RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ATP5EP2Q5VTU8 51 aa7.99□□□□□ -1.13
CCDC88A-202ENST00000336838 IGKV1OR2-108A0A075B7D4 117 aa7.99□□□□□ -1.13
CCDC88A-202ENST00000336838 MLST8Q9BVC4 326 aa7.99□□□□□ -1.13
CCDC88A-202ENST00000336838 KLK9Q9UKQ9 250 aa7.99□□□□□ -1.13
CCDC88A-202ENST00000336838 ANKRD39Q53RE8 183 aa7.98□□□□□ -1.13
CCDC88A-202ENST00000336838 BAALC-AS2P0C853 105 aa7.98□□□□□ -1.13
CCDC88A-202ENST00000336838 NUPR1O60356 82 aa7.98□□□□□ -1.13
CCDC88A-202ENST00000336838 DAD1P61803 113 aa7.98□□□□□ -1.13
CCDC88A-202ENST00000336838 H7C423 109 aa7.98□□□□□ -1.13
CCDC88A-202ENST00000336838 SUMO4Q6EEV6 95 aa7.98□□□□□ -1.13
CCDC88A-202ENST00000336838 ZNRF2Q8NHG8 242 aa7.98□□□□□ -1.13
CCDC88A-202ENST00000336838 UBE2E2Q96LR5 201 aa7.98□□□□□ -1.13
CCDC88A-202ENST00000336838 Q9H8V8 135 aa7.98□□□□□ -1.13
CCDC88A-202ENST00000336838 TRBV10-2A0A0K0K1G8 114 aa7.98□□□□□ -1.13
CCDC88A-202ENST00000336838 TRBV7-3A0A075B6L6 115 aa7.98□□□□□ -1.13
CCDC88A-202ENST00000336838 C5orf56Q8N8D9 126 aa7.98□□□□□ -1.13
CCDC88A-202ENST00000336838 K7EQD1 137 aa7.97□□□□□ -1.13
CCDC88A-202ENST00000336838 TRBV10-1A0A0K0K1A3 114 aa7.97□□□□□ -1.13
CCDC88A-202ENST00000336838 AMTNQ6UX39 209 aa7.97□□□□□ -1.13
CCDC88A-202ENST00000336838 IGHV1-58A0A0C4DH39 117 aa7.97□□□□□ -1.13
CCDC88A-202ENST00000336838 WFDC12Q8WWY7 111 aa7.97□□□□□ -1.13
CCDC88A-202ENST00000336838 MBD6Q96DN6 1003 aa7.97□□□□□ -1.13
CCDC88A-202ENST00000336838 NTN5Q8WTR8 489 aaPredicted RBP7.97□□□□□ -1.13
CCDC88A-202ENST00000336838 FXYD2P54710 66 aa7.96□□□□□ -1.13
CCDC88A-202ENST00000336838 SPANXB1Q9NS25 103 aaPredicted RBP7.96□□□□□ -1.13
CCDC88A-202ENST00000336838 DIAPH2-AS1Q14236 149 aa7.96□□□□□ -1.13
CCDC88A-202ENST00000336838 LINC01620Q4KN68 170 aa7.96□□□□□ -1.13
CCDC88A-202ENST00000336838 Q8N1Y9 231 aa7.96□□□□□ -1.13
CCDC88A-202ENST00000336838 FUSP35637 526 aaKnown RBP eCLIP7.96□□□□□ -1.142e-9■□□□□ 9.5
CCDC88A-202ENST00000336838 UNQ6494/PRO21346Q6UXR6 183 aa7.96□□□□□ -1.14
CCDC88A-202ENST00000336838 ZNF503Q96F45 646 aa7.96□□□□□ -1.14
CCDC88A-202ENST00000336838 CGB3P0DN86 165 aa7.96□□□□□ -1.14
CCDC88A-202ENST00000336838 CGB7P0DN87 165 aa7.96□□□□□ -1.14
CCDC88A-202ENST00000336838 RPL35AP18077 110 aaKnown RBP7.96□□□□□ -1.14
CCDC88A-202ENST00000336838 NBL1P41271 181 aa7.96□□□□□ -1.14
CCDC88A-202ENST00000336838 NDUFA11Q86Y39 141 aa7.96□□□□□ -1.14
CCDC88A-202ENST00000336838 NSUN5P1Q3KNT7 163 aa7.96□□□□□ -1.14
CCDC88A-202ENST00000336838 SPRY4Q9C004 299 aa7.96□□□□□ -1.14
CCDC88A-202ENST00000336838 RNASE8Q8TDE3 154 aaKnown RBP7.96□□□□□ -1.14
CCDC88A-202ENST00000336838 C17orf77Q96MU5 243 aa7.96□□□□□ -1.14
CCDC88A-202ENST00000336838 XCL2Q9UBD3 114 aa7.96□□□□□ -1.14
CCDC88A-202ENST00000336838 A4D1N5 150 aa7.95□□□□□ -1.14
CCDC88A-202ENST00000336838 RUSC1-AS1Q66K80 236 aa7.95□□□□□ -1.14
CCDC88A-202ENST00000336838 TINCRA0A1B0GVN0 87 aa7.95□□□□□ -1.14
CCDC88A-202ENST00000336838 PRR31Q5SQ13 230 aa7.95□□□□□ -1.14
CCDC88A-202ENST00000336838 GNLYP22749 145 aa7.95□□□□□ -1.14
CCDC88A-202ENST00000336838 hADV29S1A0JD25 119 aa7.95□□□□□ -1.14
CCDC88A-202ENST00000336838 PRSS33Q8NF86 280 aa7.95□□□□□ -1.14
CCDC88A-202ENST00000336838 F6UB75 175 aa7.95□□□□□ -1.14
CCDC88A-202ENST00000336838 TMEM256-PLSCR3K7ERE1 68 aa7.94□□□□□ -1.14
CCDC88A-202ENST00000336838 DEFB130BP0DP73 79 aa7.94□□□□□ -1.14
CCDC88A-202ENST00000336838 DEFB130AP0DP74 79 aa7.94□□□□□ -1.14
CCDC88A-202ENST00000336838 LY6DQ14210 128 aa7.94□□□□□ -1.14
CCDC88A-202ENST00000336838 OPRPNQ99935 248 aaPredicted RBP7.94□□□□□ -1.14
CCDC88A-202ENST00000336838 LGALS9O00182 355 aa7.94□□□□□ -1.14
CCDC88A-202ENST00000336838 COX7B2Q8TF08 81 aa7.94□□□□□ -1.14
CCDC88A-202ENST00000336838 IMUPQ9GZP8 106 aa7.94□□□□□ -1.14
CCDC88A-202ENST00000336838 ZNF295-AS1Q8N0V1 137 aa7.94□□□□□ -1.14
CCDC88A-202ENST00000336838 ANKRD11Q6UB99 2663 aaPredicted RBP7.94□□□□□ -1.14
CCDC88A-202ENST00000336838 IGKV1D-37A0A075B6S9 117 aa7.94□□□□□ -1.14
CCDC88A-202ENST00000336838 P0DMU3 169 aa7.94□□□□□ -1.14
CCDC88A-202ENST00000336838 FAM231AP0DMU4 169 aa7.94□□□□□ -1.14
CCDC88A-202ENST00000336838 FAM231CP0DMU5 169 aa7.94□□□□□ -1.14
CCDC88A-202ENST00000336838 WT1P19544 449 aaPredicted RBP7.94□□□□□ -1.14
CCDC88A-202ENST00000336838 IGLV2-8P01709 118 aa7.94□□□□□ -1.14
CCDC88A-202ENST00000336838 IGHV3-53P01767 116 aa7.94□□□□□ -1.14
CCDC88A-202ENST00000336838 IGLC6P0CF74 106 aa7.94□□□□□ -1.14
CCDC88A-202ENST00000336838 MIAQ16674 131 aa7.93□□□□□ -1.14
CCDC88A-202ENST00000336838 RPL39LQ96EH5 51 aaKnown RBP7.93□□□□□ -1.14
CCDC88A-202ENST00000336838 TP73-AS1Q9UF72 201 aa7.93□□□□□ -1.14
CCDC88A-202ENST00000336838 IGHG2P01859 326 aa7.93□□□□□ -1.14
CCDC88A-202ENST00000336838 NAV2Q8IVL1 2488 aa7.93□□□□□ -1.14
CCDC88A-202ENST00000336838 LINC00643Q86TS7 51 aa7.93□□□□□ -1.14
CCDC88A-202ENST00000336838 PCSK5Q92824 1860 aa7.93□□□□□ -1.14
CCDC88A-202ENST00000336838 TRAV12-2A0A075B6T6 113 aa7.93□□□□□ -1.14
CCDC88A-202ENST00000336838 PFN2P35080 140 aa7.93□□□□□ -1.14
CCDC88A-202ENST00000336838 DAZAP2Q15038 168 aaPredicted RBP7.93□□□□□ -1.14
CCDC88A-202ENST00000336838 Q8N9W7 124 aa7.93□□□□□ -1.14
CCDC88A-202ENST00000336838 CRIP3Q6Q6R5 217 aa7.93□□□□□ -1.14
CCDC88A-202ENST00000336838 LY6HO94772 140 aa7.93□□□□□ -1.14
CCDC88A-202ENST00000336838 SND1-IT1Q9HBX3 110 aa7.93□□□□□ -1.14
CCDC88A-202ENST00000336838 ODF3BA8MYP8 253 aa7.92□□□□□ -1.14
CCDC88A-202ENST00000336838 GNRH2O43555 120 aa7.92□□□□□ -1.14
CCDC88A-202ENST00000336838 TIMM17BO60830 172 aa7.92□□□□□ -1.14
CCDC88A-202ENST00000336838 CNFNQ9BYD5 112 aa7.92□□□□□ -1.14
CCDC88A-202ENST00000336838 VSIG2Q96IQ7 327 aa7.92□□□□□ -1.14
CCDC88A-202ENST00000336838 CCDC168Q8NDH2 2452 aa7.92□□□□□ -1.14
CCDC88A-202ENST00000336838 MUSTN1Q8IVN3 82 aa7.92□□□□□ -1.14
CCDC88A-202ENST00000336838 LRRK2Q5S007 2527 aa7.91□□□□□ -1.14
CCDC88A-202ENST00000336838 TLN2Q9Y4G6 2542 aa7.91□□□□□ -1.14
CCDC88A-202ENST00000336838 MYCNOSP40205 109 aa7.91□□□□□ -1.14
CCDC88A-202ENST00000336838 AJUBAQ96IF1 538 aa7.91□□□□□ -1.14
CCDC88A-202ENST00000336838 NDUFC2O95298 119 aa7.91□□□□□ -1.14
CCDC88A-202ENST00000336838 F5H768 121 aa7.91□□□□□ -1.14
CCDC88A-202ENST00000336838 UBE2DNLQ8IWF7 75 aa7.91□□□□□ -1.14
CCDC88A-202ENST00000336838 SPATA25Q9BR10 227 aa7.91□□□□□ -1.14
CCDC88A-202ENST00000336838 C4orf3Q8WVX3 66 aa7.91□□□□□ -1.14
CCDC88A-202ENST00000336838 LINC00173Q6ZV60 143 aa7.91□□□□□ -1.14
CCDC88A-202ENST00000336838 C20orf203Q8NBC4 194 aa7.91□□□□□ -1.14
CCDC88A-202ENST00000336838 ZNF625Q96I27 306 aaPredicted RBP7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 184.4 ms