RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 SNRPD3P62318 126 aaKnown RBP13.97□□□□□ -0.17
CPSF3-201ENST00000238112 C11orf86A6NJI1 115 aa13.96□□□□□ -0.17
CPSF3-201ENST00000238112 IGKV3-20P01619 116 aa13.96□□□□□ -0.17
CPSF3-201ENST00000238112 ODF3Q96PU9 254 aa13.96□□□□□ -0.17
CPSF3-201ENST00000238112 IGLV4-69A0A075B6H9 119 aa13.96□□□□□ -0.18
CPSF3-201ENST00000238112 COX6B1P14854 86 aa13.96□□□□□ -0.18
CPSF3-201ENST00000238112 EMP1P54849 157 aa13.96□□□□□ -0.18
CPSF3-201ENST00000238112 RPL39P62891 51 aaKnown RBP13.96□□□□□ -0.18
CPSF3-201ENST00000238112 SRSF9Q13242 221 aaKnown RBP eCLIP13.96□□□□□ -0.18
CPSF3-201ENST00000238112 SYT8Q8NBV8 401 aa13.96□□□□□ -0.18
CPSF3-201ENST00000238112 LGALS9O00182 355 aa13.95□□□□□ -0.18
CPSF3-201ENST00000238112 IGHV4-59P01825 116 aa13.95□□□□□ -0.18
CPSF3-201ENST00000238112 PLEKHB2Q96CS7 222 aa13.95□□□□□ -0.18
CPSF3-201ENST00000238112 TIMM17AQ99595 171 aa13.95□□□□□ -0.18
CPSF3-201ENST00000238112 TRAV12-2A0A075B6T6 113 aa13.95□□□□□ -0.18
CPSF3-201ENST00000238112 IGHV3-16A0A0C4DH30 117 aa13.95□□□□□ -0.18
CPSF3-201ENST00000238112 GATA3P23771 443 aa13.95□□□□□ -0.18
CPSF3-201ENST00000238112 AMTNQ6UX39 209 aa13.95□□□□□ -0.18
CPSF3-201ENST00000238112 C9orf85Q96MD7 179 aa13.95□□□□□ -0.18
CPSF3-201ENST00000238112 A0A0J9YX75 114 aa13.94□□□□□ -0.18
CPSF3-201ENST00000238112 WFDC2Q14508 124 aa13.94□□□□□ -0.18
CPSF3-201ENST00000238112 ZNF56Q15929 161 aa13.94□□□□□ -0.18
CPSF3-201ENST00000238112 KLHL30-AS1Q8NEE0 82 aa13.94□□□□□ -0.18
CPSF3-201ENST00000238112 TRBV6-5A0A0K0K1A5 114 aa13.93□□□□□ -0.18
CPSF3-201ENST00000238112 TRBV27A0A0K0K1C4 114 aa13.93□□□□□ -0.18
CPSF3-201ENST00000238112 C10orf99Q6UWK7 81 aa13.93□□□□□ -0.18
CPSF3-201ENST00000238112 MDFICQ9P1T7 246 aa13.93□□□□□ -0.18
CPSF3-201ENST00000238112 DEFB112Q30KQ8 113 aa13.93□□□□□ -0.18
CPSF3-201ENST00000238112 MRPL16Q9NX20 251 aaKnown RBP13.93□□□□□ -0.18
CPSF3-201ENST00000238112 PGPEP1Q9NXJ5 209 aa13.93□□□□□ -0.18
CPSF3-201ENST00000238112 ZNF256Q9Y2P7 627 aaPredicted RBP13.93□□□□□ -0.18
CPSF3-201ENST00000238112 GAGE13Q4V321 117 aa13.92□□□□□ -0.18
CPSF3-201ENST00000238112 MORN3Q6PF18 240 aaPredicted RBP13.92□□□□□ -0.18
CPSF3-201ENST00000238112 Q8N1Y9 231 aa13.92□□□□□ -0.18
CPSF3-201ENST00000238112 SPANXB1Q9NS25 103 aaPredicted RBP13.92□□□□□ -0.18
CPSF3-201ENST00000238112 K7EQG2 157 aa13.91□□□□□ -0.18
CPSF3-201ENST00000238112 TMEM170BQ5T4T1 132 aa13.91□□□□□ -0.18
CPSF3-201ENST00000238112 IGHV1OR15-1A0A075B7D0 117 aa13.91□□□□□ -0.18
CPSF3-201ENST00000238112 TMEM89A2RUT3 159 aa13.91□□□□□ -0.18
CPSF3-201ENST00000238112 SPINK13Q1W4C9 94 aa13.91□□□□□ -0.18
CPSF3-201ENST00000238112 COL12A1Q99715 3063 aa13.9□□□□□ -0.18
CPSF3-201ENST00000238112 J3QR89 54 aa13.9□□□□□ -0.18
CPSF3-201ENST00000238112 DSCR9P59020 149 aa13.9□□□□□ -0.18
CPSF3-201ENST00000238112 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.9□□□□□ -0.182e-6■■■■□ 21.4
CPSF3-201ENST00000238112 M0QY20 66 aa13.9□□□□□ -0.18
CPSF3-201ENST00000238112 SPG11Q96JI7 2443 aa13.89□□□□□ -0.19
CPSF3-201ENST00000238112 SYNJ2BPP57105 145 aa13.89□□□□□ -0.19
CPSF3-201ENST00000238112 ZNF876PQ49A33 203 aa13.89□□□□□ -0.19
CPSF3-201ENST00000238112 TRPT1Q86TN4 253 aaKnown RBP13.89□□□□□ -0.19
CPSF3-201ENST00000238112 A0A0J9YY99 117 aa13.88□□□□□ -0.19
CPSF3-201ENST00000238112 UBE2D1P51668 147 aa13.88□□□□□ -0.19
CPSF3-201ENST00000238112 RHOHQ15669 191 aa13.88□□□□□ -0.19
CPSF3-201ENST00000238112 ETDBQ3ZM63 59 aa13.88□□□□□ -0.19
CPSF3-201ENST00000238112 MTURNQ8N3F0 131 aa13.88□□□□□ -0.19
CPSF3-201ENST00000238112 ZNRF2Q8NHG8 242 aa13.88□□□□□ -0.19
CPSF3-201ENST00000238112 NSUN5P1Q3KNT7 163 aa13.87□□□□□ -0.19
CPSF3-201ENST00000238112 SH2D6Q7Z4S9 175 aa13.87□□□□□ -0.19
CPSF3-201ENST00000238112 LINC01356Q8N9X3 169 aa13.87□□□□□ -0.19
CPSF3-201ENST00000238112 NRGNQ92686 78 aa13.86□□□□□ -0.19
CPSF3-201ENST00000238112 PRO0461Q9UI25 63 aa13.86□□□□□ -0.19
CPSF3-201ENST00000238112 APOMO95445 188 aa13.86□□□□□ -0.19
CPSF3-201ENST00000238112 TSPEAR-AS2P59090 65 aa13.86□□□□□ -0.19
CPSF3-201ENST00000238112 DUX5Q96PT3 197 aa13.85□□□□□ -0.19
CPSF3-201ENST00000238112 MAP1AP78559 2803 aaPredicted RBP13.85□□□□□ -0.19
CPSF3-201ENST00000238112 TRGV11A0A075B6L2 103 aa13.85□□□□□ -0.19
CPSF3-201ENST00000238112 TSPAN13O95857 204 aa13.85□□□□□ -0.19
CPSF3-201ENST00000238112 LGALS3P17931 250 aaKnown RBP13.85□□□□□ -0.19
CPSF3-201ENST00000238112 DLX4Q92988 240 aaPredicted RBP13.85□□□□□ -0.19
CPSF3-201ENST00000238112 CSPG4Q6UVK1 2322 aa13.84□□□□□ -0.19
CPSF3-201ENST00000238112 LOC107984156A0A0G2JMH3 177 aa13.84□□□□□ -0.19
CPSF3-201ENST00000238112 ARL17AQ8IVW1 177 aa13.84□□□□□ -0.19
CPSF3-201ENST00000238112 J3QQQ9 107 aa13.84□□□□□ -0.19
CPSF3-201ENST00000238112 I3L3M4 83 aa13.83□□□□□ -0.2
CPSF3-201ENST00000238112 HOXD3P31249 432 aaPredicted RBP13.83□□□□□ -0.2
CPSF3-201ENST00000238112 NFE4Q86UQ8 179 aa13.83□□□□□ -0.2
CPSF3-201ENST00000238112 OPRPNQ99935 248 aaPredicted RBP13.83□□□□□ -0.2
CPSF3-201ENST00000238112 TSSC4Q9Y5U2 329 aaPredicted RBP13.83□□□□□ -0.2
CPSF3-201ENST00000238112 TGFAP01135 160 aa13.82□□□□□ -0.2
CPSF3-201ENST00000238112 ELANEP08246 267 aa13.82□□□□□ -0.2
CPSF3-201ENST00000238112 SLC25A29Q8N8R3 303 aa13.82□□□□□ -0.2
CPSF3-201ENST00000238112 PKD1L2Q7Z442 2459 aa13.82□□□□□ -0.2
CPSF3-201ENST00000238112 J3QLI3 93 aa13.82□□□□□ -0.2
CPSF3-201ENST00000238112 LYRM7Q5U5X0 104 aa13.82□□□□□ -0.2
CPSF3-201ENST00000238112 SFTA2Q6UW10 78 aa13.82□□□□□ -0.2
CPSF3-201ENST00000238112 NDUFA11Q86Y39 141 aa13.82□□□□□ -0.2
CPSF3-201ENST00000238112 C20orf203Q8NBC4 194 aa13.82□□□□□ -0.2
CPSF3-201ENST00000238112 SPAG8Q99932 426 aaPredicted RBP13.82□□□□□ -0.2
CPSF3-201ENST00000238112 VPREB3Q9UKI3 123 aa13.82□□□□□ -0.2
CPSF3-201ENST00000238112 IGHV3-30P01768 117 aa13.81□□□□□ -0.2
CPSF3-201ENST00000238112 P0DMU3 169 aa13.81□□□□□ -0.2
CPSF3-201ENST00000238112 FAM231AP0DMU4 169 aa13.81□□□□□ -0.2
CPSF3-201ENST00000238112 FAM231CP0DMU5 169 aa13.81□□□□□ -0.2
CPSF3-201ENST00000238112 IGHV3-30-5P0DP03 117 aa13.81□□□□□ -0.2
CPSF3-201ENST00000238112 PSMB2P49721 201 aa13.81□□□□□ -0.2
CPSF3-201ENST00000238112 CELSR2Q9HCU4 2923 aa13.81□□□□□ -0.2
CPSF3-201ENST00000238112 TMEM238C9JI98 176 aa13.81□□□□□ -0.2
CPSF3-201ENST00000238112 GAGE12HA6NDE8 117 aa13.8□□□□□ -0.2
CPSF3-201ENST00000238112 UBE2E2Q96LR5 201 aa13.8□□□□□ -0.2
CPSF3-201ENST00000238112 SIGMAR1Q99720 223 aa13.8□□□□□ -0.2
CPSF3-201ENST00000238112 DOPEY1Q5JWR5 2465 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms