RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 RPL35P42766 123 aaKnown RBP12.39□□□□□ -0.43
CLN3-202ENST00000355477 LINC01556Q5JQF7 62 aa12.39□□□□□ -0.43
CLN3-202ENST00000355477 LELP1Q5T871 98 aa12.39□□□□□ -0.43
CLN3-202ENST00000355477 FAM74A4Q5TZK3 123 aa12.39□□□□□ -0.43
CLN3-202ENST00000355477 EIF5AL1Q6IS14 154 aaKnown RBP12.39□□□□□ -0.43
CLN3-202ENST00000355477 C11orf52Q96A22 123 aa12.38□□□□□ -0.43
CLN3-202ENST00000355477 RHODO00212 210 aa12.37□□□□□ -0.43
CLN3-202ENST00000355477 PRR27Q6MZM9 219 aa12.37□□□□□ -0.43
CLN3-202ENST00000355477 SLC51BQ86UW2 128 aa12.37□□□□□ -0.43
CLN3-202ENST00000355477 ZFP82Q8N141 532 aa12.37□□□□□ -0.43
CLN3-202ENST00000355477 C10orf126Q8N4M7 172 aa12.37□□□□□ -0.43
CLN3-202ENST00000355477 PCLOQ9Y6V0 5065 aa12.36□□□□□ -0.43
CLN3-202ENST00000355477 hCG_2014768A0A024R1R8 64 aa12.36□□□□□ -0.43
CLN3-202ENST00000355477 A0A087WTM6 91 aa12.36□□□□□ -0.43
CLN3-202ENST00000355477 CDK2AP2O75956 126 aa12.36□□□□□ -0.43
CLN3-202ENST00000355477 IGHV3-30P01768 117 aa12.36□□□□□ -0.43
CLN3-202ENST00000355477 IGHV3-33P01772 117 aa12.36□□□□□ -0.43
CLN3-202ENST00000355477 IGHV3-30-3P0DP02 117 aa12.36□□□□□ -0.43
CLN3-202ENST00000355477 IGHV3-30-5P0DP03 117 aa12.36□□□□□ -0.43
CLN3-202ENST00000355477 ERVFC1-1P60608 527 aa12.36□□□□□ -0.43
CLN3-202ENST00000355477 OR10AG1Q8NH19 301 aa12.36□□□□□ -0.43
CLN3-202ENST00000355477 APOBP04114 4563 aaKnown RBP12.36□□□□□ -0.43
CLN3-202ENST00000355477 IBA57-AS1B1ANH7 110 aa12.35□□□□□ -0.43
CLN3-202ENST00000355477 CXCL1P09341 107 aa12.35□□□□□ -0.43
CLN3-202ENST00000355477 Q8N3U1 123 aa12.35□□□□□ -0.43
CLN3-202ENST00000355477 KRTAP4-5Q9BYR2 181 aa12.35□□□□□ -0.43
CLN3-202ENST00000355477 MUC21A0A0G2JKD1 596 aa12.34□□□□□ -0.43
CLN3-202ENST00000355477 MUC21A0A140T8X8 626 aa12.34□□□□□ -0.43
CLN3-202ENST00000355477 RAB19A4D1S5 217 aa12.34□□□□□ -0.43
CLN3-202ENST00000355477 TEX46H3BTG2 121 aa12.34□□□□□ -0.43
CLN3-202ENST00000355477 IGLV2-8P01709 118 aa12.34□□□□□ -0.43
CLN3-202ENST00000355477 CENPWQ5EE01 88 aa12.34□□□□□ -0.43
CLN3-202ENST00000355477 AKAP14Q86UN6 197 aa12.34□□□□□ -0.43
CLN3-202ENST00000355477 C9orf62Q8N4C0 152 aa12.34□□□□□ -0.43
CLN3-202ENST00000355477 SSBP4Q9BWG4 385 aaPredicted RBP12.34□□□□□ -0.43
CLN3-202ENST00000355477 EREGO14944 169 aa12.33□□□□□ -0.44
CLN3-202ENST00000355477 MEF2BQ02080 365 aaPredicted RBP12.33□□□□□ -0.44
CLN3-202ENST00000355477 PGPEP1Q9NXJ5 209 aa12.33□□□□□ -0.44
CLN3-202ENST00000355477 SNAI2O43623 268 aa12.32□□□□□ -0.44
CLN3-202ENST00000355477 BOLA1Q9Y3E2 137 aa12.32□□□□□ -0.44
CLN3-202ENST00000355477 OR5AL1P0C617 328 aa12.31□□□□□ -0.44
CLN3-202ENST00000355477 SSTP61278 116 aa12.31□□□□□ -0.44
CLN3-202ENST00000355477 Q9HAA7 133 aa12.31□□□□□ -0.44
CLN3-202ENST00000355477 PDE6DO43924 150 aa12.3□□□□□ -0.44
CLN3-202ENST00000355477 GZMBP10144 247 aa12.3□□□□□ -0.44
CLN3-202ENST00000355477 BCL2P10415 239 aa12.3□□□□□ -0.44
CLN3-202ENST00000355477 MED9Q9NWA0 146 aa12.3□□□□□ -0.44
CLN3-202ENST00000355477 TRBV20OR9-2A0A075B6H5 130 aa12.29□□□□□ -0.44
CLN3-202ENST00000355477 A0A087WWC5 75 aa12.29□□□□□ -0.44
CLN3-202ENST00000355477 LRCOL1A6NCL2 159 aa12.29□□□□□ -0.44
CLN3-202ENST00000355477 IFNA1P01562 189 aa12.29□□□□□ -0.44
CLN3-202ENST00000355477 GNG4P50150 75 aa12.29□□□□□ -0.44
CLN3-202ENST00000355477 SPANXN1Q5VSR9 72 aa12.29□□□□□ -0.44
CLN3-202ENST00000355477 VAX2Q9UIW0 290 aa12.29□□□□□ -0.44
CLN3-202ENST00000355477 TRBV10-1A0A0K0K1A3 114 aa12.28□□□□□ -0.44
CLN3-202ENST00000355477 C19orf71A6NCJ1 209 aa12.28□□□□□ -0.44
CLN3-202ENST00000355477 PSCAO43653 123 aa12.28□□□□□ -0.44
CLN3-202ENST00000355477 RAB4BP61018 213 aa12.28□□□□□ -0.44
CLN3-202ENST00000355477 UBE2D3P61077 147 aa12.28□□□□□ -0.44
CLN3-202ENST00000355477 UBE2D2P62837 147 aa12.28□□□□□ -0.44
CLN3-202ENST00000355477 DAZ4Q86SG3 579 aaKnown RBP12.28□□□□□ -0.44
CLN3-202ENST00000355477 DAZ3Q9NR90 486 aaKnown RBP12.28□□□□□ -0.44
CLN3-202ENST00000355477 ABCA13Q86UQ4 5058 aa12.28□□□□□ -0.44
CLN3-202ENST00000355477 TRBV7-3A0A075B6L6 115 aa12.27□□□□□ -0.45
CLN3-202ENST00000355477 RBFOX3A6NFN3 312 aa12.27□□□□□ -0.45
CLN3-202ENST00000355477 RPL36AP83881 106 aaKnown RBP12.27□□□□□ -0.45
CLN3-202ENST00000355477 ZNF56Q15929 161 aa12.27□□□□□ -0.45
CLN3-202ENST00000355477 CDPF1Q6NVV7 123 aa12.27□□□□□ -0.45
CLN3-202ENST00000355477 MAPKAPK5-AS1Q8N8E1 139 aa12.27□□□□□ -0.45
CLN3-202ENST00000355477 RPL36ALQ969Q0 106 aaKnown RBP12.27□□□□□ -0.45
CLN3-202ENST00000355477 KIF25-AS1Q9Y6Z4 181 aa12.27□□□□□ -0.45
CLN3-202ENST00000355477 IGLC6P0CF74 106 aa12.26□□□□□ -0.45
CLN3-202ENST00000355477 LAGE3Q14657 143 aa12.26□□□□□ -0.45
CLN3-202ENST00000355477 ALKAL2Q6UX46 152 aa12.26□□□□□ -0.45
CLN3-202ENST00000355477 NEXN-AS1Q8NBZ9 246 aa12.26□□□□□ -0.45
CLN3-202ENST00000355477 OR2D3Q8NGH3 330 aa12.26□□□□□ -0.45
CLN3-202ENST00000355477 OR10G8Q8NGN5 311 aa12.26□□□□□ -0.45
CLN3-202ENST00000355477 DAZAP1Q96EP5 407 aaKnown RBP12.26□□□□□ -0.45
CLN3-202ENST00000355477 SMIM12Q96EX1 92 aa12.26□□□□□ -0.45
CLN3-202ENST00000355477 NIT1Q86X76 327 aa12.25□□□□□ -0.45
CLN3-202ENST00000355477 TPPP3Q9BW30 176 aa12.25□□□□□ -0.45
CLN3-202ENST00000355477 A0A1B0GVG6 124 aa12.24□□□□□ -0.45
CLN3-202ENST00000355477 KRTAP10-1P60331 282 aa12.24□□□□□ -0.45
CLN3-202ENST00000355477 FER1L6-AS1Q8NA97 138 aa12.24□□□□□ -0.45
CLN3-202ENST00000355477 F5H697 171 aa12.23□□□□□ -0.45
CLN3-202ENST00000355477 P01737 135 aa12.23□□□□□ -0.45
CLN3-202ENST00000355477 TAGLN2P37802 199 aaKnown RBP12.23□□□□□ -0.45
CLN3-202ENST00000355477 RPS20P60866 119 aaKnown RBP12.23□□□□□ -0.45
CLN3-202ENST00000355477 DNAJC30Q96LL9 226 aa12.23□□□□□ -0.45
CLN3-202ENST00000355477 NKX2-5P52952 324 aaPredicted RBP12.22□□□□□ -0.45
CLN3-202ENST00000355477 NUDT10Q8NFP7 164 aa12.22□□□□□ -0.45
CLN3-202ENST00000355477 NUDT11Q96G61 164 aa12.22□□□□□ -0.45
CLN3-202ENST00000355477 TRAV8-3A0A0A6YYJ7 113 aa12.21□□□□□ -0.45
CLN3-202ENST00000355477 BLOC1S1P78537 153 aa12.21□□□□□ -0.45
CLN3-202ENST00000355477 WFDC2Q14508 124 aa12.21□□□□□ -0.45
CLN3-202ENST00000355477 Q8N1X5 172 aa12.21□□□□□ -0.45
CLN3-202ENST00000355477 LYPD6BQ8NI32 183 aa12.21□□□□□ -0.45
CLN3-202ENST00000355477 OCC1Q8TAD7 63 aa12.21□□□□□ -0.45
CLN3-202ENST00000355477 AP1S3Q96PC3 154 aa12.21□□□□□ -0.45
CLN3-202ENST00000355477 TM2D2Q9BX73 214 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 118.1 ms