RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 H7C1H1 209 aa15.97■□□□□ 0.15
TRIM28-201ENST00000253024 SLC25A16P16260 332 aa15.97■□□□□ 0.15
TRIM28-201ENST00000253024 PRADC1Q9BSG0 188 aa15.96■□□□□ 0.15
TRIM28-201ENST00000253024 RNF223E7ERA6 249 aa15.96■□□□□ 0.15
TRIM28-201ENST00000253024 MRAP2Q96G30 205 aa15.96■□□□□ 0.15
TRIM28-201ENST00000253024 SMPXQ9UHP9 88 aa15.96■□□□□ 0.15
TRIM28-201ENST00000253024 ZNF56Q15929 161 aa15.96■□□□□ 0.14
TRIM28-201ENST00000253024 PRORYQ9H606 182 aa15.95■□□□□ 0.14
TRIM28-201ENST00000253024 SUMO4Q6EEV6 95 aa15.95■□□□□ 0.14
TRIM28-201ENST00000253024 SH2D6Q7Z4S9 175 aa15.95■□□□□ 0.14
TRIM28-201ENST00000253024 LINC01546A6NGU7 62 aa15.94■□□□□ 0.14
TRIM28-201ENST00000253024 ZNF815PA8K554 130 aa15.94■□□□□ 0.14
TRIM28-201ENST00000253024 WFDC2Q14508 124 aa15.94■□□□□ 0.14
TRIM28-201ENST00000253024 TEX48A0A1B0GUV7 120 aa15.94■□□□□ 0.14
TRIM28-201ENST00000253024 HLA-DRB4P13762 266 aa15.94■□□□□ 0.14
TRIM28-201ENST00000253024 ORMDL2Q53FV1 153 aa15.94■□□□□ 0.14
TRIM28-201ENST00000253024 HLA-DRB4X5D2U9 266 aa15.94■□□□□ 0.14
TRIM28-201ENST00000253024 TMEM170BQ5T4T1 132 aa15.93■□□□□ 0.14
TRIM28-201ENST00000253024 C18orf65Q6ZTR6 163 aa15.93■□□□□ 0.14
TRIM28-201ENST00000253024 USMG5Q96IX5 58 aa15.93■□□□□ 0.14
TRIM28-201ENST00000253024 ZNF479Q96JC4 524 aa15.93■□□□□ 0.14
TRIM28-201ENST00000253024 APOMO95445 188 aa15.93■□□□□ 0.14
TRIM28-201ENST00000253024 C12orf74Q32Q52 190 aa15.93■□□□□ 0.14
TRIM28-201ENST00000253024 BEX4Q9NWD9 120 aaPredicted RBP15.93■□□□□ 0.14
TRIM28-201ENST00000253024 IGHV4-4A0A075B6R2 117 aa15.93■□□□□ 0.14
TRIM28-201ENST00000253024 SRSF9Q13242 221 aaKnown RBP eCLIP15.93■□□□□ 0.14
TRIM28-201ENST00000253024 KHDC1LQ5JSQ8 128 aa15.93■□□□□ 0.14
TRIM28-201ENST00000253024 TOMM6Q96B49 74 aa15.93■□□□□ 0.14
TRIM28-201ENST00000253024 KNCNA6PVL3 124 aa15.92■□□□□ 0.14
TRIM28-201ENST00000253024 PLNP26678 52 aa15.92■□□□□ 0.14
TRIM28-201ENST00000253024 NEXN-AS1Q8NBZ9 246 aa15.92■□□□□ 0.14
TRIM28-201ENST00000253024 USP24Q9UPU5 2620 aa15.92■□□□□ 0.14
TRIM28-201ENST00000253024 C11orf86A6NJI1 115 aa15.91■□□□□ 0.14
TRIM28-201ENST00000253024 SDHAF1A6NFY7 115 aa15.91■□□□□ 0.14
TRIM28-201ENST00000253024 DCANP1Q8TF63 244 aa15.91■□□□□ 0.14
TRIM28-201ENST00000253024 PHLDA1Q8WV24 401 aaPredicted RBP15.91■□□□□ 0.14
TRIM28-201ENST00000253024 AKAP9Q99996 3911 aa15.91■□□□□ 0.14
TRIM28-201ENST00000253024 NBPF19A0A087WUL8 3843 aa15.9■□□□□ 0.14
TRIM28-201ENST00000253024 IGLL5B9A064 214 aa15.9■□□□□ 0.14
TRIM28-201ENST00000253024 P0DMU3 169 aa15.9■□□□□ 0.14
TRIM28-201ENST00000253024 FAM231AP0DMU4 169 aa15.9■□□□□ 0.14
TRIM28-201ENST00000253024 FAM231CP0DMU5 169 aa15.9■□□□□ 0.14
TRIM28-201ENST00000253024 RNASE13Q5GAN3 156 aaKnown RBP15.9■□□□□ 0.14
TRIM28-201ENST00000253024 Q8N1Y9 231 aa15.9■□□□□ 0.14
TRIM28-201ENST00000253024 MYMXA0A1B0GTQ4 84 aa15.9■□□□□ 0.14
TRIM28-201ENST00000253024 TSHBP01222 138 aa15.9■□□□□ 0.14
TRIM28-201ENST00000253024 LGALS1P09382 135 aaKnown RBP15.9■□□□□ 0.14
TRIM28-201ENST00000253024 C11orf44Q8N8P7 122 aa15.89■□□□□ 0.13
TRIM28-201ENST00000253024 PROK1P58294 105 aa15.89■□□□□ 0.13
TRIM28-201ENST00000253024 KLK9Q2XQG4 91 aa15.89■□□□□ 0.13
TRIM28-201ENST00000253024 ETDBQ3ZM63 59 aa15.89■□□□□ 0.13
TRIM28-201ENST00000253024 IGLV1-40P01703 118 aa15.88■□□□□ 0.13
TRIM28-201ENST00000253024 CRYGDP07320 174 aa15.88■□□□□ 0.13
TRIM28-201ENST00000253024 LINC00315P59091 139 aa15.88■□□□□ 0.13
TRIM28-201ENST00000253024 LOC107984156A0A0G2JMH3 177 aa15.87■□□□□ 0.13
TRIM28-201ENST00000253024 ZFP2Q6ZN57 461 aa15.87■□□□□ 0.13
TRIM28-201ENST00000253024 ARL17AQ8IVW1 177 aa15.87■□□□□ 0.13
TRIM28-201ENST00000253024 HIGD1BQ9P298 99 aa15.87■□□□□ 0.13
TRIM28-201ENST00000253024 LENEPQ9Y5L5 61 aa15.87■□□□□ 0.13
TRIM28-201ENST00000253024 Q9UF83 564 aa15.87■□□□□ 0.13
TRIM28-201ENST00000253024 IGHV4OR15-8A0A075B7B6 117 aa15.87■□□□□ 0.13
TRIM28-201ENST00000253024 A0A087WW49 117 aa15.87■□□□□ 0.13
TRIM28-201ENST00000253024 B4DSR2 109 aa15.87■□□□□ 0.13
TRIM28-201ENST00000253024 ID1P41134 155 aa15.86■□□□□ 0.13
TRIM28-201ENST00000253024 C20orf78Q9BR46 151 aa15.86■□□□□ 0.13
TRIM28-201ENST00000253024 TM2D2Q9BX73 214 aa15.86■□□□□ 0.13
TRIM28-201ENST00000253024 PGPEP1Q9NXJ5 209 aa15.86■□□□□ 0.13
TRIM28-201ENST00000253024 CEMP1Q6PRD7 247 aaPredicted RBP15.85■□□□□ 0.13
TRIM28-201ENST00000253024 ZNF580Q9UK33 172 aa15.85■□□□□ 0.13
TRIM28-201ENST00000253024 H7C2G1 150 aa15.85■□□□□ 0.13
TRIM28-201ENST00000253024 FAM19A4Q96LR4 140 aa15.85■□□□□ 0.13
TRIM28-201ENST00000253024 KIR2DL4Q99706 377 aa15.85■□□□□ 0.13
TRIM28-201ENST00000253024 MRPL16Q9NX20 251 aaKnown RBP15.85■□□□□ 0.13
TRIM28-201ENST00000253024 ADARB2-AS1A8MUL3 147 aa15.84■□□□□ 0.13
TRIM28-201ENST00000253024 INSL3P51460 131 aa15.84■□□□□ 0.13
TRIM28-201ENST00000253024 KIF25-AS1Q9Y6Z4 181 aa15.84■□□□□ 0.13
TRIM28-201ENST00000253024 LINC01549A6NIU2 74 aa15.84■□□□□ 0.13
TRIM28-201ENST00000253024 TSPEAR-AS2P59090 65 aa15.84■□□□□ 0.13
TRIM28-201ENST00000253024 ZNF876PQ49A33 203 aa15.84■□□□□ 0.13
TRIM28-201ENST00000253024 KLLNB2CW77 178 aa15.84■□□□□ 0.13
TRIM28-201ENST00000253024 SLURP1P55000 103 aa15.84■□□□□ 0.13
TRIM28-201ENST00000253024 PSMB8P28062 276 aa15.83■□□□□ 0.12
TRIM28-201ENST00000253024 CRIP2P52943 208 aaPredicted RBP15.83■□□□□ 0.12
TRIM28-201ENST00000253024 G3V4G9 280 aa15.83■□□□□ 0.12
TRIM28-201ENST00000253024 OR5A1Q8NGJ0 315 aa15.83■□□□□ 0.12
TRIM28-201ENST00000253024 TRBV7-3A0A075B6L6 115 aa15.82■□□□□ 0.12
TRIM28-201ENST00000253024 PRSS47A8MTI9 375 aa15.82■□□□□ 0.12
TRIM28-201ENST00000253024 GTSF1LQ9H1H1 148 aa15.82■□□□□ 0.12
TRIM28-201ENST00000253024 ZNRF2Q8NHG8 242 aa15.82■□□□□ 0.12
TRIM28-201ENST00000253024 ZNF418Q8TF45 676 aaPredicted RBP15.82■□□□□ 0.12
TRIM28-201ENST00000253024 SNRPD3P62318 126 aaKnown RBP15.81■□□□□ 0.12
TRIM28-201ENST00000253024 FLNAP21333 2647 aaKnown RBP15.81■□□□□ 0.12
TRIM28-201ENST00000253024 IGLV4-69A0A075B6H9 119 aa15.81■□□□□ 0.12
TRIM28-201ENST00000253024 TRAV12-1A0A0B4J245 112 aa15.81■□□□□ 0.12
TRIM28-201ENST00000253024 TMEM238C9JI98 176 aa15.81■□□□□ 0.12
TRIM28-201ENST00000253024 HOXD3P31249 432 aaPredicted RBP15.81■□□□□ 0.12
TRIM28-201ENST00000253024 KRTAP10-9P60411 292 aa15.81■□□□□ 0.12
TRIM28-201ENST00000253024 E9PLD3 99 aa15.8■□□□□ 0.12
TRIM28-201ENST00000253024 FN1P02751 2386 aaKnown RBP15.79■□□□□ 0.12
TRIM28-201ENST00000253024 IGHV3-16A0A0C4DH30 117 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms