RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 TAX1BP3O14907 124 aa17.72■□□□□ 0.43
TRIM54-201ENST00000296098 PLNP26678 52 aa17.72■□□□□ 0.43
TRIM54-201ENST00000296098 TMEM61Q8N0U2 210 aa17.72■□□□□ 0.43
TRIM54-201ENST00000296098 ITPR3Q14573 2671 aa17.71■□□□□ 0.43
TRIM54-201ENST00000296098 TRGV11A0A075B6L2 103 aa17.71■□□□□ 0.43
TRIM54-201ENST00000296098 HLA-DRB4P13762 266 aa17.71■□□□□ 0.43
TRIM54-201ENST00000296098 FAM74A4Q5TZK3 123 aa17.71■□□□□ 0.43
TRIM54-201ENST00000296098 NEGR1Q7Z3B1 354 aa17.71■□□□□ 0.43
TRIM54-201ENST00000296098 GTSCR1Q86UQ5 136 aa17.71■□□□□ 0.43
TRIM54-201ENST00000296098 DYNLRB2Q8TF09 96 aa17.71■□□□□ 0.43
TRIM54-201ENST00000296098 DLX4Q92988 240 aaPredicted RBP17.71■□□□□ 0.43
TRIM54-201ENST00000296098 HLA-DRB4X5D2U9 266 aa17.71■□□□□ 0.43
TRIM54-201ENST00000296098 HSD52Q0P140 79 aa17.71■□□□□ 0.42
TRIM54-201ENST00000296098 A8MTW9 85 aa17.7■□□□□ 0.42
TRIM54-201ENST00000296098 SEC11AP67812 179 aa17.7■□□□□ 0.42
TRIM54-201ENST00000296098 F8VRH5 84 aa17.69■□□□□ 0.42
TRIM54-201ENST00000296098 H7C1H1 209 aa17.69■□□□□ 0.42
TRIM54-201ENST00000296098 POLR2KP53803 58 aaKnown RBP17.69■□□□□ 0.42
TRIM54-201ENST00000296098 H3BMM0 161 aa17.68■□□□□ 0.42
TRIM54-201ENST00000296098 ZNF56Q15929 161 aa17.68■□□□□ 0.42
TRIM54-201ENST00000296098 NEXN-AS1Q8NBZ9 246 aa17.68■□□□□ 0.42
TRIM54-201ENST00000296098 CBY3A6NI87 242 aa17.67■□□□□ 0.42
TRIM54-201ENST00000296098 RBMY1A1P0DJD3 496 aaKnown RBP17.67■□□□□ 0.42
TRIM54-201ENST00000296098 RBMY1CP0DJD4 496 aa17.67■□□□□ 0.42
TRIM54-201ENST00000296098 RBMY1FQ15415 496 aaKnown RBP17.67■□□□□ 0.42
TRIM54-201ENST00000296098 HIST2H2BDQ6DRA6 164 aa17.67■□□□□ 0.42
TRIM54-201ENST00000296098 ERASQ7Z444 233 aa17.67■□□□□ 0.42
TRIM54-201ENST00000296098 CHTOPQ9Y3Y2 248 aaKnown RBP17.67■□□□□ 0.42
TRIM54-201ENST00000296098 TRBV6-5A0A0K0K1A5 114 aa17.66■□□□□ 0.42
TRIM54-201ENST00000296098 VCYO14598 125 aa17.66■□□□□ 0.42
TRIM54-201ENST00000296098 CRYGDP07320 174 aa17.66■□□□□ 0.42
TRIM54-201ENST00000296098 BAALCQ8WXS3 180 aa17.66■□□□□ 0.42
TRIM54-201ENST00000296098 CYSLTR1Q9Y271 337 aa17.66■□□□□ 0.42
TRIM54-201ENST00000296098 SDHAF1A6NFY7 115 aa17.65■□□□□ 0.42
TRIM54-201ENST00000296098 KIR2DL4Q99706 377 aa17.65■□□□□ 0.42
TRIM54-201ENST00000296098 MAP6D1Q9H9H5 199 aa17.65■□□□□ 0.42
TRIM54-201ENST00000296098 RBMY1BA6NDE4 496 aaKnown RBP17.65■□□□□ 0.42
TRIM54-201ENST00000296098 RBMY1EA6NEQ0 496 aaKnown RBP17.65■□□□□ 0.42
TRIM54-201ENST00000296098 RBMY1DP0C7P1 496 aaKnown RBP17.65■□□□□ 0.42
TRIM54-201ENST00000296098 PLA2G2AP14555 144 aa17.65■□□□□ 0.42
TRIM54-201ENST00000296098 ZNF124Q15973 351 aa17.65■□□□□ 0.42
TRIM54-201ENST00000296098 ZNF876PQ49A33 203 aa17.65■□□□□ 0.42
TRIM54-201ENST00000296098 TTTY13Q9BZ97 58 aa17.65■□□□□ 0.42
TRIM54-201ENST00000296098 ESM1Q9NQ30 184 aa17.65■□□□□ 0.42
TRIM54-201ENST00000296098 LINC01549A6NIU2 74 aa17.64■□□□□ 0.41
TRIM54-201ENST00000296098 DEFB114Q30KQ6 69 aa17.64■□□□□ 0.41
TRIM54-201ENST00000296098 ZFP2Q6ZN57 461 aa17.64■□□□□ 0.41
TRIM54-201ENST00000296098 TENM4Q6N022 2769 aa17.64■□□□□ 0.41
TRIM54-201ENST00000296098 UBE2V1Q13404 147 aa17.64■□□□□ 0.41
TRIM54-201ENST00000296098 HIGD1BQ9P298 99 aa17.64■□□□□ 0.41
TRIM54-201ENST00000296098 TRBV27A0A0K0K1C4 114 aa17.63■□□□□ 0.41
TRIM54-201ENST00000296098 M0QY20 66 aa17.63■□□□□ 0.41
TRIM54-201ENST00000296098 PTTG1IPP53801 180 aa17.63■□□□□ 0.41
TRIM54-201ENST00000296098 TP53TG1Q9Y2A0 90 aa17.63■□□□□ 0.41
TRIM54-201ENST00000296098 ZNF469Q96JG9 3925 aaPredicted RBP17.62■□□□□ 0.41
TRIM54-201ENST00000296098 A6NDN8 102 aa17.62■□□□□ 0.41
TRIM54-201ENST00000296098 J3QKU1 62 aa17.62■□□□□ 0.41
TRIM54-201ENST00000296098 KRTAP1-1Q07627 177 aa17.62■□□□□ 0.41
TRIM54-201ENST00000296098 MYO9AB2RTY4 2548 aa17.62■□□□□ 0.41
TRIM54-201ENST00000296098 CCL25O15444 150 aa17.62■□□□□ 0.41
TRIM54-201ENST00000296098 VAMP3Q15836 100 aa17.62■□□□□ 0.41
TRIM54-201ENST00000296098 TRPT1Q86TN4 253 aaKnown RBP17.62■□□□□ 0.41
TRIM54-201ENST00000296098 RAX2Q96IS3 184 aa17.62■□□□□ 0.41
TRIM54-201ENST00000296098 ZNF256Q9Y2P7 627 aaPredicted RBP17.62■□□□□ 0.41
TRIM54-201ENST00000296098 CD300EQ496F6 205 aaPredicted RBP17.61■□□□□ 0.41
TRIM54-201ENST00000296098 MORN3Q6PF18 240 aaPredicted RBP17.61■□□□□ 0.41
TRIM54-201ENST00000296098 TLN2Q9Y4G6 2542 aa17.61■□□□□ 0.41
TRIM54-201ENST00000296098 SPAG8Q99932 426 aaPredicted RBP17.6■□□□□ 0.41
TRIM54-201ENST00000296098 SORL1Q92673 2214 aa17.6■□□□□ 0.41
TRIM54-201ENST00000296098 HTN1P15515 57 aa17.6■□□□□ 0.41
TRIM54-201ENST00000296098 RIPPLY3P57055 190 aa17.6■□□□□ 0.41
TRIM54-201ENST00000296098 CHAC1Q9BUX1 264 aa17.6■□□□□ 0.41
TRIM54-201ENST00000296098 TRBV25-1A0A075B6N4 114 aa17.59■□□□□ 0.41
TRIM54-201ENST00000296098 PRSS29PA6NIE9 313 aa17.59■□□□□ 0.41
TRIM54-201ENST00000296098 JMJD8Q96S16 334 aa17.59■□□□□ 0.41
TRIM54-201ENST00000296098 YAE1D1Q9NRH1 226 aa17.59■□□□□ 0.41
TRIM54-201ENST00000296098 NBPF19A0A087WUL8 3843 aa17.59■□□□□ 0.41
TRIM54-201ENST00000296098 A0A1W2PRX2 142 aa17.59■□□□□ 0.41
TRIM54-201ENST00000296098 FHL3Q13643 280 aa17.59■□□□□ 0.41
TRIM54-201ENST00000296098 C11orf44Q8N8P7 122 aa17.59■□□□□ 0.41
TRIM54-201ENST00000296098 DEFB104AQ8WTQ1 72 aa17.59■□□□□ 0.41
TRIM54-201ENST00000296098 TRAV8-6A0A0B4J262 113 aa17.58■□□□□ 0.4
TRIM54-201ENST00000296098 FLNAP21333 2647 aaKnown RBP17.58■□□□□ 0.4
TRIM54-201ENST00000296098 IGIPA6NJ69 53 aa17.57■□□□□ 0.4
TRIM54-201ENST00000296098 CD28P10747 220 aa17.57■□□□□ 0.4
TRIM54-201ENST00000296098 RPL39P62891 51 aaKnown RBP17.57■□□□□ 0.4
TRIM54-201ENST00000296098 TMEM141Q96I45 108 aa17.57■□□□□ 0.4
TRIM54-201ENST00000296098 TSHBP01222 138 aa17.56■□□□□ 0.4
TRIM54-201ENST00000296098 TIMM17AQ99595 171 aa17.56■□□□□ 0.4
TRIM54-201ENST00000296098 SONP18583 2426 aaKnown RBP17.56■□□□□ 0.4
TRIM54-201ENST00000296098 TRAV25A0A0B4J276 109 aa17.55■□□□□ 0.4
TRIM54-201ENST00000296098 CCL24O00175 119 aa17.55■□□□□ 0.4
TRIM54-201ENST00000296098 ZNF415Q09FC8 603 aa17.55■□□□□ 0.4
TRIM54-201ENST00000296098 H3BRM9 83 aa17.55■□□□□ 0.4
TRIM54-201ENST00000296098 RHOHQ15669 191 aa17.55■□□□□ 0.4
TRIM54-201ENST00000296098 MAPKAPK5-AS1Q8N8E1 139 aa17.55■□□□□ 0.4
TRIM54-201ENST00000296098 OR11H12B2RN74 326 aa17.54■□□□□ 0.4
TRIM54-201ENST00000296098 NSUN5P1Q3KNT7 163 aa17.54■□□□□ 0.4
TRIM54-201ENST00000296098 OR11H2Q8NH07 326 aa17.54■□□□□ 0.4
TRIM54-201ENST00000296098 M0R2P5 195 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms