RNA–Protein interactions for RNA: ENST00000375703.7

MSH5-201, Transcript of mutS homolog 5, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MSH5, Length 2,708 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-201ENST00000375703 NCOR2Q9Y618 2525 aa10.85□□□□□ -0.67
MSH5-201ENST00000375703 SDHAF1A6NFY7 115 aa10.85□□□□□ -0.67
MSH5-201ENST00000375703 C11orf86A6NJI1 115 aa10.85□□□□□ -0.67
MSH5-201ENST00000375703 EMP1P54849 157 aa10.85□□□□□ -0.67
MSH5-201ENST00000375703 SRSF9Q13242 221 aaKnown RBP eCLIP10.85□□□□□ -0.67
MSH5-201ENST00000375703 PAPPA-AS1Q5QFB9 102 aa10.85□□□□□ -0.67
MSH5-201ENST00000375703 AMTNQ6UX39 209 aa10.85□□□□□ -0.67
MSH5-201ENST00000375703 FAM74A4Q5TZK3 123 aa10.85□□□□□ -0.67
MSH5-201ENST00000375703 PLEKHB2Q96CS7 222 aa10.85□□□□□ -0.67
MSH5-201ENST00000375703 TMEM141Q96I45 108 aa10.85□□□□□ -0.67
MSH5-201ENST00000375703 IGLV4-69A0A075B6H9 119 aa10.84□□□□□ -0.67
MSH5-201ENST00000375703 TRAV12-2A0A075B6T6 113 aa10.84□□□□□ -0.67
MSH5-201ENST00000375703 COX6B1P14854 86 aa10.84□□□□□ -0.67
MSH5-201ENST00000375703 C10orf99Q6UWK7 81 aa10.84□□□□□ -0.67
MSH5-201ENST00000375703 ZNF580Q9UK33 172 aa10.84□□□□□ -0.67
MSH5-201ENST00000375703 HERVK_113P61574 105 aa10.84□□□□□ -0.67
MSH5-201ENST00000375703 SNRPD3P62318 126 aaKnown RBP10.84□□□□□ -0.67
MSH5-201ENST00000375703 MDFICQ9P1T7 246 aa10.84□□□□□ -0.67
MSH5-201ENST00000375703 CHD8Q9HCK8 2581 aa10.84□□□□□ -0.67
MSH5-201ENST00000375703 IGHV3-16A0A0C4DH30 117 aa10.83□□□□□ -0.68
MSH5-201ENST00000375703 LGALS9O00182 355 aa10.83□□□□□ -0.68
MSH5-201ENST00000375703 IGHV4-59P01825 116 aa10.83□□□□□ -0.68
MSH5-201ENST00000375703 A0A0J9YX75 114 aa10.83□□□□□ -0.68
MSH5-201ENST00000375703 A6NJY4 79 aa10.83□□□□□ -0.68
MSH5-201ENST00000375703 C9orf85Q96MD7 179 aa10.83□□□□□ -0.68
MSH5-201ENST00000375703 TIMM17AQ99595 171 aa10.83□□□□□ -0.68
MSH5-201ENST00000375703 TRBV27A0A0K0K1C4 114 aa10.82□□□□□ -0.68
MSH5-201ENST00000375703 DEFB112Q30KQ8 113 aa10.82□□□□□ -0.68
MSH5-201ENST00000375703 GAGE13Q4V321 117 aa10.82□□□□□ -0.68
MSH5-201ENST00000375703 MORN3Q6PF18 240 aaPredicted RBP10.82□□□□□ -0.68
MSH5-201ENST00000375703 ODF3Q96PU9 254 aa10.82□□□□□ -0.68
MSH5-201ENST00000375703 ZNF256Q9Y2P7 627 aaPredicted RBP10.82□□□□□ -0.68
MSH5-201ENST00000375703 TRBV6-5A0A0K0K1A5 114 aa10.82□□□□□ -0.68
MSH5-201ENST00000375703 Q8N1Y9 231 aa10.82□□□□□ -0.68
MSH5-201ENST00000375703 SYT8Q8NBV8 401 aa10.82□□□□□ -0.68
MSH5-201ENST00000375703 COL12A1Q99715 3063 aa10.82□□□□□ -0.68
MSH5-201ENST00000375703 PGPEP1Q9NXJ5 209 aa10.82□□□□□ -0.68
MSH5-201ENST00000375703 SPANXB1Q9NS25 103 aaPredicted RBP10.81□□□□□ -0.68
MSH5-201ENST00000375703 ITPR1Q14643 2758 aa10.81□□□□□ -0.68
MSH5-201ENST00000375703 GATA3P23771 443 aa10.81□□□□□ -0.68
MSH5-201ENST00000375703 SMAGPQ0VAQ4 97 aa10.81□□□□□ -0.68
MSH5-201ENST00000375703 ZNF56Q15929 161 aa10.81□□□□□ -0.68
MSH5-201ENST00000375703 TMEM170BQ5T4T1 132 aa10.81□□□□□ -0.68
MSH5-201ENST00000375703 MRPL16Q9NX20 251 aaKnown RBP10.81□□□□□ -0.68
MSH5-201ENST00000375703 K7EQG2 157 aa10.8□□□□□ -0.68
MSH5-201ENST00000375703 SH2D6Q7Z4S9 175 aa10.8□□□□□ -0.68
MSH5-201ENST00000375703 GTSF1LQ9H1H1 148 aa10.8□□□□□ -0.68
MSH5-201ENST00000375703 IGHV1OR15-1A0A075B7D0 117 aa10.8□□□□□ -0.68
MSH5-201ENST00000375703 M0QY20 66 aa10.8□□□□□ -0.68
MSH5-201ENST00000375703 SPINK13Q1W4C9 94 aa10.8□□□□□ -0.68
MSH5-201ENST00000375703 ETDBQ3ZM63 59 aa10.8□□□□□ -0.68
MSH5-201ENST00000375703 MTURNQ8N3F0 131 aa10.79□□□□□ -0.68
MSH5-201ENST00000375703 A0A0J9YY99 117 aa10.79□□□□□ -0.68
MSH5-201ENST00000375703 TMEM89A2RUT3 159 aa10.79□□□□□ -0.68
MSH5-201ENST00000375703 SYNJ2BPP57105 145 aa10.79□□□□□ -0.68
MSH5-201ENST00000375703 ZNF876PQ49A33 203 aa10.79□□□□□ -0.68
MSH5-201ENST00000375703 ZNRF2Q8NHG8 242 aa10.79□□□□□ -0.68
MSH5-201ENST00000375703 J3QR89 54 aa10.78□□□□□ -0.68
MSH5-201ENST00000375703 UBE2D1P51668 147 aa10.78□□□□□ -0.68
MSH5-201ENST00000375703 A0A1B0GV72 72 aa10.78□□□□□ -0.68
MSH5-201ENST00000375703 NRGNQ92686 78 aa10.78□□□□□ -0.68
MSH5-201ENST00000375703 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.78□□□□□ -0.681e-7■■■■□ 22.7
MSH5-201ENST00000375703 AZU1P20160 251 aa10.78□□□□□ -0.68
MSH5-201ENST00000375703 DSCR9P59020 149 aa10.78□□□□□ -0.68
MSH5-201ENST00000375703 TRPT1Q86TN4 253 aaKnown RBP10.78□□□□□ -0.68
MSH5-201ENST00000375703 DUX5Q96PT3 197 aa10.78□□□□□ -0.68
MSH5-201ENST00000375703 PRO0461Q9UI25 63 aa10.78□□□□□ -0.68
MSH5-201ENST00000375703 APOMO95445 188 aa10.77□□□□□ -0.69
MSH5-201ENST00000375703 TRAV26-1A0A087WT03 109 aa10.77□□□□□ -0.69
MSH5-201ENST00000375703 TSPEAR-AS2P59090 65 aa10.77□□□□□ -0.69
MSH5-201ENST00000375703 LINC01356Q8N9X3 169 aa10.77□□□□□ -0.69
MSH5-201ENST00000375703 OPRPNQ99935 248 aaPredicted RBP10.77□□□□□ -0.69
MSH5-201ENST00000375703 RHOHQ15669 191 aa10.76□□□□□ -0.69
MSH5-201ENST00000375703 SPG11Q96JI7 2443 aa10.76□□□□□ -0.69
MSH5-201ENST00000375703 LOC107984156A0A0G2JMH3 177 aa10.76□□□□□ -0.69
MSH5-201ENST00000375703 NSUN5P1Q3KNT7 163 aa10.76□□□□□ -0.69
MSH5-201ENST00000375703 SFTA2Q6UW10 78 aa10.76□□□□□ -0.69
MSH5-201ENST00000375703 ARL17AQ8IVW1 177 aa10.76□□□□□ -0.69
MSH5-201ENST00000375703 SPAG8Q99932 426 aaPredicted RBP10.76□□□□□ -0.69
MSH5-201ENST00000375703 MAP1AP78559 2803 aaPredicted RBP10.76□□□□□ -0.69
MSH5-201ENST00000375703 J3QQQ9 107 aa10.75□□□□□ -0.69
MSH5-201ENST00000375703 TSPAN13O95857 204 aa10.75□□□□□ -0.69
MSH5-201ENST00000375703 P0DMU3 169 aa10.75□□□□□ -0.69
MSH5-201ENST00000375703 FAM231AP0DMU4 169 aa10.75□□□□□ -0.69
MSH5-201ENST00000375703 FAM231CP0DMU5 169 aa10.75□□□□□ -0.69
MSH5-201ENST00000375703 CRYBA4P53673 196 aa10.75□□□□□ -0.69
MSH5-201ENST00000375703 SLC25A29Q8N8R3 303 aa10.75□□□□□ -0.69
MSH5-201ENST00000375703 TSSC4Q9Y5U2 329 aaPredicted RBP10.75□□□□□ -0.69
MSH5-201ENST00000375703 DLX4Q92988 240 aaPredicted RBP10.75□□□□□ -0.69
MSH5-201ENST00000375703 I3L3M4 83 aa10.74□□□□□ -0.69
MSH5-201ENST00000375703 TGFAP01135 160 aa10.74□□□□□ -0.69
MSH5-201ENST00000375703 LGALS3P17931 250 aaKnown RBP10.74□□□□□ -0.69
MSH5-201ENST00000375703 PSMB2P49721 201 aa10.74□□□□□ -0.69
MSH5-201ENST00000375703 NFE4Q86UQ8 179 aa10.74□□□□□ -0.69
MSH5-201ENST00000375703 NDUFA11Q86Y39 141 aa10.74□□□□□ -0.69
MSH5-201ENST00000375703 GAGE12HA6NDE8 117 aa10.74□□□□□ -0.69
MSH5-201ENST00000375703 IGHV3-30P01768 117 aa10.74□□□□□ -0.69
MSH5-201ENST00000375703 IGHV3-30-5P0DP03 117 aa10.74□□□□□ -0.69
MSH5-201ENST00000375703 SIGMAR1Q99720 223 aa10.74□□□□□ -0.69
MSH5-201ENST00000375703 HOXD3P31249 432 aaPredicted RBP10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms