS3O14543 225 aa13.86□□□□□ -0.19
CCDC3-201ENST00000378825 TMEM170BQ5T4T1 132 aa13.86□□□□□ -0.19
CCDC3-201ENST00000378825 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.86□□□□□ -0.19
CCDC3-201ENST00000378825 TMEM238LA0A1B0GVL6 79 aa13.85□□□□□ -0.19
CCDC3-201ENST00000378825 IGIPA6NJ69 53 aa13.85□□□□□ -0.19
CCDC3-201ENST00000378825 A6NJY4 79 aa13.85□□□□□ -0.19
CCDC3-201ENST00000378825 LINC00477Q96M19 166 aa13.85□□□□□ -0.19
CCDC3-201ENST00000378825 KLK9Q2XQG4 91 aa13.85□□□□□ -0.19
CCDC3-201ENST00000378825 GEMIN7Q9H840 131 aaKnown RBP13.85□□□□□ -0.19
CCDC3-201ENST00000378825 KLK9Q9UKQ9 250 aa13.85□□□□□ -0.19
CCDC3-201ENST00000378825 TRAV41A0A0B4J266 112 aa13.84□□□□□ -0.19
CCDC3-201ENST00000378825 KIF25-AS1Q9Y6Z4 181 aa13.84□□□□□ -0.19
CCDC3-201ENST00000378825 IGHV3-64A0A075B6Q5 118 aa13.84□□□□□ -0.19
CCDC3-201ENST00000378825 EIF4EBP3O60516 100 aaPredicted RBP13.84□□□□□ -0.19
CCDC3-201ENST00000378825 Q6ZUT4 128 aa13.84□□□□□ -0.19
CCDC3-201ENST00000378825 IGHV3-30P01768 117 aa13.84□□□□□ -0.19
CCDC3-201ENST00000378825 IGHV3-30-5P0DP03 117 aa13.84□□□□□ -0.19
CCDC3-201ENST00000378825 CRIP2P52943 208 aaPredicted RBP13.84□□□□□ -0.19
CCDC3-201ENST00000378825 BRD3OSQ6XYD6 125 aa13.84□□□□□ -0.19
CCDC3-201ENST00000378825 RAX2Q96IS3 184 aa13.84□□□□□ -0.19
CCDC3-201ENST00000378825 GNLYP22749 145 aa13.83□□□□□ -0.2
CCDC3-201ENST00000378825 TCTEX1D4Q5JR98 221 aa13.83□□□□□ -0.2
CCDC3-201ENST00000378825 SUMO4Q6EEV6 95 aa13.83□□□□□ -0.2
CCDC3-201ENST00000378825 F5H697 171 aa13.83□□□□□ -0.2
CCDC3-201ENST00000378825 H7C2G1 150 aa13.83□□□□□ -0.2
CCDC3-201ENST00000378825 CRYBA4P53673 196 aa13.83□□□□□ -0.2
CCDC3-201ENST00000378825 LMO4P61968 165 aa13.83□□□□□ -0.2
CCDC3-201ENST00000378825 GATA3P23771 443 aa13.82□□□□□ -0.2
CCDC3-201ENST00000378825 FAM74A4Q5TZK3 123 aa13.82□□□□□ -0.2
CCDC3-201ENST00000378825 LENEPQ9Y5L5 61 aa13.82□□□□□ -0.2
CCDC3-201ENST00000378825 NPFFO15130 113 aa13.82□□□□□ -0.2
CCDC3-201ENST00000378825 AMELXQ99217 191 aa13.82□□□□□ -0.2
CCDC3-201ENST00000378825 ZNF580Q9UK33 172 aa13.82□□□□□ -0.2
CCDC3-201ENST00000378825 ZNF256Q9Y2P7 627 aaPredicted RBP13.82□□□□□ -0.2
CCDC3-201ENST00000378825 PIEZO1Q92508 2521 aa13.81□□□□□ -0.2
CCDC3-201ENST00000378825 PMVKQ15126 192 aa13.81□□□□□ -0.2
CCDC3-201ENST00000378825 TRPT1Q86TN4 253 aaKnown RBP13.81□□□□□ -0.2
CCDC3-201ENST00000378825 TEN1Q86WV5 123 aa13.81□□□□□ -0.2
CCDC3-201ENST00000378825 ANKRD29Q8N6D5 301 aa13.81□□□□□ -0.2
CCDC3-201ENST00000378825 ATP6V0E2Q8NHE4 81 aa13.81□□□□□ -0.2
CCDC3-201ENST00000378825 FAM19A4Q96LR4 140 aa13.81□□□□□ -0.2
CCDC3-201ENST00000378825 POLR2KP53803 58 aaKnown RBP13.8□□□□□ -0.2
CCDC3-201ENST00000378825 CSPG4Q6UVK1 2322 aa13.8□□□□□ -0.2
CCDC3-201ENST00000378825 LY6EQ16553 131 aa13.8□□□□□ -0.2
CCDC3-201ENST00000378825 SDHAF1A6NFY7 115 aa13.79□□□□□ -0.2
CCDC3-201ENST00000378825 OVOL1O14753 267 aa13.79□□□□□ -0.2
CCDC3-201ENST00000378825 SCGB1C2P0DMR2 95 aa13.79□□□□□ -0.2
CCDC3-201ENST00000378825 DOPEY2Q9Y3R5 2298 aa13.79□□□□□ -0.2
CCDC3-201ENST00000378825 SLC25A29Q8N8R3 303 aa13.79□□□□□ -0.2
CCDC3-201ENST00000378825 PPDPFLQ8WWR9 84 aa13.79□□□□□ -0.2
CCDC3-201ENST00000378825 CREBBPQ92793 2442 aa13.79□□□□□ -0.2
CCDC3-201ENST00000378825 TRAV12-3A0A0B4J271 114 aa13.78□□□□□ -0.2
CCDC3-201ENST00000378825 ELANEP08246 267 aa13.78□□□□□ -0.2
CCDC3-201ENST00000378825 C19orf54Q5BKX5 351 aa13.78□□□□□ -0.2
CCDC3-201ENST00000378825 C10orf126Q8N4M7 172 aa13.78□□□□□ -0.2
CCDC3-201ENST00000378825 IGKV3-20P01619 116 aa13.78□□□□□ -0.2
CCDC3-201ENST00000378825 A4D1N5 150 aa13.77□□□□□ -0.2
CCDC3-201ENST00000378825 USP9XQ93008 2570 aaPredicted RBP13.77□□□□□ -0.2
CCDC3-201ENST00000378825 CENPEQ02224 2701 aa13.77□□□□□ -0.21
CCDC3-201ENST00000378825 J3QQQ9 107 aa13.77□□□□□ -0.21
CCDC3-201ENST00000378825 HERVK_113P61574 105 aa13.77□□□□□ -0.21
CCDC3-201ENST00000378825 RHPN1-AS1Q9BWJ2 59 aa13.77□□□□□ -0.21
CCDC3-201ENST00000378825 A8MWV9 139 aa13.76□□□□□ -0.21
CCDC3-201ENST00000378825 RNF183Q96D59 192 aa13.76□□□□□ -0.21
CCDC3-201ENST00000378825 PRO1854Q9UHT4 67 aa13.76□□□□□ -0.21
CCDC3-201ENST00000378825 TRAV12-2A0A075B6T6 113 aa13.76□□□□□ -0.21
CCDC3-201ENST00000378825 IGHV4OR15-8A0A075B7B6 117 aa13.76□□□□□ -0.21
CCDC3-201ENST00000378825 A0A087WW49 117 aa13.76□□□□□ -0.21
CCDC3-201ENST00000378825 IGHV4-39P01824 125 aa13.76□□□□□ -0.21
CCDC3-201ENST00000378825 ADARB2-AS1A8MUL3 147 aa13.75□□□□□ -0.21
CCDC3-201ENST00000378825 ZNF876PQ49A33 203 aa13.75□□□□□ -0.21
CCDC3-201ENST00000378825 MDFICQ9P1T7 246 aa13.75□□□□□ -0.21
CCDC3-201ENST00000378825 MYO18BQ8IUG5 2567 aa13.75□□□□□ -0.21
CCDC3-201ENST00000378825 TRAV2A0A0B4J234 112 aa13.75□□□□□ -0.21
CCDC3-201ENST00000378825 FAM223BA6NKX1 122 aa13.75□□□□□ -0.21
CCDC3-201ENST00000378825 C9JAW5 83 aa13.75□□□□□ -0.21
CCDC3-201ENST00000378825 FAM159AQ6UWV7 190 aa13.75□□□□□ -0.21
CCDC3-201ENST00000378825 FAM223AQ8IWN6 122 aa13.75□□□□□ -0.21
CCDC3-201ENST00000378825 POM121L12Q8N7R1 296 aa13.75□□□□□ -0.21
CCDC3-201ENST00000378825 MOB4Q9Y3A3 225 aa13.75□□□□□ -0.21
CCDC3-201ENST00000378825 CACNA1AO00555 2505 aa13.74□□□□□ -0.21
CCDC3-201ENST00000378825 NDUFA4O00483 81 aa13.74□□□□□ -0.21
CCDC3-201ENST00000378825 NXPH4O95158 308 aa13.74□□□□□ -0.21
CCDC3-201ENST00000378825 IGHV1-69DA0A0B4J2H0 117 aa13.74□□□□□ -0.21
CCDC3-201ENST00000378825 PF4V1P10720 104 aa13.74□□□□□ -0.21
CCDC3-201ENST00000378825 BLCAPP62952 87 aa13.74□□□□□ -0.21
CCDC3-201ENST00000378825 APRG1Q8IVJ8 170 aa13.74□□□□□ -0.21
CCDC3-201ENST00000378825 IGSF10Q6WRI0 2623 aa13.74□□□□□ -0.21
CCDC3-201ENST00000378825 VCYO14598 125 aa13.73□□□□□ -0.21
CCDC3-201ENST00000378825 MED14OSP0DP75 135 aa13.73□□□□□ -0.21
CCDC3-201ENST00000378825 LGALS3P17931 250 aaKnown RBP13.73□□□□□ -0.21
CCDC3-201ENST00000378825 SBSPONQ8IVN8 264 aa13.73□□□□□ -0.21
CCDC3-201ENST00000378825 ZFYVE26Q68DK2 2539 aa13.72□□□□□ -0.21
CCDC3-201ENST00000378825 ZNF688P0C7X2 276 aa13.72□□□□□ -0.21
CCDC3-201ENST00000378825 KLLNB2CW77 178 aa13.72□□□□□ -0.21
CCDC3-201ENST00000378825 P0DMU3 169 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms